Wall clock time and date at job start Tue Mar 31 2020 12:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46914 * 2 1 4 4 N 1.46505 * 109.46639 * 119.99821 * 2 1 3 5 5 C 1.46493 * 120.00187 * 299.99958 * 4 2 1 6 6 C 1.34782 * 119.99474 * 120.27754 * 4 2 1 7 7 O 1.21279 * 120.00048 * 359.72595 * 6 4 2 8 8 C 1.50703 * 119.99603 * 179.71946 * 6 4 2 9 9 H 1.08999 * 109.47423 * 305.00570 * 8 6 4 10 10 C 1.53001 * 109.46714 * 65.00269 * 8 6 4 11 11 O 1.45198 * 109.46863 * 185.00084 * 8 6 4 12 12 C 1.34808 * 116.99832 * 150.00339 * 11 8 6 13 13 O 1.21532 * 119.99956 * 359.97438 * 12 11 8 14 14 C 1.47286 * 119.99805 * 179.97438 * 12 11 8 15 15 C 1.39287 * 120.28987 * 357.16188 * 14 12 11 16 16 C 1.38193 * 120.08379 * 179.97438 * 15 14 12 17 17 C 1.38837 * 120.68756 * 0.03083 * 16 15 14 18 18 C 1.37596 * 120.58172 * 359.97438 * 17 16 15 19 19 C 1.40706 * 119.88245 * 359.74025 * 18 17 16 20 20 C 1.40872 * 120.33101 * 180.26132 * 19 18 17 21 21 H 1.07998 * 119.99972 * 214.93032 * 20 19 18 22 22 C 1.40290 * 119.99730 * 34.92200 * 20 19 18 23 23 N 1.30617 * 120.00415 * 9.90663 * 22 20 19 24 24 Si 1.86805 * 119.99796 * 189.90926 * 22 20 19 25 25 H 1.48493 * 109.47236 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46927 * 120.00090 * 24 22 20 27 27 H 1.48498 * 109.46991 * 240.00021 * 24 22 20 28 28 H 1.09008 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47389 * 299.99878 * 1 2 3 30 30 H 1.09001 * 109.47332 * 60.00361 * 1 2 3 31 31 H 1.08998 * 109.46929 * 239.99855 * 2 1 3 32 32 H 1.08998 * 109.47132 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47296 * 299.99700 * 3 2 1 34 34 H 1.09007 * 109.47336 * 60.00278 * 3 2 1 35 35 H 1.08999 * 109.47127 * 90.00369 * 5 4 2 36 36 H 1.09004 * 109.47183 * 210.00294 * 5 4 2 37 37 H 1.09001 * 109.47319 * 330.00474 * 5 4 2 38 38 H 1.08993 * 109.47360 * 59.99997 * 10 8 6 39 39 H 1.09005 * 109.47079 * 179.97438 * 10 8 6 40 40 H 1.09006 * 109.47422 * 299.99626 * 10 8 6 41 41 H 1.08003 * 119.95749 * 0.02562 * 15 14 12 42 42 H 1.08004 * 119.65627 * 179.97438 * 16 15 14 43 43 H 1.07998 * 119.70978 * 179.97438 * 17 16 15 44 44 H 1.07999 * 120.06054 * 180.02562 * 18 17 16 45 45 H 0.96997 * 120.00072 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6643 -0.1901 2.5268 6 6 2.7977 -1.7832 1.0726 7 8 3.0908 -2.1975 -0.0289 8 6 3.3051 -2.4899 2.3031 9 1 3.8336 -1.7792 2.9384 10 6 2.1241 -3.0830 3.0740 11 8 4.2108 -3.5549 1.9107 12 6 5.1968 -3.8691 2.7746 13 8 5.2970 -3.2690 3.8267 14 6 6.1526 -4.9396 2.4434 15 6 6.0084 -5.6709 1.2668 16 6 6.9081 -6.6740 0.9600 17 6 7.9620 -6.9664 1.8150 18 6 8.1308 -6.2617 2.9847 19 6 7.2325 -5.2312 3.3181 20 6 7.3996 -4.5000 4.5105 21 1 6.5349 -4.1547 5.0578 22 6 8.6891 -4.2206 4.9871 23 7 9.7299 -4.4644 4.2366 24 14 8.9176 -3.4998 6.6953 25 1 7.5912 -3.3195 7.3380 26 1 9.7432 -4.4223 7.5154 27 1 9.6003 -2.1852 6.5905 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 0.7374 -0.6593 2.8567 36 1 2.4628 -0.4293 3.2292 37 1 1.5293 0.8907 2.4844 38 1 1.5956 -3.7937 2.4388 39 1 2.4911 -3.5946 3.9639 40 1 1.4442 -2.2835 3.3686 41 1 5.1930 -5.4531 0.5929 42 1 6.7895 -7.2370 0.0459 43 1 8.6556 -7.7540 1.5599 44 1 8.9539 -6.4959 3.6435 45 1 10.6215 -4.2708 4.5660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782606920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:54 Heat of formation + Delta-G solvation = -116.913367 kcal Electronic energy + Delta-G solvation = -27194.227450 eV Core-core repulsion = 23369.093413 eV Total energy + Delta-G solvation = -3825.134037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79160 -40.77725 -39.10288 -37.64564 -37.06601 -35.64413 -34.35513 -32.21720 -31.75590 -31.23513 -28.12969 -28.05595 -27.52819 -26.00001 -24.52984 -23.03182 -22.30417 -21.35520 -20.18937 -19.43630 -18.85556 -18.05411 -17.73941 -17.19057 -16.96813 -16.72463 -16.28849 -15.98272 -15.41597 -15.21060 -14.99500 -14.77953 -14.60101 -14.42634 -14.13863 -13.91630 -13.84281 -13.51863 -13.38257 -13.20832 -13.05724 -12.95378 -12.90586 -12.85164 -12.62116 -12.46398 -12.36908 -12.20937 -12.00365 -11.81198 -11.75113 -11.56067 -11.19659 -10.84426 -10.66015 -9.79797 -9.54840 -9.34689 -8.76411 -6.48576 0.28719 0.96369 1.34038 1.35309 1.37914 1.48322 1.51525 1.98914 2.18991 2.26485 2.70067 3.27030 3.59489 3.75252 3.84022 3.91995 4.11027 4.14568 4.19668 4.30458 4.38160 4.49286 4.57964 4.59371 4.64217 4.66754 4.73033 4.79409 4.87428 4.92404 4.99733 5.04480 5.05118 5.15464 5.23945 5.24402 5.32885 5.42425 5.54420 5.59702 5.77284 5.97315 6.03315 6.15151 6.25844 6.61129 6.75570 6.84828 6.95471 7.18632 8.21640 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003588 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.833597 B = 7802.202810 C = 8926.512979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.122 3.878 3 C -0.156 4.156 4 N -0.600 5.600 5 C 0.057 3.943 6 C 0.518 3.482 7 O -0.568 6.568 8 C 0.062 3.938 9 H 0.104 0.896 10 C -0.158 4.158 11 O -0.351 6.351 12 C 0.506 3.494 13 O -0.535 6.535 14 C -0.277 4.277 15 C -0.041 4.041 16 C -0.239 4.239 17 C -0.082 4.082 18 C -0.172 4.172 19 C 0.123 3.877 20 C -0.456 4.456 21 H 0.095 0.905 22 C 0.032 3.968 23 N -0.812 5.812 24 Si 0.985 3.015 25 H -0.263 1.263 26 H -0.253 1.253 27 H -0.265 1.265 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.418 9.861 -1.654 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 C -0.214 4.214 4 N -0.334 5.334 5 C -0.085 4.085 6 C 0.305 3.695 7 O -0.446 6.446 8 C 0.004 3.996 9 H 0.121 0.879 10 C -0.215 4.215 11 O -0.269 6.269 12 C 0.358 3.642 13 O -0.428 6.428 14 C -0.279 4.279 15 C -0.060 4.060 16 C -0.258 4.258 17 C -0.100 4.100 18 C -0.191 4.191 19 C 0.119 3.881 20 C -0.484 4.484 21 H 0.113 0.887 22 C -0.184 4.184 23 N -0.438 5.438 24 Si 0.805 3.195 25 H -0.187 1.187 26 H -0.177 1.177 27 H -0.190 1.190 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.127 0.873 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.021 9.870 -1.950 18.080 hybrid contribution 0.592 0.231 0.532 0.829 sum -14.429 10.101 -1.418 17.671 Atomic orbital electron populations 1.22069 0.92251 1.02317 1.04187 1.21278 0.95985 0.93559 0.87217 1.22122 1.00619 0.94340 1.04291 1.47929 1.49465 1.26591 1.09406 1.22323 1.02169 1.02370 0.81595 1.20374 0.78540 0.81005 0.89566 1.90678 1.58608 1.66422 1.28902 1.22551 0.92115 0.90167 0.94788 0.87887 1.22246 0.96022 1.03414 0.99851 1.86692 1.39905 1.51656 1.48599 1.21376 0.79029 0.82628 0.81169 1.90654 1.72798 1.53613 1.25728 1.19073 1.03865 1.04138 1.00872 1.21104 0.97385 0.93738 0.93740 1.20806 0.98921 1.03428 1.02616 1.21242 0.96812 0.98311 0.93645 1.21297 1.01481 0.97276 0.99082 1.17817 0.89047 0.90091 0.91102 1.20412 0.94165 1.28084 1.05750 0.88741 1.26950 0.94534 0.94183 1.02768 1.69736 1.00611 1.35616 1.37798 0.85107 0.79341 0.78624 0.76379 1.18673 1.17746 1.19016 0.93399 0.90162 0.89746 0.91130 0.94233 0.89481 0.90071 0.89491 0.90979 0.87879 0.91363 0.91673 0.86319 0.86664 0.85096 0.85336 0.87284 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.19 71.98 0.66 -1.26 16 2 C 0.12 2.35 3.25 44.99 0.15 2.50 16 3 C -0.16 -2.28 9.17 71.98 0.66 -1.62 16 4 N -0.60 -13.55 2.76 -822.60 -2.27 -15.82 16 5 C 0.06 0.78 7.98 127.77 1.02 1.80 16 6 C 0.52 17.23 7.10 87.66 0.62 17.85 16 7 O -0.57 -24.01 15.84 15.72 0.25 -23.77 16 8 C 0.06 2.17 2.17 29.85 0.06 2.23 16 9 H 0.10 3.60 6.15 -2.39 -0.01 3.58 16 10 C -0.16 -4.20 9.27 71.98 0.67 -3.53 16 11 O -0.35 -15.91 8.67 -50.82 -0.44 -16.35 16 12 C 0.51 25.84 7.83 70.20 0.55 26.39 16 13 O -0.54 -28.35 12.77 19.73 0.25 -28.10 16 14 C -0.28 -14.76 5.92 -19.71 -0.12 -14.87 16 15 C -0.04 -1.97 9.60 22.51 0.22 -1.75 16 16 C -0.24 -10.35 10.03 22.40 0.22 -10.13 16 17 C -0.08 -3.65 10.01 22.26 0.22 -3.42 16 18 C -0.17 -8.92 8.62 22.72 0.20 -8.72 16 19 C 0.12 6.88 5.49 -21.10 -0.12 6.76 16 20 C -0.46 -25.68 7.78 23.41 0.18 -25.50 16 21 H 0.09 5.49 5.72 -2.91 -0.02 5.47 16 22 C 0.03 1.66 5.24 85.37 0.45 2.11 16 23 N -0.81 -42.19 11.23 21.88 0.25 -41.94 16 24 Si 0.99 39.43 29.57 68.60 2.03 41.46 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 27 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 28 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.08 0.70 7.67 -2.39 -0.02 0.68 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.83 6.90 -2.39 -0.02 1.81 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.83 6.66 -2.38 -0.02 0.82 16 35 H 0.09 0.82 7.04 -2.39 -0.02 0.80 16 36 H 0.07 1.13 6.06 -2.39 -0.01 1.11 16 37 H 0.10 0.90 6.43 -2.39 -0.02 0.88 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.12 2.08 5.12 -2.38 -0.01 2.07 16 41 H 0.12 5.15 7.60 -2.91 -0.02 5.13 16 42 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 44 H 0.11 5.73 6.68 -2.91 -0.02 5.71 16 45 H 0.29 13.60 8.29 -92.71 -0.77 12.83 16 Total: -1.00 -73.26 366.14 6.72 -66.55 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 1.01 Total: 29.15 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.65 Total: -11.17 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -2.03 Total: -57.76 kcal Atomic # 8 Polarization: -68.28 SS G_CDS: 0.06 Total: -68.22 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -73.26 6.72 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782606920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.368 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds