Wall clock time and date at job start Tue Mar 31 2020 12:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.46788 * 2 1 4 4 C 1.46893 * 110.99665 * 287.93157 * 3 2 1 5 5 C 1.50710 * 109.46861 * 160.37012 * 4 3 2 6 6 H 1.07995 * 119.99690 * 4.90013 * 5 4 3 7 7 C 1.37875 * 119.99959 * 184.90471 * 5 4 3 8 8 N 1.31509 * 120.00256 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00059 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47307 * 90.00003 * 9 7 5 11 11 H 1.48501 * 109.46917 * 209.99966 * 9 7 5 12 12 H 1.48505 * 109.46896 * 329.99617 * 9 7 5 13 13 C 1.46905 * 110.99547 * 163.98080 * 3 2 1 14 14 N 1.46500 * 109.47447 * 293.94941 * 13 3 2 15 15 N 1.28733 * 125.34214 * 270.00942 * 14 13 3 16 16 N 1.28988 * 108.94218 * 179.72300 * 15 14 13 17 17 C 1.34048 * 107.26878 * 0.42695 * 16 15 14 18 18 C 1.48452 * 126.67298 * 179.83257 * 17 16 15 19 19 C 1.39332 * 120.08782 * 179.66520 * 18 17 16 20 20 C 1.37962 * 119.90462 * 180.02562 * 19 18 17 21 21 C 1.38567 * 120.09390 * 359.97252 * 20 19 18 22 22 F 1.35095 * 119.90741 * 180.28040 * 21 20 19 23 23 C 1.38521 * 120.18311 * 0.02562 * 21 20 19 24 24 C 1.50697 * 119.95751 * 179.97438 * 23 21 20 25 25 C 1.38011 * 120.09373 * 0.02562 * 23 21 20 26 26 N 1.28872 * 125.34003 * 90.00054 * 14 13 3 27 27 H 1.08997 * 109.47353 * 299.26977 * 1 2 3 28 28 H 1.08995 * 109.47032 * 59.27531 * 1 2 3 29 29 H 1.09006 * 109.46460 * 179.27027 * 1 2 3 30 30 H 1.08997 * 109.47514 * 239.99598 * 2 1 3 31 31 H 1.09006 * 109.46885 * 119.99376 * 2 1 3 32 32 H 1.08996 * 109.47587 * 280.36686 * 4 3 2 33 33 H 1.08994 * 109.47279 * 40.36853 * 4 3 2 34 34 H 0.96996 * 120.00838 * 180.02562 * 8 7 5 35 35 H 1.09009 * 109.46681 * 173.95221 * 13 3 2 36 36 H 1.08995 * 109.47444 * 53.95429 * 13 3 2 37 37 H 1.07998 * 120.05010 * 0.02562 * 19 18 17 38 38 H 1.08005 * 119.95709 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47072 * 89.99835 * 24 23 21 40 40 H 1.08993 * 109.47747 * 209.99962 * 24 23 21 41 41 H 1.09006 * 109.47280 * 330.00318 * 24 23 21 42 42 H 1.07996 * 120.04729 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7969 2.0220 -1.3048 5 6 1.8482 3.5201 -1.1477 6 1 2.1062 3.9543 -0.1932 7 6 1.5656 4.3360 -2.2226 8 7 1.6098 5.6431 -2.0855 9 14 1.1184 3.5847 -3.8734 10 1 -0.3525 3.3944 -3.9486 11 1 1.5567 4.4913 -4.9648 12 1 1.7956 2.2711 -4.0191 13 6 3.4379 1.4420 0.3785 14 7 3.5886 1.0191 1.7730 15 7 3.5411 1.7983 2.7967 16 7 3.7056 1.0955 3.8657 17 6 3.8717 -0.1784 3.4829 18 6 4.0982 -1.3480 4.3686 19 6 4.2471 -2.6205 3.8209 20 6 4.4569 -3.7049 4.6476 21 6 4.5201 -3.5298 6.0207 22 9 4.7313 -4.5935 6.8263 23 6 4.3726 -2.2664 6.5693 24 6 4.4417 -2.0820 8.0633 25 6 4.1614 -1.1764 5.7495 26 7 3.7893 -0.1912 2.1674 27 1 -0.3634 0.5024 0.8964 28 1 -0.3633 0.5250 -0.8834 29 1 -0.3632 -1.0277 -0.0131 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.5718 1.7031 -2.0018 33 1 0.8197 1.7303 -1.6895 34 1 1.4106 6.2172 -2.8415 35 1 3.8030 2.4630 0.2669 36 1 4.0131 0.7780 -0.2667 37 1 4.1984 -2.7577 2.7508 38 1 4.5720 -4.6917 4.2240 39 1 5.4734 -1.8908 8.3584 40 1 3.8180 -1.2368 8.3543 41 1 4.0838 -2.9850 8.5579 42 1 4.0469 -0.1917 6.1779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794622543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:38 Heat of formation + Delta-G solvation = 117.209586 kcal Electronic energy + Delta-G solvation = -25853.619443 eV Core-core repulsion = 21979.762936 eV Total energy + Delta-G solvation = -3873.856507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.20267 -44.06800 -39.40917 -37.69617 -34.33860 -33.72421 -32.72340 -32.70056 -31.06176 -30.15537 -28.19972 -27.33864 -25.73123 -24.41596 -22.99200 -22.67541 -22.15614 -21.10529 -20.27093 -17.87500 -17.56064 -17.28107 -16.90073 -16.71867 -16.11126 -15.97443 -15.04635 -14.63477 -14.49751 -14.18823 -13.84304 -13.76358 -13.69695 -13.63310 -13.40794 -13.10042 -12.81547 -12.57477 -12.45542 -12.22425 -12.16325 -11.77447 -11.61309 -11.45761 -11.31959 -11.10345 -10.84851 -10.77832 -10.70179 -10.62427 -10.31150 -10.07645 -9.51062 -9.22795 -8.72802 -8.62728 -7.93664 -6.20217 -4.20966 0.47728 0.91540 1.49206 2.14575 2.35957 3.16497 3.23391 3.25685 3.41684 3.69528 3.92836 4.20682 4.25038 4.28026 4.43330 4.54619 4.85339 4.91810 5.08998 5.12220 5.21151 5.29660 5.29990 5.38987 5.48335 5.53683 5.58834 5.69231 5.74962 5.79423 5.84376 5.84951 5.97549 6.04545 6.16033 6.18376 6.31928 6.43972 6.49901 6.52571 6.57698 7.27519 7.42204 7.58476 8.41182 8.56290 8.88572 9.38530 10.92245 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.002557 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.562363 B =10947.623977 C =11488.595090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 N -0.535 5.535 4 C 0.170 3.830 5 C -0.523 4.523 6 H 0.085 0.915 7 C 0.074 3.926 8 N -0.890 5.890 9 Si 0.872 3.128 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.299 3.701 14 N -0.116 5.116 15 N -0.029 5.029 16 N -0.286 5.286 17 C 0.191 3.809 18 C -0.005 4.005 19 C -0.062 4.062 20 C -0.151 4.151 21 C 0.106 3.894 22 F -0.137 7.137 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.054 4.054 26 N -0.302 5.302 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.068 0.932 32 H -0.002 1.002 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.144 0.856 36 H 0.083 0.917 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -18.537 12.619 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 N -0.262 5.262 4 C 0.045 3.955 5 C -0.561 4.561 6 H 0.103 0.897 7 C -0.129 4.129 8 N -0.528 5.528 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.090 3.910 14 N -0.030 5.030 15 N -0.023 5.023 16 N -0.157 5.157 17 C -0.088 4.088 18 C -0.009 4.009 19 C -0.082 4.082 20 C -0.170 4.170 21 C 0.086 3.914 22 F -0.115 7.115 23 C -0.122 4.122 24 C -0.170 4.170 25 C -0.074 4.074 26 N -0.154 5.154 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.016 0.984 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.101 0.899 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.468 -17.417 12.602 22.182 hybrid contribution 0.150 -1.337 -1.479 1.999 sum 5.618 -18.754 11.124 22.517 Atomic orbital electron populations 1.21728 0.94597 1.00606 1.03102 1.22247 0.96886 0.89370 1.00436 1.61887 1.13213 1.16172 1.34888 1.20242 0.96512 0.96173 0.82619 1.20998 1.48296 0.87667 0.99166 0.89711 1.24874 0.94776 0.94695 0.98530 1.69875 1.48447 1.02892 1.31597 0.86923 0.79397 0.79491 0.84295 1.19987 1.20949 1.19265 1.22814 0.93195 1.03556 0.71443 1.50459 1.40568 1.00985 1.11000 1.79049 1.13314 1.20690 0.89198 1.76028 1.18227 1.01563 1.19915 1.23386 1.04104 0.93312 0.88006 1.17260 1.03615 0.88899 0.91083 1.21037 0.96133 0.90210 1.00791 1.21031 1.04101 1.00533 0.91315 1.17672 1.02113 0.83341 0.88258 1.91484 1.92128 1.54796 1.73124 1.19836 1.03379 0.91404 0.97553 1.20738 1.03086 1.03369 0.89846 1.20982 0.96015 0.99136 0.91255 1.74750 1.21373 1.05866 1.13369 0.92144 0.91972 0.92921 0.94790 0.91338 0.98449 0.94144 0.92366 0.83868 0.89945 0.83958 0.84092 0.90599 0.90531 0.91093 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.99 37.16 0.37 -1.84 16 2 C 0.04 0.63 5.60 -3.82 -0.02 0.61 16 3 N -0.53 -10.20 4.52 -239.97 -1.08 -11.28 16 4 C 0.17 3.65 3.65 -4.97 -0.02 3.63 16 5 C -0.52 -13.65 9.17 -34.44 -0.32 -13.97 16 6 H 0.08 2.45 7.89 -52.49 -0.41 2.04 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 8 N -0.89 -25.90 13.96 55.43 0.77 -25.12 16 9 Si 0.87 19.90 27.37 -169.99 -4.65 15.25 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -5.78 6.69 56.52 0.38 -5.40 16 13 C 0.30 5.09 6.12 -63.31 -0.39 4.70 16 14 N -0.12 -2.00 3.83 -13.29 -0.05 -2.05 16 15 N -0.03 -0.54 13.23 60.35 0.80 0.25 16 16 N -0.29 -4.91 12.23 32.15 0.39 -4.51 16 17 C 0.19 2.92 7.93 -156.31 -1.24 1.68 16 18 C -0.01 -0.06 5.88 -104.89 -0.62 -0.68 16 19 C -0.06 -0.63 9.70 -39.28 -0.38 -1.01 16 20 C -0.15 -1.35 10.01 -39.56 -0.40 -1.75 16 21 C 0.11 1.03 7.24 -39.36 -0.29 0.74 16 22 F -0.14 -1.34 16.46 2.25 0.04 -1.31 16 23 C -0.12 -1.14 5.88 -104.60 -0.62 -1.76 16 24 C -0.11 -0.81 9.83 36.00 0.35 -0.46 16 25 C -0.05 -0.57 9.35 -39.27 -0.37 -0.94 16 26 N -0.30 -4.77 10.34 32.17 0.33 -4.44 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.01 6.52 -51.93 -0.34 0.67 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 31 H 0.07 1.10 6.11 -51.93 -0.32 0.78 16 32 H 0.00 -0.04 7.40 -51.93 -0.38 -0.43 16 33 H 0.04 0.88 5.40 -51.93 -0.28 0.60 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.14 2.57 7.32 -51.92 -0.38 2.19 16 36 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 37 H 0.14 1.35 7.88 -52.49 -0.41 0.94 16 38 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 41 H 0.07 0.48 7.64 -51.93 -0.40 0.08 16 42 H 0.15 1.49 7.88 -52.49 -0.41 1.08 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -29.54 357.76 -7.53 -37.06 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.45 Total: -0.11 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -4.02 Total: -9.12 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 1.16 Total: -47.16 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.65 Total: 15.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.54 -7.53 -37.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794622543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.272 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds