Wall clock time and date at job start Tue Mar 31 2020 12:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47403 * 2 1 4 4 N 1.46509 * 109.47205 * 119.99740 * 2 1 3 5 5 C 1.34773 * 119.99753 * 84.99972 * 4 2 1 6 6 O 1.21285 * 120.00206 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00031 * 180.27936 * 5 4 2 8 8 H 1.09003 * 109.47368 * 59.71836 * 7 5 4 9 9 C 1.53002 * 109.46717 * 299.72236 * 7 5 4 10 10 O 1.45194 * 109.47448 * 179.72274 * 7 5 4 11 11 C 1.34223 * 117.00218 * 209.99622 * 10 7 5 12 12 O 1.20825 * 120.00350 * 0.02562 * 11 10 7 13 13 C 1.50704 * 120.00078 * 179.97438 * 11 10 7 14 14 C 1.50701 * 109.47008 * 180.02562 * 13 11 10 15 15 C 1.37634 * 120.12911 * 264.99751 * 14 13 11 16 16 C 1.38610 * 120.25001 * 179.97438 * 15 14 13 17 17 C 1.38654 * 120.50260 * 0.02687 * 16 15 14 18 18 C 1.37606 * 120.24759 * 0.02562 * 17 16 15 19 19 C 1.40699 * 120.12737 * 84.72719 * 14 13 11 20 20 C 1.41396 * 120.24467 * 359.97438 * 19 14 13 21 21 H 1.08005 * 119.99650 * 329.69974 * 20 19 14 22 22 C 1.39942 * 120.00068 * 149.70416 * 20 19 14 23 23 N 1.30827 * 119.99989 * 162.01789 * 22 20 19 24 24 Si 1.86796 * 120.00117 * 342.01097 * 22 20 19 25 25 H 1.48500 * 109.47026 * 95.40584 * 24 22 20 26 26 H 1.48498 * 109.47151 * 215.40241 * 24 22 20 27 27 H 1.48496 * 109.47133 * 335.40200 * 24 22 20 28 28 H 1.09001 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47159 * 300.00074 * 1 2 3 30 30 H 1.09003 * 109.46819 * 59.99914 * 1 2 3 31 31 H 1.08995 * 109.47532 * 239.99826 * 2 1 3 32 32 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46315 * 300.00042 * 3 2 1 34 34 H 1.08995 * 109.46919 * 59.99450 * 3 2 1 35 35 H 0.96996 * 119.99720 * 264.99983 * 4 2 1 36 36 H 1.08999 * 109.47340 * 299.99802 * 9 7 5 37 37 H 1.09001 * 109.47380 * 60.00316 * 9 7 5 38 38 H 1.08999 * 109.47059 * 179.97438 * 9 7 5 39 39 H 1.09004 * 109.47046 * 299.99929 * 13 11 10 40 40 H 1.09000 * 109.46981 * 60.00017 * 13 11 10 41 41 H 1.07997 * 119.87287 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.75051 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.88157 * 179.97438 * 17 16 15 44 44 H 1.08000 * 120.12265 * 179.97438 * 18 17 16 45 45 H 0.96999 * 119.99873 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 2.1471 -2.0322 1.1945 6 8 1.8581 -2.6678 0.2028 7 6 2.6434 -2.7431 2.4270 8 1 1.9696 -2.5406 3.2595 9 6 4.0471 -2.2428 2.7738 10 8 2.6872 -4.1727 2.1766 11 6 2.4942 -4.9820 3.2298 12 8 2.2946 -4.5117 4.3247 13 6 2.5251 -6.4776 3.0465 14 6 2.2819 -7.1513 4.3724 15 6 3.3452 -7.5550 5.1475 16 6 3.1245 -8.1744 6.3677 17 6 1.8330 -8.3951 6.8214 18 6 0.7548 -8.0009 6.0627 19 6 0.9671 -7.3649 4.8254 20 6 -0.1330 -6.9489 4.0405 21 1 -0.0401 -6.0893 3.3933 22 6 -1.3421 -7.6508 4.1026 23 7 -2.4450 -7.0930 3.6736 24 14 -1.3812 -9.3842 4.7976 25 1 -1.7558 -9.3333 6.2337 26 1 -2.3799 -10.1933 4.0540 27 1 -0.0390 -10.0040 4.6578 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 2.2490 -0.1822 1.9895 36 1 4.7210 -2.4454 1.9413 37 1 4.0143 -1.1697 2.9619 38 1 4.4060 -2.7567 3.6655 39 1 1.7484 -6.7733 2.3412 40 1 3.4996 -6.7762 2.6601 41 1 4.3554 -7.3877 4.8040 42 1 3.9647 -8.4875 6.9695 43 1 1.6726 -8.8790 7.7736 44 1 -0.2502 -8.1742 6.4179 45 1 -3.2831 -7.5794 3.7169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777162847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:42 Heat of formation + Delta-G solvation = -136.774994 kcal Electronic energy + Delta-G solvation = -26837.315089 eV Core-core repulsion = 23011.319787 eV Total energy + Delta-G solvation = -3825.995302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.90452 -40.79061 -39.61592 -37.61163 -36.91665 -35.52378 -34.08384 -33.49310 -32.20708 -31.53589 -28.95955 -28.13326 -26.86463 -25.91598 -23.48484 -23.08254 -22.07186 -21.51638 -21.10702 -19.29833 -18.88764 -18.64531 -17.55937 -17.51726 -17.24713 -16.59895 -16.20045 -16.17106 -15.75524 -15.49205 -15.28307 -15.04618 -14.61793 -14.41131 -14.12025 -13.88430 -13.82199 -13.75536 -13.43328 -13.21547 -13.17114 -13.09091 -12.91928 -12.73212 -12.66707 -12.53331 -12.33428 -12.02023 -11.97470 -11.93301 -11.56542 -11.51383 -11.42462 -10.99304 -10.89705 -10.26448 -9.42814 -9.36523 -8.89583 -6.50442 0.68573 0.88318 1.21186 1.25802 1.35901 1.38800 1.47718 1.49629 2.11833 2.28685 2.62958 3.46219 3.49911 3.71654 3.84247 3.91643 3.94777 4.10634 4.20082 4.22431 4.28057 4.44925 4.51686 4.61433 4.62076 4.67360 4.68796 4.72226 4.89122 4.90911 4.92458 4.97161 5.02481 5.13272 5.23287 5.29163 5.32258 5.33927 5.44603 5.64187 5.83827 5.91446 6.02089 6.25505 6.35718 6.42576 6.74916 6.81054 6.85865 7.06233 8.18925 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003449 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.211803 B = 8116.462552 C = 9411.636958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 C -0.149 4.149 4 N -0.704 5.704 5 C 0.519 3.481 6 O -0.565 6.565 7 C 0.057 3.943 8 H 0.101 0.899 9 C -0.152 4.152 10 O -0.347 6.347 11 C 0.468 3.532 12 O -0.523 6.523 13 C -0.047 4.047 14 C -0.185 4.185 15 C -0.070 4.070 16 C -0.227 4.227 17 C -0.085 4.085 18 C -0.254 4.254 19 C 0.086 3.914 20 C -0.476 4.476 21 H 0.049 0.951 22 C 0.046 3.954 23 N -0.853 5.853 24 Si 0.967 3.033 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.247 1.247 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.417 0.583 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.093 0.907 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.562 13.231 -3.455 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.029 3.971 3 C -0.206 4.206 4 N -0.359 5.359 5 C 0.305 3.695 6 O -0.443 6.443 7 C -0.002 4.002 8 H 0.118 0.882 9 C -0.209 4.209 10 O -0.264 6.264 11 C 0.312 3.688 12 O -0.411 6.411 13 C -0.084 4.084 14 C -0.186 4.186 15 C -0.087 4.087 16 C -0.246 4.246 17 C -0.103 4.103 18 C -0.273 4.273 19 C 0.083 3.917 20 C -0.505 4.505 21 H 0.067 0.933 22 C -0.168 4.168 23 N -0.479 5.479 24 Si 0.791 3.209 25 H -0.188 1.188 26 H -0.206 1.206 27 H -0.171 1.171 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.255 0.745 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.111 0.889 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.016 13.023 -3.946 17.507 hybrid contribution -0.970 -0.277 0.540 1.144 sum 10.046 12.746 -3.405 16.582 Atomic orbital electron populations 1.22212 0.95525 1.00953 1.03685 1.21129 0.94060 0.94587 0.87342 1.22021 1.02158 0.92038 1.04418 1.45907 1.66757 1.04987 1.18257 1.20338 0.77257 0.83593 0.88355 1.90721 1.50478 1.66968 1.36112 1.22692 1.02165 0.78764 0.96566 0.88157 1.22142 0.91787 1.03848 1.03157 1.86631 1.82482 1.18010 1.39258 1.24425 0.71204 0.91318 0.81835 1.90602 1.45301 1.77519 1.27641 1.20067 1.05821 0.84537 0.97980 1.19423 0.93214 1.08929 0.97072 1.20922 0.97601 0.96163 0.94054 1.20908 0.96310 1.08786 0.98594 1.21034 0.92978 0.97650 0.98593 1.21146 0.97951 1.11112 0.97087 1.17701 0.92720 0.89905 0.91350 1.19348 0.95096 1.12723 1.23352 0.93280 1.26865 0.93753 1.03585 0.92596 1.69751 1.00341 1.39485 1.38347 0.85464 0.79533 0.77566 0.78382 1.18789 1.20575 1.17067 0.95706 0.91235 0.89572 0.91233 0.91072 0.89487 0.90522 0.74485 0.90432 0.86699 0.91189 0.88432 0.84785 0.85030 0.84898 0.85668 0.88923 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.48 71.98 0.68 -2.55 16 2 C 0.13 2.37 3.18 44.99 0.14 2.51 16 3 C -0.15 -1.36 9.38 71.99 0.68 -0.69 16 4 N -0.70 -13.97 4.97 -442.51 -2.20 -16.17 16 5 C 0.52 15.71 7.20 87.66 0.63 16.34 16 6 O -0.56 -22.65 16.17 15.75 0.25 -22.39 16 7 C 0.06 1.72 2.98 29.85 0.09 1.81 16 8 H 0.10 3.24 7.16 -2.39 -0.02 3.22 16 9 C -0.15 -3.13 9.45 71.98 0.68 -2.45 16 10 O -0.35 -13.43 9.41 -44.99 -0.42 -13.85 16 11 C 0.47 19.77 7.52 71.24 0.54 20.31 16 12 O -0.52 -24.60 15.25 21.97 0.34 -24.26 16 13 C -0.05 -1.90 5.30 29.10 0.15 -1.75 16 14 C -0.19 -8.39 4.43 -19.41 -0.09 -8.48 16 15 C -0.07 -2.71 9.66 22.22 0.21 -2.49 16 16 C -0.23 -8.58 10.05 22.46 0.23 -8.36 16 17 C -0.08 -3.49 10.02 22.22 0.22 -3.27 16 18 C -0.25 -12.39 7.17 22.73 0.16 -12.23 16 19 C 0.09 4.47 5.10 -21.29 -0.11 4.36 16 20 C -0.48 -27.45 8.55 23.46 0.20 -27.25 16 21 H 0.05 3.10 6.99 -2.91 -0.02 3.08 16 22 C 0.05 2.56 5.41 85.26 0.46 3.02 16 23 N -0.85 -48.84 13.93 21.83 0.30 -48.54 16 24 Si 0.97 44.21 24.52 68.60 1.68 45.89 16 25 H -0.26 -11.46 6.71 99.48 0.67 -10.79 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.25 -11.32 6.85 99.48 0.68 -10.64 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.55 7.58 -2.39 -0.02 1.53 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.42 5.23 8.03 -92.71 -0.74 4.49 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.41 7.57 -2.39 -0.02 1.39 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 4.28 7.15 -2.38 -0.02 4.26 16 40 H 0.13 4.18 8.05 -2.39 -0.02 4.16 16 41 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 42 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.09 4.57 4.74 -2.91 -0.01 4.55 16 45 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 Total: -1.00 -77.10 374.70 5.03 -72.07 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.19 Total: 28.43 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.88 Total: -21.17 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -1.90 Total: -64.71 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: 0.17 Total: -60.51 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.68 Total: 45.89 kcal Total: -77.10 5.03 -72.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.708 kcal (2) G-P(sol) polarization free energy of solvation -77.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds