Wall clock time and date at job start Tue Mar 31 2020 12:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47243 * 2 1 4 4 N 1.46500 * 109.46939 * 120.00039 * 2 1 3 5 5 C 1.46506 * 119.99926 * 299.99954 * 4 2 1 6 6 C 1.34773 * 120.00574 * 120.00118 * 4 2 1 7 7 O 1.21288 * 119.99681 * 0.02562 * 6 4 2 8 8 C 1.50698 * 120.00352 * 179.97438 * 6 4 2 9 9 H 1.09008 * 109.46883 * 60.00398 * 8 6 4 10 10 C 1.52993 * 109.47464 * 300.00175 * 8 6 4 11 11 O 1.45198 * 109.47233 * 179.97438 * 8 6 4 12 12 C 1.34800 * 117.00487 * 210.00514 * 11 8 6 13 13 O 1.21533 * 119.99590 * 359.97438 * 12 11 8 14 14 C 1.47286 * 120.00652 * 180.02562 * 12 11 8 15 15 C 1.39297 * 120.28400 * 354.20201 * 14 12 11 16 16 C 1.38202 * 120.08435 * 179.72568 * 15 14 12 17 17 C 1.38842 * 120.68420 * 0.02562 * 16 15 14 18 18 C 1.37595 * 120.57969 * 359.97438 * 17 16 15 19 19 C 1.40706 * 119.89067 * 359.97438 * 18 17 16 20 20 C 1.40861 * 120.33330 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00404 * 145.80860 * 20 19 18 22 22 C 1.40299 * 119.99674 * 325.81504 * 20 19 18 23 23 N 1.30611 * 120.00164 * 350.75661 * 22 20 19 24 24 Si 1.86806 * 119.99772 * 170.76506 * 22 20 19 25 25 H 1.48504 * 109.47226 * 89.99656 * 24 22 20 26 26 H 1.48498 * 109.46912 * 209.99630 * 24 22 20 27 27 H 1.48499 * 109.47030 * 329.99857 * 24 22 20 28 28 H 1.08997 * 109.47616 * 300.00213 * 1 2 3 29 29 H 1.09000 * 109.46784 * 60.00401 * 1 2 3 30 30 H 1.08997 * 109.47441 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47616 * 239.99787 * 2 1 3 32 32 H 1.09000 * 109.47234 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47300 * 299.99797 * 3 2 1 34 34 H 1.09003 * 109.47622 * 59.99669 * 3 2 1 35 35 H 1.09007 * 109.46900 * 270.00167 * 5 4 2 36 36 H 1.09003 * 109.47021 * 29.99681 * 5 4 2 37 37 H 1.08996 * 109.47400 * 150.00026 * 5 4 2 38 38 H 1.09001 * 109.46947 * 300.00266 * 10 8 6 39 39 H 1.09001 * 109.47168 * 59.99562 * 10 8 6 40 40 H 1.09000 * 109.47324 * 179.97438 * 10 8 6 41 41 H 1.08001 * 119.95373 * 359.74243 * 15 14 12 42 42 H 1.08000 * 119.65455 * 180.02562 * 16 15 14 43 43 H 1.07993 * 119.70806 * 179.97438 * 17 16 15 44 44 H 1.08007 * 120.05521 * 180.02562 * 18 17 16 45 45 H 0.97005 * 120.00271 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 2.7931 -1.7864 1.0727 7 8 3.0866 -2.2005 -0.0289 8 6 3.2958 -2.4964 2.3032 9 1 2.4481 -2.8389 2.8968 10 6 4.1460 -1.5346 3.1355 11 8 4.1019 -3.6377 1.9081 12 6 4.1151 -4.6961 2.7427 13 8 3.4708 -4.6656 3.7728 14 6 4.9111 -5.8890 2.4071 15 6 5.5553 -5.9798 1.1754 16 6 6.3058 -7.0986 0.8670 17 6 6.4276 -8.1423 1.7745 18 6 5.8031 -8.0816 2.9990 19 6 5.0338 -6.9535 3.3387 20 6 4.3909 -6.8814 4.5900 21 1 4.2871 -5.9297 5.0897 22 6 3.8855 -8.0461 5.1871 23 7 3.8472 -9.1628 4.5108 24 14 3.2672 -7.9994 6.9492 25 1 1.8202 -7.6654 6.9574 26 1 3.4722 -9.3276 7.5810 27 1 4.0175 -6.9682 7.7099 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.4156 0.5274 2.8568 36 1 0.6903 0.2975 2.4843 37 1 1.6236 -1.0225 3.2292 38 1 4.9936 -1.1921 2.5418 39 1 3.5405 -0.6781 3.4321 40 1 4.5092 -2.0481 4.0257 41 1 5.4683 -5.1748 0.4607 42 1 6.8027 -7.1616 -0.0899 43 1 7.0177 -9.0093 1.5169 44 1 5.9039 -8.8982 3.6987 45 1 3.4981 -9.9682 4.9238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782606923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:57 Heat of formation + Delta-G solvation = -97.873975 kcal Electronic energy + Delta-G solvation = -27184.730222 eV Core-core repulsion = 23360.421795 eV Total energy + Delta-G solvation = -3824.308427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.42889 -39.18744 -37.31088 -36.47097 -35.34863 -33.78031 -33.30512 -30.82119 -29.96745 -29.47339 -27.47924 -27.25631 -25.64337 -24.67278 -22.86646 -21.37429 -20.86417 -19.65726 -19.16206 -17.62560 -17.26448 -16.58994 -16.41665 -15.60052 -15.38563 -15.17070 -15.02752 -14.32952 -14.21100 -13.96174 -13.74125 -13.34077 -13.24911 -13.00743 -12.85484 -12.62845 -12.48689 -12.41157 -12.32252 -12.13966 -11.84371 -11.61528 -11.55157 -11.22761 -11.14046 -11.07674 -11.05070 -10.69915 -10.62740 -10.23981 -10.10679 -9.72163 -9.47177 -9.34269 -8.83972 -8.82414 -7.64227 -7.42500 -6.88719 -4.49530 2.19536 2.57923 2.63425 2.80354 3.04487 3.10861 3.20183 3.65311 3.86976 3.90095 4.39859 4.59989 4.71600 4.81187 4.83886 5.02083 5.06525 5.11587 5.23607 5.29544 5.35268 5.41901 5.50035 5.55549 5.57102 5.70125 5.80587 5.92749 5.97763 6.07755 6.17259 6.20233 6.38304 6.42115 6.58278 6.93820 7.05919 7.13261 7.18939 7.29675 7.46724 7.64378 7.90010 7.94240 8.14218 8.15871 8.55351 8.70172 8.78212 9.04363 10.05991 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.003535 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.548560 B = 7918.268704 C = 9082.533636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.613 5.613 5 C 0.070 3.930 6 C 0.521 3.479 7 O -0.516 6.516 8 C 0.072 3.928 9 H 0.106 0.894 10 C -0.173 4.173 11 O -0.340 6.340 12 C 0.506 3.494 13 O -0.516 6.516 14 C -0.249 4.249 15 C -0.035 4.035 16 C -0.247 4.247 17 C -0.088 4.088 18 C -0.150 4.150 19 C 0.149 3.851 20 C -0.418 4.418 21 H 0.105 0.895 22 C 0.070 3.930 23 N -0.786 5.786 24 Si 0.919 3.081 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.258 1.258 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 16.043 -2.189 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.349 5.349 5 C -0.073 4.073 6 C 0.308 3.692 7 O -0.390 6.390 8 C 0.013 3.987 9 H 0.123 0.877 10 C -0.230 4.230 11 O -0.258 6.258 12 C 0.357 3.643 13 O -0.407 6.407 14 C -0.252 4.252 15 C -0.053 4.053 16 C -0.266 4.266 17 C -0.107 4.107 18 C -0.169 4.169 19 C 0.145 3.855 20 C -0.445 4.445 21 H 0.123 0.877 22 C -0.149 4.149 23 N -0.411 5.411 24 Si 0.743 3.257 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.182 1.182 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.782 15.586 -2.463 16.488 hybrid contribution -0.533 -0.046 0.812 0.972 sum -5.315 15.540 -1.651 16.507 Atomic orbital electron populations 1.22152 0.94914 1.02658 1.02267 1.21061 0.94044 0.93057 0.89107 1.22129 1.01835 0.95518 1.02259 1.47813 1.51549 1.28401 1.07183 1.22020 1.01034 1.00487 0.83790 1.20460 0.77894 0.80055 0.90792 1.90709 1.56224 1.64488 1.27545 1.22096 0.96247 0.86885 0.93466 0.87655 1.22369 1.00790 0.99212 1.00668 1.86761 1.63858 1.24155 1.50992 1.21517 0.80011 0.81925 0.80860 1.90711 1.43225 1.80951 1.25813 1.18725 1.12298 0.96400 0.97764 1.20905 0.93530 0.96289 0.94577 1.20380 1.09059 0.96848 1.00320 1.20870 0.98525 0.96805 0.94534 1.21296 0.99119 0.99671 0.96837 1.17444 0.88098 0.88888 0.91036 1.20189 1.27745 0.95355 1.01250 0.87733 1.26147 0.94370 0.94393 1.00023 1.69707 1.32870 1.01022 1.37462 0.86122 0.80014 0.78451 0.81089 1.19227 1.20143 1.18213 0.92252 0.91353 0.92086 0.88003 0.92179 0.91432 0.92340 0.91983 0.90781 0.90420 0.91392 0.90072 0.90427 0.87680 0.88734 0.88814 0.86232 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.17 37.16 0.34 -0.98 16 2 C 0.13 1.32 3.25 -67.94 -0.22 1.10 16 3 C -0.16 -1.23 9.19 37.15 0.34 -0.89 16 4 N -0.61 -7.21 2.76 -173.93 -0.48 -7.69 16 5 C 0.07 0.57 7.86 59.85 0.47 1.04 16 6 C 0.52 8.49 7.16 -10.99 -0.08 8.41 16 7 O -0.52 -10.43 15.83 -14.11 -0.22 -10.65 16 8 C 0.07 1.23 2.18 -27.89 -0.06 1.17 16 9 H 0.11 1.79 6.42 -51.92 -0.33 1.46 16 10 C -0.17 -2.34 9.19 37.15 0.34 -2.00 16 11 O -0.34 -7.41 8.68 -47.45 -0.41 -7.82 16 12 C 0.51 12.39 7.82 34.41 0.27 12.65 16 13 O -0.52 -13.12 12.85 -19.29 -0.25 -13.37 16 14 C -0.25 -6.42 5.92 -104.39 -0.62 -7.04 16 15 C -0.03 -0.82 9.60 -39.20 -0.38 -1.20 16 16 C -0.25 -5.54 10.03 -39.37 -0.39 -5.94 16 17 C -0.09 -2.03 10.01 -39.59 -0.40 -2.42 16 18 C -0.15 -3.82 8.62 -38.88 -0.34 -4.15 16 19 C 0.15 4.02 5.51 -106.53 -0.59 3.43 16 20 C -0.42 -11.27 7.68 -37.82 -0.29 -11.56 16 21 H 0.10 2.87 5.92 -52.49 -0.31 2.56 16 22 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 23 N -0.79 -20.03 11.14 55.57 0.62 -19.41 16 24 Si 0.92 19.02 29.57 -169.99 -5.03 14.00 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 28 H 0.06 0.40 6.66 -51.93 -0.35 0.06 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.27 6.90 -51.93 -0.36 0.91 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 35 H 0.06 0.42 6.95 -51.93 -0.36 0.06 16 36 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 37 H 0.08 0.67 6.01 -51.93 -0.31 0.36 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.80 4.53 -51.93 -0.24 0.56 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 2.35 7.62 -52.49 -0.40 1.95 16 42 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.12 3.05 6.60 -52.48 -0.35 2.71 16 45 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -31.69 365.57 -8.20 -39.89 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.25 Total: 6.24 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.69 Total: -6.69 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.14 Total: -27.09 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.88 Total: -31.84 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.69 -8.20 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782606923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.988 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds