Wall clock time and date at job start Tue Mar 31 2020 12:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47007 * 2 1 4 4 N 1.46499 * 109.47332 * 120.00024 * 2 1 3 5 5 C 1.46494 * 120.00088 * 300.00632 * 4 2 1 6 6 C 1.34777 * 119.99816 * 119.99719 * 4 2 1 7 7 O 1.21277 * 120.00170 * 0.02562 * 6 4 2 8 8 C 1.50705 * 119.99678 * 179.97438 * 6 4 2 9 9 H 1.08998 * 109.47440 * 305.00413 * 8 6 4 10 10 C 1.53005 * 109.46624 * 65.00919 * 8 6 4 11 11 O 1.45207 * 109.46968 * 185.00147 * 8 6 4 12 12 C 1.34777 * 116.99517 * 150.00443 * 11 8 6 13 13 O 1.21508 * 120.00231 * 0.02562 * 12 11 8 14 14 C 1.47508 * 119.99599 * 180.02562 * 12 11 8 15 15 C 1.40064 * 119.90030 * 359.72091 * 14 12 11 16 16 C 1.36303 * 120.10038 * 179.75735 * 15 14 12 17 17 C 1.40893 * 119.89543 * 0.51981 * 16 15 14 18 18 C 1.41100 * 120.09911 * 179.71421 * 17 16 15 19 19 H 1.08004 * 119.99844 * 204.66342 * 18 17 16 20 20 C 1.40245 * 119.99856 * 24.66102 * 18 17 16 21 21 N 1.30635 * 119.99868 * 17.86597 * 20 18 17 22 22 Si 1.86798 * 119.99941 * 197.86413 * 20 18 17 23 23 H 1.48504 * 109.46947 * 90.00262 * 22 20 18 24 24 H 1.48497 * 109.46972 * 210.00015 * 22 20 18 25 25 H 1.48499 * 109.47114 * 330.00314 * 22 20 18 26 26 C 1.40896 * 119.80430 * 359.73687 * 17 16 15 27 27 C 1.36297 * 119.90138 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47603 * 299.99912 * 1 2 3 29 29 H 1.09007 * 109.47367 * 60.00130 * 1 2 3 30 30 H 1.09004 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47481 * 240.00376 * 2 1 3 32 32 H 1.09004 * 109.47315 * 60.00326 * 3 2 1 33 33 H 1.09004 * 109.47013 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47726 * 300.00038 * 3 2 1 35 35 H 1.09000 * 109.47843 * 89.99254 * 5 4 2 36 36 H 1.09005 * 109.47436 * 209.99745 * 5 4 2 37 37 H 1.09000 * 109.47096 * 329.99575 * 5 4 2 38 38 H 1.09002 * 109.47096 * 299.99187 * 10 8 6 39 39 H 1.08994 * 109.47330 * 60.00018 * 10 8 6 40 40 H 1.09007 * 109.46584 * 179.97438 * 10 8 6 41 41 H 1.07999 * 119.95230 * 0.03025 * 15 14 12 42 42 H 1.08006 * 120.05330 * 180.23287 * 16 15 14 43 43 H 0.97000 * 119.99903 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.05292 * 179.97438 * 26 17 16 45 45 H 1.07998 * 119.95535 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6643 -0.1902 2.5267 6 6 2.7931 -1.7864 1.0724 7 8 3.0864 -2.2005 -0.0291 8 6 3.2960 -2.4965 2.3029 9 1 3.8268 -1.7886 2.9395 10 6 2.1114 -3.0853 3.0718 11 8 4.1975 -3.5650 1.9106 12 6 5.1809 -3.8842 2.7753 13 8 5.2817 -3.2863 3.8283 14 6 6.1346 -4.9594 2.4434 15 6 6.0128 -5.6512 1.2316 16 6 6.8948 -6.6421 0.9185 17 6 7.9236 -6.9774 1.8208 18 6 8.8353 -8.0066 1.5038 19 1 9.3484 -8.5356 2.2933 20 6 9.0752 -8.3424 0.1634 21 7 8.7477 -7.5087 -0.7875 22 14 9.8632 -9.9817 -0.2620 23 1 8.8042 -11.0049 -0.4542 24 1 10.6501 -9.8427 -1.5137 25 1 10.7616 -10.4009 0.8436 26 6 8.0389 -6.2825 3.0410 27 6 7.1554 -5.2898 3.3437 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 0.7375 -0.6594 2.8567 36 1 2.4628 -0.4294 3.2292 37 1 1.5294 0.8906 2.4844 38 1 1.4346 -2.2832 3.3663 39 1 1.5807 -3.7931 2.4351 40 1 2.4752 -3.5992 3.9616 41 1 5.2215 -5.3961 0.5423 42 1 6.8025 -7.1725 -0.0178 43 1 8.9133 -7.7412 -1.7146 44 1 8.8257 -6.5365 3.7359 45 1 7.2428 -4.7568 4.2790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784406012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:05 Heat of formation + Delta-G solvation = -108.106447 kcal Electronic energy + Delta-G solvation = -26500.006017 eV Core-core repulsion = 22675.253877 eV Total energy + Delta-G solvation = -3824.752140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52910 -39.34166 -37.46731 -36.58053 -35.62506 -33.94042 -33.35367 -30.98051 -30.08531 -29.48343 -27.51382 -27.27921 -26.22823 -24.75980 -22.68357 -21.29705 -20.89653 -19.90132 -19.20685 -17.65196 -17.53904 -16.80442 -16.55802 -15.77470 -15.64491 -15.28839 -15.18434 -14.32594 -14.16161 -13.95200 -13.79548 -13.39070 -13.34649 -13.07431 -12.92718 -12.61704 -12.53676 -12.45551 -12.37251 -12.10961 -12.02043 -11.88884 -11.61238 -11.49208 -11.31143 -11.27887 -11.10573 -10.97661 -10.69730 -10.37772 -10.12120 -9.64200 -9.59356 -9.41764 -9.35826 -8.88732 -7.73074 -7.62522 -7.07568 -4.66242 2.04995 2.50027 2.54129 2.88087 2.94350 2.97286 3.06036 3.50094 3.62639 3.71984 4.30769 4.47857 4.65641 4.76187 4.77094 4.93848 4.98195 4.99004 5.15649 5.26007 5.30826 5.34083 5.43810 5.50303 5.53830 5.66050 5.68625 5.88118 5.93859 5.94777 6.07678 6.23973 6.29032 6.36165 6.76072 6.83242 6.97543 7.00967 7.11062 7.16121 7.44016 7.68338 7.79933 7.86523 8.02262 8.08745 8.37749 8.58107 8.70441 8.71950 9.83532 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.002603 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.102953 B =10754.486602 C =11551.266907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 C -0.162 4.162 4 N -0.612 5.612 5 C 0.070 3.930 6 C 0.519 3.481 7 O -0.512 6.512 8 C 0.071 3.929 9 H 0.105 0.895 10 C -0.169 4.169 11 O -0.331 6.331 12 C 0.515 3.485 13 O -0.554 6.554 14 C -0.275 4.275 15 C -0.040 4.040 16 C -0.185 4.185 17 C 0.132 3.868 18 C -0.434 4.434 19 H 0.088 0.912 20 C 0.072 3.928 21 N -0.761 5.761 22 Si 0.917 3.083 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.240 4.240 27 C -0.017 4.017 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.289 0.711 44 H 0.101 0.899 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.661 11.829 1.967 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.349 5.349 5 C -0.073 4.073 6 C 0.306 3.694 7 O -0.385 6.385 8 C 0.012 3.988 9 H 0.123 0.877 10 C -0.226 4.226 11 O -0.247 6.247 12 C 0.368 3.632 13 O -0.448 6.448 14 C -0.277 4.277 15 C -0.059 4.059 16 C -0.204 4.204 17 C 0.128 3.872 18 C -0.461 4.461 19 H 0.106 0.894 20 C -0.151 4.151 21 N -0.384 5.384 22 Si 0.740 3.260 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.259 4.259 27 C -0.035 4.035 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.140 0.860 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.464 11.816 1.378 17.967 hybrid contribution 0.285 -0.400 -0.104 0.502 sum -13.179 11.416 1.274 17.482 Atomic orbital electron populations 1.22129 0.94803 1.02521 1.02292 1.21077 0.94077 0.93081 0.89053 1.22152 1.01986 0.95539 1.02297 1.47814 1.51659 1.28200 1.07239 1.21968 1.01217 1.00399 0.83719 1.20387 0.78199 0.80089 0.90714 1.90733 1.55831 1.64510 1.27425 1.22185 0.91907 0.90723 0.93968 0.87739 1.22263 0.96879 1.02400 1.01049 1.86771 1.39933 1.49822 1.48208 1.21703 0.78438 0.82277 0.80762 1.90670 1.74020 1.54244 1.25900 1.18166 1.03237 1.05285 1.01018 1.20702 0.97132 0.94199 0.93849 1.21017 0.96213 1.01310 1.01885 1.17859 0.89833 0.89051 0.90427 1.19941 1.19546 1.14076 0.92514 0.89441 1.26173 0.94365 0.98374 0.96165 1.69748 1.32796 1.33725 1.02097 0.86160 0.79764 0.81144 0.78955 1.18806 1.19912 1.18202 1.20673 1.02878 1.01693 1.00685 1.20332 0.92055 0.94972 0.96186 0.92342 0.91378 0.92171 0.87935 0.92274 0.92083 0.91283 0.92075 0.90604 0.90664 0.90280 0.91136 0.90495 0.87797 0.86024 0.89932 0.88047 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.19 37.15 0.34 -0.83 16 2 C 0.13 1.27 3.25 -67.94 -0.22 1.05 16 3 C -0.16 -1.26 9.17 37.16 0.34 -0.91 16 4 N -0.61 -6.84 2.76 -173.94 -0.48 -7.32 16 5 C 0.07 0.52 7.98 59.84 0.48 1.00 16 6 C 0.52 8.14 7.10 -10.98 -0.08 8.07 16 7 O -0.51 -10.19 15.84 -14.05 -0.22 -10.41 16 8 C 0.07 1.14 2.17 -27.88 -0.06 1.08 16 9 H 0.11 1.62 6.15 -51.93 -0.32 1.30 16 10 C -0.17 -2.13 9.27 37.16 0.34 -1.78 16 11 O -0.33 -6.91 8.65 -47.37 -0.41 -7.32 16 12 C 0.52 11.68 7.86 34.51 0.27 11.95 16 13 O -0.55 -12.68 15.58 -19.27 -0.30 -12.98 16 14 C -0.27 -6.66 5.89 -104.75 -0.62 -7.28 16 15 C -0.04 -0.98 9.55 -39.59 -0.38 -1.36 16 16 C -0.19 -4.75 8.63 -39.27 -0.34 -5.09 16 17 C 0.13 3.39 5.58 -106.80 -0.60 2.80 16 18 C -0.43 -10.76 9.04 -37.74 -0.34 -11.11 16 19 H 0.09 2.05 7.91 -52.48 -0.42 1.63 16 20 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 21 N -0.76 -18.52 10.95 55.56 0.61 -17.92 16 22 Si 0.92 17.25 29.60 -169.99 -5.03 12.22 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 26 C -0.24 -5.81 9.73 -39.28 -0.38 -6.19 16 27 C -0.02 -0.40 9.52 -39.59 -0.38 -0.78 16 28 H 0.06 0.35 7.67 -51.93 -0.40 -0.04 16 29 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 1.26 6.90 -51.93 -0.36 0.90 16 32 H 0.06 0.37 6.66 -51.93 -0.35 0.03 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.37 7.02 -51.93 -0.36 0.00 16 36 H 0.08 0.58 6.07 -51.93 -0.32 0.27 16 37 H 0.07 0.42 6.43 -51.93 -0.33 0.08 16 38 H 0.08 0.71 5.12 -51.93 -0.27 0.45 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 41 H 0.10 2.45 7.59 -52.49 -0.40 2.05 16 42 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 43 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 44 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 45 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -30.69 370.29 -8.29 -38.98 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.33 Total: 6.96 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.70 Total: -7.79 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.13 Total: -25.23 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.93 Total: -30.71 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.69 -8.29 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784406012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.127 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds