Wall clock time and date at job start Tue Mar 31 2020 12:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47007 * 2 1 4 4 N 1.46499 * 109.47332 * 120.00024 * 2 1 3 5 5 C 1.46494 * 120.00088 * 300.00632 * 4 2 1 6 6 C 1.34777 * 119.99816 * 119.99719 * 4 2 1 7 7 O 1.21277 * 120.00170 * 0.02562 * 6 4 2 8 8 C 1.50705 * 119.99678 * 179.97438 * 6 4 2 9 9 H 1.08998 * 109.47440 * 305.00413 * 8 6 4 10 10 C 1.53005 * 109.46624 * 65.00919 * 8 6 4 11 11 O 1.45207 * 109.46968 * 185.00147 * 8 6 4 12 12 C 1.34777 * 116.99517 * 150.00443 * 11 8 6 13 13 O 1.21508 * 120.00231 * 0.02562 * 12 11 8 14 14 C 1.47508 * 119.99599 * 180.02562 * 12 11 8 15 15 C 1.40064 * 119.90030 * 359.72091 * 14 12 11 16 16 C 1.36303 * 120.10038 * 179.75735 * 15 14 12 17 17 C 1.40893 * 119.89543 * 0.51981 * 16 15 14 18 18 C 1.41100 * 120.09911 * 179.71421 * 17 16 15 19 19 H 1.08004 * 119.99844 * 204.66342 * 18 17 16 20 20 C 1.40245 * 119.99856 * 24.66102 * 18 17 16 21 21 N 1.30635 * 119.99868 * 17.86597 * 20 18 17 22 22 Si 1.86798 * 119.99941 * 197.86413 * 20 18 17 23 23 H 1.48504 * 109.46947 * 90.00262 * 22 20 18 24 24 H 1.48497 * 109.46972 * 210.00015 * 22 20 18 25 25 H 1.48499 * 109.47114 * 330.00314 * 22 20 18 26 26 C 1.40896 * 119.80430 * 359.73687 * 17 16 15 27 27 C 1.36297 * 119.90138 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47603 * 299.99912 * 1 2 3 29 29 H 1.09007 * 109.47367 * 60.00130 * 1 2 3 30 30 H 1.09004 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47481 * 240.00376 * 2 1 3 32 32 H 1.09004 * 109.47315 * 60.00326 * 3 2 1 33 33 H 1.09004 * 109.47013 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47726 * 300.00038 * 3 2 1 35 35 H 1.09000 * 109.47843 * 89.99254 * 5 4 2 36 36 H 1.09005 * 109.47436 * 209.99745 * 5 4 2 37 37 H 1.09000 * 109.47096 * 329.99575 * 5 4 2 38 38 H 1.09002 * 109.47096 * 299.99187 * 10 8 6 39 39 H 1.08994 * 109.47330 * 60.00018 * 10 8 6 40 40 H 1.09007 * 109.46584 * 179.97438 * 10 8 6 41 41 H 1.07999 * 119.95230 * 0.03025 * 15 14 12 42 42 H 1.08006 * 120.05330 * 180.23287 * 16 15 14 43 43 H 0.97000 * 119.99903 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.05292 * 179.97438 * 26 17 16 45 45 H 1.07998 * 119.95535 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6643 -0.1902 2.5267 6 6 2.7931 -1.7864 1.0724 7 8 3.0864 -2.2005 -0.0291 8 6 3.2960 -2.4965 2.3029 9 1 3.8268 -1.7886 2.9395 10 6 2.1114 -3.0853 3.0718 11 8 4.1975 -3.5650 1.9106 12 6 5.1809 -3.8842 2.7753 13 8 5.2817 -3.2863 3.8283 14 6 6.1346 -4.9594 2.4434 15 6 6.0128 -5.6512 1.2316 16 6 6.8948 -6.6421 0.9185 17 6 7.9236 -6.9774 1.8208 18 6 8.8353 -8.0066 1.5038 19 1 9.3484 -8.5356 2.2933 20 6 9.0752 -8.3424 0.1634 21 7 8.7477 -7.5087 -0.7875 22 14 9.8632 -9.9817 -0.2620 23 1 8.8042 -11.0049 -0.4542 24 1 10.6501 -9.8427 -1.5137 25 1 10.7616 -10.4009 0.8436 26 6 8.0389 -6.2825 3.0410 27 6 7.1554 -5.2898 3.3437 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 0.7375 -0.6594 2.8567 36 1 2.4628 -0.4294 3.2292 37 1 1.5294 0.8906 2.4844 38 1 1.4346 -2.2832 3.3663 39 1 1.5807 -3.7931 2.4351 40 1 2.4752 -3.5992 3.9616 41 1 5.2215 -5.3961 0.5423 42 1 6.8025 -7.1725 -0.0178 43 1 8.9133 -7.7412 -1.7146 44 1 8.8257 -6.5365 3.7359 45 1 7.2428 -4.7568 4.2790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784406012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:04 Heat of formation + Delta-G solvation = -123.541254 kcal Electronic energy + Delta-G solvation = -26500.675321 eV Core-core repulsion = 22675.253877 eV Total energy + Delta-G solvation = -3825.421444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86106 -40.82217 -39.28739 -37.72566 -37.19883 -35.77419 -34.38853 -32.37189 -31.59871 -31.40162 -28.16427 -28.11637 -27.95244 -25.94507 -24.29749 -22.89530 -22.46310 -21.50499 -20.20064 -19.42305 -19.08824 -18.21750 -17.86027 -17.30536 -17.06292 -16.79329 -16.33873 -15.79284 -15.42387 -15.23428 -15.01572 -14.83354 -14.68375 -14.29819 -14.04725 -13.95512 -13.89878 -13.64187 -13.40413 -13.34007 -13.20404 -13.05441 -12.94569 -12.88276 -12.66671 -12.55124 -12.41526 -12.22110 -11.86646 -11.83364 -11.80044 -11.44873 -11.32483 -11.16113 -10.81656 -9.80514 -9.66170 -9.55961 -8.86423 -6.57359 0.19922 1.11520 1.30530 1.34483 1.36212 1.40770 1.54364 1.85283 2.13831 2.21239 2.65736 3.24641 3.59927 3.69986 3.80531 3.90639 4.07118 4.11135 4.17867 4.29768 4.33512 4.39776 4.52260 4.57638 4.63623 4.66642 4.72983 4.83130 4.90506 4.91554 4.96434 4.99365 5.04501 5.09585 5.19225 5.23205 5.31926 5.32420 5.53718 5.54533 5.78264 5.88139 5.94480 6.12057 6.14654 6.47109 6.67802 6.79794 6.90841 6.99143 8.08237 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.002603 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.102953 B =10754.486602 C =11551.266907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.121 3.879 3 C -0.155 4.155 4 N -0.599 5.599 5 C 0.056 3.944 6 C 0.515 3.485 7 O -0.569 6.569 8 C 0.062 3.938 9 H 0.112 0.888 10 C -0.160 4.160 11 O -0.348 6.348 12 C 0.521 3.479 13 O -0.559 6.559 14 C -0.293 4.293 15 C -0.042 4.042 16 C -0.203 4.203 17 C 0.105 3.895 18 C -0.455 4.455 19 H 0.097 0.903 20 C 0.032 3.968 21 N -0.792 5.792 22 Si 0.994 3.006 23 H -0.259 1.259 24 H -0.266 1.266 25 H -0.250 1.250 26 C -0.248 4.248 27 C -0.018 4.018 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.299 0.701 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.741 12.726 2.951 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 C -0.213 4.213 4 N -0.333 5.333 5 C -0.085 4.085 6 C 0.302 3.698 7 O -0.448 6.448 8 C 0.004 3.996 9 H 0.129 0.871 10 C -0.217 4.217 11 O -0.265 6.265 12 C 0.374 3.626 13 O -0.454 6.454 14 C -0.296 4.296 15 C -0.061 4.061 16 C -0.223 4.223 17 C 0.102 3.898 18 C -0.481 4.481 19 H 0.115 0.885 20 C -0.188 4.188 21 N -0.415 5.415 22 Si 0.813 3.187 23 H -0.184 1.184 24 H -0.190 1.190 25 H -0.174 1.174 26 C -0.267 4.267 27 C -0.037 4.037 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.592 12.779 2.396 19.544 hybrid contribution 0.531 -0.529 -0.422 0.860 sum -14.061 12.250 1.974 18.753 Atomic orbital electron populations 1.22071 0.92332 1.02247 1.04217 1.21269 0.95929 0.93658 0.87243 1.22113 1.00670 0.94184 1.04308 1.47925 1.49593 1.26337 1.09454 1.22344 1.02240 1.02431 0.81478 1.20436 0.78670 0.81078 0.89640 1.90708 1.58494 1.66515 1.29080 1.22637 0.92271 0.89896 0.94777 0.87065 1.22272 0.95980 1.03531 0.99927 1.86715 1.40155 1.51458 1.48171 1.21356 0.78630 0.81876 0.80781 1.90641 1.74365 1.54390 1.26016 1.18427 1.04130 1.06026 1.00978 1.20735 0.96973 0.94112 0.94256 1.20994 0.97142 1.02190 1.01939 1.18202 0.90422 0.90012 0.91197 1.20287 1.19722 1.14293 0.93839 0.88471 1.27127 0.94442 1.01831 0.95384 1.69789 1.33115 1.35656 1.02941 0.85007 0.78823 0.75852 0.79005 1.18375 1.18995 1.17354 1.20890 1.03516 1.01699 1.00639 1.20510 0.91696 0.94854 0.96609 0.89998 0.89859 0.93537 0.91376 0.89897 0.94111 0.89643 0.89592 0.90609 0.87817 0.86113 0.91674 0.91198 0.87772 0.87101 0.88931 0.86311 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 2 C 0.12 2.25 3.25 44.99 0.15 2.39 16 3 C -0.15 -2.09 9.17 71.98 0.66 -1.43 16 4 N -0.60 -12.59 2.76 -822.61 -2.27 -14.87 16 5 C 0.06 0.65 7.98 127.77 1.02 1.67 16 6 C 0.51 16.37 7.10 87.66 0.62 16.99 16 7 O -0.57 -23.95 15.84 15.73 0.25 -23.70 16 8 C 0.06 2.00 2.17 29.85 0.06 2.06 16 9 H 0.11 3.38 6.15 -2.39 -0.01 3.36 16 10 C -0.16 -3.83 9.27 71.98 0.67 -3.16 16 11 O -0.35 -14.99 8.65 -50.50 -0.44 -15.43 16 12 C 0.52 24.02 7.86 70.27 0.55 24.57 16 13 O -0.56 -25.50 15.58 19.81 0.31 -25.19 16 14 C -0.29 -14.59 5.89 -19.95 -0.12 -14.71 16 15 C -0.04 -2.15 9.55 22.26 0.21 -1.94 16 16 C -0.20 -10.89 8.63 22.47 0.19 -10.69 16 17 C 0.11 5.56 5.58 -21.28 -0.12 5.44 16 18 C -0.46 -22.80 9.04 23.46 0.21 -22.58 16 19 H 0.10 4.53 7.91 -2.91 -0.02 4.50 16 20 C 0.03 1.51 5.14 85.36 0.44 1.95 16 21 N -0.79 -39.16 10.95 21.87 0.24 -38.92 16 22 Si 0.99 34.70 29.60 68.60 2.03 36.73 16 23 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 24 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 25 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 26 C -0.25 -12.17 9.73 22.47 0.22 -11.95 16 27 C -0.02 -0.87 9.52 22.26 0.21 -0.66 16 28 H 0.08 0.64 7.67 -2.39 -0.02 0.62 16 29 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.75 6.90 -2.39 -0.02 1.74 16 32 H 0.08 0.73 6.66 -2.38 -0.02 0.71 16 33 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 0.64 7.02 -2.39 -0.02 0.62 16 36 H 0.08 0.93 6.07 -2.38 -0.01 0.92 16 37 H 0.10 0.67 6.43 -2.39 -0.02 0.66 16 38 H 0.12 1.80 5.12 -2.39 -0.01 1.79 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.10 5.20 7.59 -2.91 -0.02 5.18 16 42 H 0.11 6.05 6.16 -2.91 -0.02 6.03 16 43 H 0.30 13.18 8.29 -92.71 -0.77 12.41 16 44 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 45 H 0.12 5.19 7.63 -2.91 -0.02 5.17 16 Total: -1.00 -69.95 370.29 6.77 -63.18 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 1.00 Total: 31.44 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 5.65 Total: -13.26 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -2.03 Total: -53.79 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: 0.12 Total: -64.32 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Total: -69.95 6.77 -63.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784406012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.358 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds