Wall clock time and date at job start Tue Mar 31 2020 12:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47403 * 2 1 4 4 N 1.46509 * 109.47205 * 119.99740 * 2 1 3 5 5 C 1.34773 * 119.99753 * 84.99972 * 4 2 1 6 6 O 1.21285 * 120.00206 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00031 * 180.27936 * 5 4 2 8 8 H 1.09003 * 109.47368 * 59.71836 * 7 5 4 9 9 C 1.53002 * 109.46717 * 299.72236 * 7 5 4 10 10 O 1.45194 * 109.47448 * 179.72274 * 7 5 4 11 11 C 1.34223 * 117.00218 * 209.99622 * 10 7 5 12 12 O 1.20825 * 120.00350 * 0.02562 * 11 10 7 13 13 C 1.50704 * 120.00078 * 179.97438 * 11 10 7 14 14 C 1.50701 * 109.47008 * 180.02562 * 13 11 10 15 15 C 1.37634 * 120.12911 * 264.99751 * 14 13 11 16 16 C 1.38610 * 120.25001 * 179.97438 * 15 14 13 17 17 C 1.38654 * 120.50260 * 0.02687 * 16 15 14 18 18 C 1.37606 * 120.24759 * 0.02562 * 17 16 15 19 19 C 1.40699 * 120.12737 * 84.72719 * 14 13 11 20 20 C 1.41396 * 120.24467 * 359.97438 * 19 14 13 21 21 H 1.08005 * 119.99650 * 329.69974 * 20 19 14 22 22 C 1.39942 * 120.00068 * 149.70416 * 20 19 14 23 23 N 1.30827 * 119.99989 * 162.01789 * 22 20 19 24 24 Si 1.86796 * 120.00117 * 342.01097 * 22 20 19 25 25 H 1.48500 * 109.47026 * 95.40584 * 24 22 20 26 26 H 1.48498 * 109.47151 * 215.40241 * 24 22 20 27 27 H 1.48496 * 109.47133 * 335.40200 * 24 22 20 28 28 H 1.09001 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47159 * 300.00074 * 1 2 3 30 30 H 1.09003 * 109.46819 * 59.99914 * 1 2 3 31 31 H 1.08995 * 109.47532 * 239.99826 * 2 1 3 32 32 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46315 * 300.00042 * 3 2 1 34 34 H 1.08995 * 109.46919 * 59.99450 * 3 2 1 35 35 H 0.96996 * 119.99720 * 264.99983 * 4 2 1 36 36 H 1.08999 * 109.47340 * 299.99802 * 9 7 5 37 37 H 1.09001 * 109.47380 * 60.00316 * 9 7 5 38 38 H 1.08999 * 109.47059 * 179.97438 * 9 7 5 39 39 H 1.09004 * 109.47046 * 299.99929 * 13 11 10 40 40 H 1.09000 * 109.46981 * 60.00017 * 13 11 10 41 41 H 1.07997 * 119.87287 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.75051 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.88157 * 179.97438 * 17 16 15 44 44 H 1.08000 * 120.12265 * 179.97438 * 18 17 16 45 45 H 0.96999 * 119.99873 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 2.1471 -2.0322 1.1945 6 8 1.8581 -2.6678 0.2028 7 6 2.6434 -2.7431 2.4270 8 1 1.9696 -2.5406 3.2595 9 6 4.0471 -2.2428 2.7738 10 8 2.6872 -4.1727 2.1766 11 6 2.4942 -4.9820 3.2298 12 8 2.2946 -4.5117 4.3247 13 6 2.5251 -6.4776 3.0465 14 6 2.2819 -7.1513 4.3724 15 6 3.3452 -7.5550 5.1475 16 6 3.1245 -8.1744 6.3677 17 6 1.8330 -8.3951 6.8214 18 6 0.7548 -8.0009 6.0627 19 6 0.9671 -7.3649 4.8254 20 6 -0.1330 -6.9489 4.0405 21 1 -0.0401 -6.0893 3.3933 22 6 -1.3421 -7.6508 4.1026 23 7 -2.4450 -7.0930 3.6736 24 14 -1.3812 -9.3842 4.7976 25 1 -1.7558 -9.3333 6.2337 26 1 -2.3799 -10.1933 4.0540 27 1 -0.0390 -10.0040 4.6578 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 2.2490 -0.1822 1.9895 36 1 4.7210 -2.4454 1.9413 37 1 4.0143 -1.1697 2.9619 38 1 4.4060 -2.7567 3.6655 39 1 1.7484 -6.7733 2.3412 40 1 3.4996 -6.7762 2.6601 41 1 4.3554 -7.3877 4.8040 42 1 3.9647 -8.4875 6.9695 43 1 1.6726 -8.8790 7.7736 44 1 -0.2502 -8.1742 6.4179 45 1 -3.2831 -7.5794 3.7169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777162847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:43 Heat of formation + Delta-G solvation = -116.536750 kcal Electronic energy + Delta-G solvation = -26836.437493 eV Core-core repulsion = 23011.319787 eV Total energy + Delta-G solvation = -3825.117706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48667 -39.45244 -37.89503 -36.29063 -35.67349 -33.60594 -32.84543 -31.92754 -30.55836 -30.34073 -27.46958 -27.29016 -25.12586 -24.66962 -22.10828 -21.39920 -20.89858 -20.31060 -19.43470 -17.52600 -17.35255 -17.29253 -16.40628 -15.78695 -15.75079 -15.23229 -15.01653 -14.46587 -14.34786 -14.06884 -13.87574 -13.75511 -13.24784 -13.08603 -12.78628 -12.63104 -12.59444 -12.39748 -12.34159 -12.18087 -11.92606 -11.65937 -11.54017 -11.44817 -11.21013 -11.16011 -10.82238 -10.76159 -10.52032 -10.26279 -9.87195 -9.72359 -9.65433 -9.56638 -9.26603 -9.13242 -7.64126 -7.54628 -6.94232 -4.50147 2.34760 2.55544 2.67223 2.73040 2.91568 3.12376 3.21550 3.33041 3.51817 3.98803 4.46333 4.51056 4.66525 4.76829 4.83479 4.97870 5.03246 5.16731 5.31568 5.42026 5.43216 5.53569 5.58166 5.63148 5.65170 5.82866 5.84619 5.91470 5.96351 6.06770 6.08591 6.16841 6.30644 6.33151 6.54831 6.70004 6.85819 6.93746 7.18433 7.31478 7.41569 7.63314 7.72513 7.87923 8.11856 8.12460 8.33250 8.41405 8.65332 8.80086 10.07746 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003449 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.211803 B = 8116.462552 C = 9411.636958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 C -0.159 4.159 4 N -0.727 5.727 5 C 0.520 3.480 6 O -0.513 6.513 7 C 0.066 3.934 8 H 0.110 0.890 9 C -0.162 4.162 10 O -0.337 6.337 11 C 0.462 3.538 12 O -0.492 6.492 13 C -0.043 4.043 14 C -0.181 4.181 15 C -0.063 4.063 16 C -0.244 4.244 17 C -0.076 4.076 18 C -0.233 4.233 19 C 0.110 3.890 20 C -0.445 4.445 21 H 0.088 0.912 22 C 0.085 3.915 23 N -0.805 5.805 24 Si 0.911 3.089 25 H -0.271 1.271 26 H -0.291 1.291 27 H -0.243 1.243 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.636 12.648 -4.764 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.033 3.967 3 C -0.217 4.217 4 N -0.382 5.382 5 C 0.305 3.695 6 O -0.386 6.386 7 C 0.007 3.993 8 H 0.128 0.872 9 C -0.220 4.220 10 O -0.254 6.254 11 C 0.305 3.695 12 O -0.377 6.377 13 C -0.081 4.081 14 C -0.182 4.182 15 C -0.082 4.082 16 C -0.264 4.264 17 C -0.095 4.095 18 C -0.252 4.252 19 C 0.107 3.893 20 C -0.473 4.473 21 H 0.106 0.894 22 C -0.134 4.134 23 N -0.428 5.428 24 Si 0.738 3.262 25 H -0.197 1.197 26 H -0.219 1.219 27 H -0.166 1.166 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.073 12.383 -5.268 15.692 hybrid contribution -0.271 -0.217 0.914 0.978 sum 7.802 12.165 -4.353 15.094 Atomic orbital electron populations 1.22215 0.95103 1.03132 1.02069 1.20949 0.94369 0.92645 0.88689 1.22077 1.01659 0.94995 1.02986 1.46002 1.68613 1.06477 1.17083 1.20277 0.77675 0.82337 0.89216 1.90742 1.47880 1.65604 1.34412 1.22287 0.99569 0.80706 0.96697 0.87225 1.22132 0.94775 1.01631 1.03412 1.86684 1.82978 1.15842 1.39894 1.24495 0.72013 0.90943 0.82060 1.90632 1.43719 1.76883 1.26504 1.20004 1.04149 0.84665 0.99250 1.19053 0.93528 1.09683 0.95957 1.20450 0.96352 0.97160 0.94193 1.20329 0.95543 1.11631 0.98848 1.20623 0.93200 0.98006 0.97629 1.21004 0.97113 1.10156 0.96909 1.17481 0.91997 0.88905 0.90878 1.19450 0.93274 1.12554 1.22012 0.89373 1.26175 0.94349 1.00566 0.92334 1.69707 0.99640 1.37885 1.35600 0.86316 0.79759 0.81633 0.78518 1.19714 1.21851 1.16559 0.91722 0.92376 0.91597 0.89321 0.91955 0.90870 0.92000 0.76592 0.91074 0.90678 0.90490 0.86859 0.88917 0.88874 0.88870 0.88896 0.88212 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.48 37.16 0.35 -1.28 16 2 C 0.14 1.29 3.18 -67.92 -0.22 1.07 16 3 C -0.16 -0.96 9.38 37.16 0.35 -0.61 16 4 N -0.73 -7.50 4.97 -53.80 -0.27 -7.76 16 5 C 0.52 7.69 7.20 -10.99 -0.08 7.61 16 6 O -0.51 -9.75 16.17 -14.11 -0.23 -9.98 16 7 C 0.07 1.00 2.98 -27.88 -0.08 0.92 16 8 H 0.11 1.71 7.16 -51.93 -0.37 1.34 16 9 C -0.16 -1.80 9.45 37.16 0.35 -1.45 16 10 O -0.34 -6.32 9.41 -45.88 -0.43 -6.75 16 11 C 0.46 9.52 7.52 36.01 0.27 9.79 16 12 O -0.49 -11.30 15.25 -18.75 -0.29 -11.59 16 13 C -0.04 -0.87 5.30 -29.03 -0.15 -1.02 16 14 C -0.18 -4.15 4.43 -103.91 -0.46 -4.61 16 15 C -0.06 -1.34 9.66 -39.66 -0.38 -1.72 16 16 C -0.24 -5.15 10.05 -39.29 -0.39 -5.55 16 17 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 18 C -0.23 -5.75 7.17 -38.87 -0.28 -6.02 16 19 C 0.11 2.83 5.10 -106.82 -0.54 2.28 16 20 C -0.44 -12.10 8.55 -37.74 -0.32 -12.42 16 21 H 0.09 2.55 6.99 -52.48 -0.37 2.18 16 22 C 0.09 2.25 5.41 -17.34 -0.09 2.16 16 23 N -0.80 -21.74 13.93 55.55 0.77 -20.96 16 24 Si 0.91 20.94 24.52 -169.99 -4.17 16.77 16 25 H -0.27 -6.08 6.71 56.52 0.38 -5.70 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.24 -5.65 6.85 56.52 0.39 -5.27 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.40 2.93 8.03 -40.82 -0.33 2.61 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.58 7.57 -51.93 -0.39 0.19 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.11 2.34 7.15 -51.93 -0.37 1.97 16 40 H 0.09 1.52 8.05 -51.93 -0.42 1.11 16 41 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.10 2.45 4.74 -52.49 -0.25 2.21 16 45 H 0.29 6.97 8.30 -40.82 -0.34 6.63 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -32.87 374.70 -7.76 -40.63 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.71 Total: 6.95 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.09 Total: -12.96 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 0.51 Total: -28.73 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.95 Total: -28.31 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.17 Total: 16.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.87 -7.76 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.906 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds