Wall clock time and date at job start Tue Mar 31 2020 13:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.46951 * 2 1 4 4 C 1.34222 * 117.00277 * 180.02562 * 3 2 1 5 5 O 1.20835 * 119.99886 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00546 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47399 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47010 * 180.02562 * 7 6 4 9 9 N 1.46507 * 109.47103 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.08996 * 109.47479 * 299.99867 * 1 2 3 28 28 H 1.09005 * 109.47138 * 60.00453 * 1 2 3 29 29 H 1.09009 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46805 * 239.99800 * 2 1 3 31 31 H 1.08992 * 109.46913 * 119.99804 * 2 1 3 32 32 H 1.09001 * 109.46996 * 60.00138 * 6 4 3 33 33 H 1.08998 * 109.46932 * 299.99856 * 6 4 3 34 34 H 1.08992 * 109.47153 * 59.99791 * 7 6 4 35 35 H 1.09003 * 109.46640 * 300.00213 * 7 6 4 36 36 H 1.09001 * 109.47212 * 60.00084 * 8 7 6 37 37 H 1.08991 * 109.47261 * 299.99917 * 8 7 6 38 38 H 0.97000 * 119.99705 * 0.02562 * 9 8 7 39 39 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 40 40 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 41 41 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 43 43 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 45 45 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8574 -0.0023 8 6 6.0333 4.2713 -0.0023 9 7 7.4963 4.1946 -0.0028 10 6 8.2304 5.3250 -0.0024 11 8 7.6797 6.4055 -0.0020 12 6 9.7352 5.2461 -0.0035 13 6 10.3113 6.6387 -0.0033 14 6 10.6644 7.2404 -1.1899 15 6 11.2006 8.5186 -1.1920 16 6 11.3811 9.2081 -0.0026 17 6 11.0293 8.6287 1.1948 18 6 10.4840 7.3313 1.2090 19 6 10.1181 6.7261 2.4335 20 1 9.3580 5.9591 2.4507 21 6 10.7409 7.1209 3.6228 22 7 11.9421 7.6385 3.5918 23 14 9.8572 6.9090 5.2549 24 1 10.7251 7.4001 6.3552 25 1 8.5920 7.6861 5.2372 26 1 9.5522 5.4716 5.4696 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.5850 3.4698 0.8888 33 1 3.5844 3.4693 -0.8912 34 1 5.7838 2.3252 -0.8924 35 1 5.7851 2.3254 0.8875 36 1 5.6980 4.8031 0.8881 37 1 5.6967 4.8036 -0.8918 38 1 7.9367 3.3304 -0.0035 39 1 10.0705 4.7147 -0.8941 40 1 10.0718 4.7133 0.8858 41 1 10.5277 6.7128 -2.1222 42 1 11.4796 8.9811 -2.1272 43 1 11.7993 10.2037 -0.0161 44 1 11.1703 9.1676 2.1199 45 1 12.4346 7.6711 2.7568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776967086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:34 Heat of formation + Delta-G solvation = -132.867372 kcal Electronic energy + Delta-G solvation = -25549.259610 eV Core-core repulsion = 21723.433755 eV Total energy + Delta-G solvation = -3825.825855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80713 -39.26768 -37.59083 -37.13555 -35.44787 -33.80617 -32.88874 -32.05575 -31.62219 -29.17183 -28.02916 -26.29860 -24.83995 -23.73100 -22.32675 -21.03202 -20.89623 -20.55011 -19.40134 -18.06361 -17.67884 -17.19156 -16.70729 -16.26941 -15.82297 -15.46714 -14.95816 -14.77922 -14.37222 -14.11093 -13.86684 -13.67786 -13.45543 -13.33052 -13.00310 -12.63501 -12.52069 -12.25549 -12.20043 -12.03031 -11.96397 -11.70949 -11.64271 -11.29110 -11.17968 -11.00241 -10.91161 -10.81239 -10.78317 -10.42978 -10.35850 -9.60849 -9.34008 -9.19924 -8.91672 -8.72757 -7.51096 -7.46192 -7.08085 -4.37617 1.88962 2.27545 2.79838 2.89491 3.18253 3.31806 3.33781 3.40234 3.63867 4.05765 4.26454 4.48747 4.54481 4.62664 4.64697 4.67960 4.82989 4.91263 5.20872 5.25873 5.29665 5.33118 5.42596 5.53559 5.57006 5.73330 5.88813 5.93682 6.00861 6.09427 6.15961 6.21853 6.37594 6.40660 6.72722 6.77525 7.04664 7.25576 7.42049 7.46642 7.71873 7.87146 7.90217 7.94247 8.00358 8.25607 8.39434 8.83020 8.86027 8.97275 10.11370 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.002426 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.184300 B =11537.362495 C =12868.411764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.508 6.508 6 C -0.111 4.111 7 C -0.121 4.121 8 C 0.121 3.879 9 N -0.746 5.746 10 C 0.515 3.485 11 O -0.521 6.521 12 C -0.070 4.070 13 C -0.184 4.184 14 C -0.069 4.069 15 C -0.253 4.253 16 C -0.086 4.086 17 C -0.216 4.216 18 C 0.116 3.884 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.040 3.960 22 N -0.799 5.799 23 Si 1.060 2.940 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.277 1.277 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.397 0.603 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 -13.917 -5.077 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.306 3.694 5 O -0.396 6.396 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.003 4.003 9 N -0.401 5.401 10 C 0.302 3.698 11 O -0.395 6.395 12 C -0.110 4.110 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.273 4.273 16 C -0.105 4.105 17 C -0.235 4.235 18 C 0.113 3.887 19 C -0.544 4.544 20 H 0.090 0.910 21 C -0.182 4.182 22 N -0.423 5.423 23 Si 0.884 3.116 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.203 1.203 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.231 0.769 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.616 -13.103 -3.438 21.438 hybrid contribution -0.014 -0.865 -1.739 1.942 sum -16.629 -13.968 -5.177 22.326 Atomic orbital electron populations 1.21816 0.92544 1.03035 1.03626 1.23035 0.95439 0.80155 1.02657 1.86512 1.24702 1.32495 1.84035 1.23801 0.80483 0.92963 0.72150 1.90686 1.60379 1.43316 1.45195 1.21311 0.96169 0.90841 1.06569 1.21619 0.92357 0.97365 1.04508 1.21166 0.81177 0.95514 1.02446 1.46095 1.06081 1.09402 1.78492 1.21208 0.90452 0.83298 0.74821 1.90681 1.73445 1.28141 1.47236 1.20247 0.89769 0.98151 1.02831 1.19017 1.11230 0.94628 0.93745 1.20358 0.98066 0.94863 0.95464 1.20260 1.13567 0.97234 0.96210 1.20600 0.99065 0.97535 0.93294 1.21133 1.09605 0.96198 0.96561 1.17400 0.88648 0.90544 0.92125 1.20432 1.20685 1.20944 0.92374 0.90993 1.26929 0.95089 0.91675 1.04497 1.70451 1.08870 1.29425 1.33507 0.83708 0.76255 0.77565 0.74032 1.19918 1.20052 1.20251 0.91388 0.91418 0.90199 0.91212 0.91173 0.87060 0.87172 0.90347 0.90198 0.91489 0.91713 0.76949 0.90615 0.88626 0.89619 0.89478 0.89412 0.87776 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.34 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.36 -3.26 10.22 -39.24 -0.40 -3.66 16 4 C 0.46 4.54 7.96 36.00 0.29 4.83 16 5 O -0.51 -6.40 15.73 -18.76 -0.30 -6.70 16 6 C -0.11 -0.85 5.81 -27.88 -0.16 -1.01 16 7 C -0.12 -1.11 4.62 -26.73 -0.12 -1.23 16 8 C 0.12 1.47 5.67 -4.04 -0.02 1.44 16 9 N -0.75 -10.68 5.56 -60.30 -0.33 -11.01 16 10 C 0.51 10.04 7.46 -10.99 -0.08 9.96 16 11 O -0.52 -12.57 16.03 5.56 0.09 -12.48 16 12 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 13 C -0.18 -4.46 4.43 -103.91 -0.46 -4.93 16 14 C -0.07 -1.60 9.66 -39.66 -0.38 -1.99 16 15 C -0.25 -5.90 10.05 -39.29 -0.39 -6.30 16 16 C -0.09 -2.10 10.02 -39.66 -0.40 -2.50 16 17 C -0.22 -5.73 7.95 -38.87 -0.31 -6.04 16 18 C 0.12 3.10 5.30 -106.82 -0.57 2.53 16 19 C -0.52 -13.69 8.08 -37.74 -0.30 -13.99 16 20 H 0.07 1.87 6.73 -52.49 -0.35 1.52 16 21 C 0.04 1.02 4.94 -17.34 -0.09 0.93 16 22 N -0.80 -21.32 12.31 55.55 0.68 -20.64 16 23 Si 1.06 22.09 30.00 -169.99 -5.10 16.99 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.52 8.47 -40.82 -0.35 4.17 16 39 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 40 H 0.10 1.86 7.06 -51.93 -0.37 1.50 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 44 H 0.10 2.84 6.49 -52.49 -0.34 2.50 16 45 H 0.30 8.18 6.68 -40.82 -0.27 7.90 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -33.43 381.91 -8.95 -42.39 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.81 Total: 8.85 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.54 Total: -19.50 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.35 Total: -31.65 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.61 Total: -22.84 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.10 Total: 16.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.43 -8.95 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776967086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.480 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds