Wall clock time and date at job start Tue Mar 31 2020 12:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47243 * 2 1 4 4 N 1.46500 * 109.46939 * 120.00039 * 2 1 3 5 5 C 1.46506 * 119.99926 * 299.99954 * 4 2 1 6 6 C 1.34773 * 120.00574 * 120.00118 * 4 2 1 7 7 O 1.21288 * 119.99681 * 0.02562 * 6 4 2 8 8 C 1.50698 * 120.00352 * 179.97438 * 6 4 2 9 9 H 1.09008 * 109.46883 * 60.00398 * 8 6 4 10 10 C 1.52993 * 109.47464 * 300.00175 * 8 6 4 11 11 O 1.45198 * 109.47233 * 179.97438 * 8 6 4 12 12 C 1.34800 * 117.00487 * 210.00514 * 11 8 6 13 13 O 1.21533 * 119.99590 * 359.97438 * 12 11 8 14 14 C 1.47286 * 120.00652 * 180.02562 * 12 11 8 15 15 C 1.39297 * 120.28400 * 354.20201 * 14 12 11 16 16 C 1.38202 * 120.08435 * 179.72568 * 15 14 12 17 17 C 1.38842 * 120.68420 * 0.02562 * 16 15 14 18 18 C 1.37595 * 120.57969 * 359.97438 * 17 16 15 19 19 C 1.40706 * 119.89067 * 359.97438 * 18 17 16 20 20 C 1.40861 * 120.33330 * 180.02562 * 19 18 17 21 21 H 1.07993 * 120.00404 * 145.80860 * 20 19 18 22 22 C 1.40299 * 119.99674 * 325.81504 * 20 19 18 23 23 N 1.30611 * 120.00164 * 350.75661 * 22 20 19 24 24 Si 1.86806 * 119.99772 * 170.76506 * 22 20 19 25 25 H 1.48504 * 109.47226 * 89.99656 * 24 22 20 26 26 H 1.48498 * 109.46912 * 209.99630 * 24 22 20 27 27 H 1.48499 * 109.47030 * 329.99857 * 24 22 20 28 28 H 1.08997 * 109.47616 * 300.00213 * 1 2 3 29 29 H 1.09000 * 109.46784 * 60.00401 * 1 2 3 30 30 H 1.08997 * 109.47441 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47616 * 239.99787 * 2 1 3 32 32 H 1.09000 * 109.47234 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47300 * 299.99797 * 3 2 1 34 34 H 1.09003 * 109.47622 * 59.99669 * 3 2 1 35 35 H 1.09007 * 109.46900 * 270.00167 * 5 4 2 36 36 H 1.09003 * 109.47021 * 29.99681 * 5 4 2 37 37 H 1.08996 * 109.47400 * 150.00026 * 5 4 2 38 38 H 1.09001 * 109.46947 * 300.00266 * 10 8 6 39 39 H 1.09001 * 109.47168 * 59.99562 * 10 8 6 40 40 H 1.09000 * 109.47324 * 179.97438 * 10 8 6 41 41 H 1.08001 * 119.95373 * 359.74243 * 15 14 12 42 42 H 1.08000 * 119.65455 * 180.02562 * 16 15 14 43 43 H 1.07993 * 119.70806 * 179.97438 * 17 16 15 44 44 H 1.08007 * 120.05521 * 180.02562 * 18 17 16 45 45 H 0.97005 * 120.00271 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 2.7931 -1.7864 1.0727 7 8 3.0866 -2.2005 -0.0289 8 6 3.2958 -2.4964 2.3032 9 1 2.4481 -2.8389 2.8968 10 6 4.1460 -1.5346 3.1355 11 8 4.1019 -3.6377 1.9081 12 6 4.1151 -4.6961 2.7427 13 8 3.4708 -4.6656 3.7728 14 6 4.9111 -5.8890 2.4071 15 6 5.5553 -5.9798 1.1754 16 6 6.3058 -7.0986 0.8670 17 6 6.4276 -8.1423 1.7745 18 6 5.8031 -8.0816 2.9990 19 6 5.0338 -6.9535 3.3387 20 6 4.3909 -6.8814 4.5900 21 1 4.2871 -5.9297 5.0897 22 6 3.8855 -8.0461 5.1871 23 7 3.8472 -9.1628 4.5108 24 14 3.2672 -7.9994 6.9492 25 1 1.8202 -7.6654 6.9574 26 1 3.4722 -9.3276 7.5810 27 1 4.0175 -6.9682 7.7099 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.4156 0.5274 2.8568 36 1 0.6903 0.2975 2.4843 37 1 1.6236 -1.0225 3.2292 38 1 4.9936 -1.1921 2.5418 39 1 3.5405 -0.6781 3.4321 40 1 4.5092 -2.0481 4.0257 41 1 5.4683 -5.1748 0.4607 42 1 6.8027 -7.1616 -0.0899 43 1 7.0177 -9.0093 1.5169 44 1 5.9039 -8.8982 3.6987 45 1 3.4981 -9.9682 4.9238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782606923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:56 Heat of formation + Delta-G solvation = -114.687622 kcal Electronic energy + Delta-G solvation = -27185.459316 eV Core-core repulsion = 23360.421795 eV Total energy + Delta-G solvation = -3825.037522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80325 -40.78292 -39.10318 -37.64437 -37.07551 -35.64845 -34.41699 -32.19846 -31.74082 -31.20824 -28.16024 -28.08844 -27.52114 -25.95762 -24.52713 -23.02967 -22.31646 -21.35351 -20.21702 -19.43111 -18.83649 -18.04772 -17.75777 -17.21653 -16.92525 -16.73995 -16.28721 -15.98099 -15.43172 -15.21680 -15.02136 -14.75774 -14.60571 -14.43100 -14.16023 -13.91807 -13.85466 -13.51128 -13.40521 -13.18094 -13.04464 -12.95399 -12.88032 -12.82818 -12.63035 -12.41495 -12.36186 -12.18394 -11.99977 -11.80422 -11.74361 -11.57055 -11.19882 -10.85512 -10.70042 -9.79619 -9.54965 -9.35377 -8.75450 -6.47639 0.28988 0.96897 1.33365 1.35197 1.38753 1.48217 1.51120 1.97666 2.18608 2.26780 2.70300 3.26739 3.59979 3.76023 3.83713 3.92452 4.11037 4.13851 4.19955 4.30634 4.38210 4.49676 4.58052 4.59359 4.63754 4.66848 4.73246 4.79241 4.87611 4.92675 4.99910 5.04514 5.05987 5.16027 5.24167 5.24716 5.33175 5.42502 5.54359 5.58992 5.77576 5.96868 6.03439 6.15107 6.25193 6.59344 6.75012 6.84533 6.95320 7.17742 8.21935 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.003535 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.548560 B = 7918.268704 C = 9082.533636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.122 3.878 3 C -0.151 4.151 4 N -0.599 5.599 5 C 0.056 3.944 6 C 0.518 3.482 7 O -0.568 6.568 8 C 0.062 3.938 9 H 0.103 0.897 10 C -0.164 4.164 11 O -0.351 6.351 12 C 0.507 3.493 13 O -0.535 6.535 14 C -0.277 4.277 15 C -0.042 4.042 16 C -0.239 4.239 17 C -0.082 4.082 18 C -0.173 4.173 19 C 0.123 3.877 20 C -0.452 4.452 21 H 0.089 0.911 22 C 0.033 3.967 23 N -0.812 5.812 24 Si 0.986 3.014 25 H -0.268 1.268 26 H -0.256 1.256 27 H -0.258 1.258 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 17.836 -1.820 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 C -0.209 4.209 4 N -0.334 5.334 5 C -0.086 4.086 6 C 0.305 3.695 7 O -0.447 6.447 8 C 0.004 3.996 9 H 0.121 0.879 10 C -0.221 4.221 11 O -0.268 6.268 12 C 0.358 3.642 13 O -0.427 6.427 14 C -0.280 4.280 15 C -0.060 4.060 16 C -0.258 4.258 17 C -0.100 4.100 18 C -0.192 4.192 19 C 0.119 3.881 20 C -0.479 4.479 21 H 0.107 0.893 22 C -0.184 4.184 23 N -0.438 5.438 24 Si 0.806 3.194 25 H -0.193 1.193 26 H -0.180 1.180 27 H -0.182 1.182 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.141 0.859 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.129 0.871 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.461 17.426 -2.097 18.382 hybrid contribution -0.350 -0.481 0.556 0.814 sum -5.811 16.946 -1.540 17.981 Atomic orbital electron populations 1.22117 0.92971 1.01948 1.04292 1.21276 0.95509 0.94037 0.87206 1.22073 1.00980 0.93615 1.04205 1.47914 1.49383 1.26644 1.09412 1.22375 1.03512 1.01025 0.81646 1.20373 0.78463 0.81090 0.89538 1.90681 1.58697 1.66375 1.28908 1.22532 0.96350 0.86098 0.94638 0.87923 1.22372 1.00924 0.99496 0.99265 1.86691 1.64650 1.24891 1.50589 1.21387 0.79594 0.82394 0.80784 1.90674 1.43941 1.81559 1.26545 1.19088 1.13162 0.97099 0.98630 1.21103 0.93604 0.97263 0.94045 1.20803 1.07822 0.95727 1.01473 1.21244 0.97515 0.97899 0.93344 1.21319 1.00311 0.99412 0.98120 1.17803 0.88697 0.89964 0.91628 1.20236 1.29828 0.95649 1.02219 0.89291 1.26919 0.94019 0.93590 1.03860 1.69724 1.33321 1.01666 1.39060 0.85151 0.79019 0.79260 0.75978 1.19283 1.17975 1.18202 0.90041 0.89521 0.94149 0.91149 0.93475 0.89738 0.90137 0.89446 0.87816 0.90806 0.91355 0.85854 0.91821 0.86771 0.85139 0.85328 0.87091 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.17 71.98 0.66 -1.54 16 2 C 0.12 2.32 3.25 44.99 0.15 2.47 16 3 C -0.15 -1.92 9.19 71.98 0.66 -1.26 16 4 N -0.60 -13.36 2.76 -822.59 -2.27 -15.63 16 5 C 0.06 0.74 7.86 127.77 1.00 1.75 16 6 C 0.52 17.15 7.16 87.66 0.63 17.77 16 7 O -0.57 -23.97 15.83 15.74 0.25 -23.72 16 8 C 0.06 2.17 2.18 29.85 0.07 2.23 16 9 H 0.10 3.60 6.42 -2.38 -0.02 3.58 16 10 C -0.16 -4.33 9.19 71.98 0.66 -3.67 16 11 O -0.35 -15.90 8.68 -50.73 -0.44 -16.34 16 12 C 0.51 25.93 7.82 70.20 0.55 26.48 16 13 O -0.53 -28.45 12.85 19.73 0.25 -28.19 16 14 C -0.28 -14.80 5.92 -19.71 -0.12 -14.92 16 15 C -0.04 -2.00 9.60 22.52 0.22 -1.78 16 16 C -0.24 -10.41 10.03 22.41 0.22 -10.19 16 17 C -0.08 -3.65 10.01 22.26 0.22 -3.43 16 18 C -0.17 -8.94 8.62 22.72 0.20 -8.74 16 19 C 0.12 6.86 5.51 -21.10 -0.12 6.74 16 20 C -0.45 -25.39 7.68 23.41 0.18 -25.21 16 21 H 0.09 5.14 5.92 -2.91 -0.02 5.12 16 22 C 0.03 1.68 5.25 85.38 0.45 2.13 16 23 N -0.81 -42.18 11.14 21.88 0.24 -41.93 16 24 Si 0.99 39.46 29.57 68.60 2.03 41.49 16 25 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 27 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 28 H 0.08 0.80 6.66 -2.39 -0.02 0.78 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.81 6.90 -2.39 -0.02 1.79 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.08 0.69 7.67 -2.39 -0.02 0.67 16 35 H 0.09 0.80 6.95 -2.38 -0.02 0.78 16 36 H 0.10 0.84 6.43 -2.39 -0.02 0.83 16 37 H 0.07 1.10 6.01 -2.39 -0.01 1.09 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.12 2.13 4.53 -2.39 -0.01 2.12 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.11 5.16 7.62 -2.91 -0.02 5.14 16 42 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 44 H 0.11 5.83 6.60 -2.91 -0.02 5.81 16 45 H 0.29 13.64 8.29 -92.70 -0.77 12.87 16 Total: -1.00 -73.40 365.57 6.70 -66.70 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 1.01 Total: 28.79 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 5.63 Total: -11.16 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -2.03 Total: -57.56 kcal Atomic # 8 Polarization: -68.31 SS G_CDS: 0.06 Total: -68.25 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -73.40 6.70 -66.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782606923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.991 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds