Wall clock time and date at job start Tue Mar 31 2020 12:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.46788 * 2 1 4 4 C 1.46893 * 110.99665 * 287.93157 * 3 2 1 5 5 C 1.50710 * 109.46861 * 160.37012 * 4 3 2 6 6 H 1.07995 * 119.99690 * 4.90013 * 5 4 3 7 7 C 1.37875 * 119.99959 * 184.90471 * 5 4 3 8 8 N 1.31509 * 120.00256 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00059 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47307 * 90.00003 * 9 7 5 11 11 H 1.48501 * 109.46917 * 209.99966 * 9 7 5 12 12 H 1.48505 * 109.46896 * 329.99617 * 9 7 5 13 13 C 1.46905 * 110.99547 * 163.98080 * 3 2 1 14 14 N 1.46500 * 109.47447 * 293.94941 * 13 3 2 15 15 N 1.28733 * 125.34214 * 270.00942 * 14 13 3 16 16 N 1.28988 * 108.94218 * 179.72300 * 15 14 13 17 17 C 1.34048 * 107.26878 * 0.42695 * 16 15 14 18 18 C 1.48452 * 126.67298 * 179.83257 * 17 16 15 19 19 C 1.39332 * 120.08782 * 179.66520 * 18 17 16 20 20 C 1.37962 * 119.90462 * 180.02562 * 19 18 17 21 21 C 1.38567 * 120.09390 * 359.97252 * 20 19 18 22 22 F 1.35095 * 119.90741 * 180.28040 * 21 20 19 23 23 C 1.38521 * 120.18311 * 0.02562 * 21 20 19 24 24 C 1.50697 * 119.95751 * 179.97438 * 23 21 20 25 25 C 1.38011 * 120.09373 * 0.02562 * 23 21 20 26 26 N 1.28872 * 125.34003 * 90.00054 * 14 13 3 27 27 H 1.08997 * 109.47353 * 299.26977 * 1 2 3 28 28 H 1.08995 * 109.47032 * 59.27531 * 1 2 3 29 29 H 1.09006 * 109.46460 * 179.27027 * 1 2 3 30 30 H 1.08997 * 109.47514 * 239.99598 * 2 1 3 31 31 H 1.09006 * 109.46885 * 119.99376 * 2 1 3 32 32 H 1.08996 * 109.47587 * 280.36686 * 4 3 2 33 33 H 1.08994 * 109.47279 * 40.36853 * 4 3 2 34 34 H 0.96996 * 120.00838 * 180.02562 * 8 7 5 35 35 H 1.09009 * 109.46681 * 173.95221 * 13 3 2 36 36 H 1.08995 * 109.47444 * 53.95429 * 13 3 2 37 37 H 1.07998 * 120.05010 * 0.02562 * 19 18 17 38 38 H 1.08005 * 119.95709 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47072 * 89.99835 * 24 23 21 40 40 H 1.08993 * 109.47747 * 209.99962 * 24 23 21 41 41 H 1.09006 * 109.47280 * 330.00318 * 24 23 21 42 42 H 1.07996 * 120.04729 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7969 2.0220 -1.3048 5 6 1.8482 3.5201 -1.1477 6 1 2.1062 3.9543 -0.1932 7 6 1.5656 4.3360 -2.2226 8 7 1.6098 5.6431 -2.0855 9 14 1.1184 3.5847 -3.8734 10 1 -0.3525 3.3944 -3.9486 11 1 1.5567 4.4913 -4.9648 12 1 1.7956 2.2711 -4.0191 13 6 3.4379 1.4420 0.3785 14 7 3.5886 1.0191 1.7730 15 7 3.5411 1.7983 2.7967 16 7 3.7056 1.0955 3.8657 17 6 3.8717 -0.1784 3.4829 18 6 4.0982 -1.3480 4.3686 19 6 4.2471 -2.6205 3.8209 20 6 4.4569 -3.7049 4.6476 21 6 4.5201 -3.5298 6.0207 22 9 4.7313 -4.5935 6.8263 23 6 4.3726 -2.2664 6.5693 24 6 4.4417 -2.0820 8.0633 25 6 4.1614 -1.1764 5.7495 26 7 3.7893 -0.1912 2.1674 27 1 -0.3634 0.5024 0.8964 28 1 -0.3633 0.5250 -0.8834 29 1 -0.3632 -1.0277 -0.0131 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.5718 1.7031 -2.0018 33 1 0.8197 1.7303 -1.6895 34 1 1.4106 6.2172 -2.8415 35 1 3.8030 2.4630 0.2669 36 1 4.0131 0.7780 -0.2667 37 1 4.1984 -2.7577 2.7508 38 1 4.5720 -4.6917 4.2240 39 1 5.4734 -1.8908 8.3584 40 1 3.8180 -1.2368 8.3543 41 1 4.0838 -2.9850 8.5579 42 1 4.0469 -0.1917 6.1779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794622543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:37 Heat of formation + Delta-G solvation = 99.727284 kcal Electronic energy + Delta-G solvation = -25854.377533 eV Core-core repulsion = 21979.762936 eV Total energy + Delta-G solvation = -3874.614596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.96656 -45.35890 -40.21571 -39.13451 -35.65247 -34.80358 -34.64048 -33.59922 -32.21487 -31.41136 -29.81466 -28.03387 -27.18514 -25.49412 -24.27323 -24.09155 -23.25763 -22.06629 -21.72042 -19.11285 -18.84978 -18.55735 -18.44212 -17.53782 -17.10164 -16.75444 -16.65697 -16.07235 -15.80105 -15.33162 -15.21287 -14.89703 -14.58933 -14.45531 -14.33639 -14.23148 -14.15019 -13.92835 -13.67883 -13.32388 -13.09508 -13.03190 -12.82522 -12.72829 -12.67202 -12.38055 -12.24304 -12.18019 -12.00452 -11.91340 -11.78368 -11.59855 -11.44539 -10.77040 -9.97900 -9.52378 -9.38668 -8.26779 -6.32498 -0.43107 0.16019 0.17961 0.84037 1.25552 1.39349 1.39583 1.49486 2.35274 2.56433 2.59643 2.84691 3.08619 3.13450 3.16968 3.64166 3.75517 3.83548 3.99594 4.10021 4.12634 4.21347 4.28794 4.33799 4.53396 4.55165 4.63357 4.68292 4.75866 4.77168 4.77826 4.88991 4.91442 4.98909 5.03574 5.11686 5.19071 5.21626 5.26002 5.33691 5.51333 5.77133 5.82428 5.96207 6.46909 6.75768 7.26024 7.31028 8.89611 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.002557 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.562363 B =10947.623977 C =11488.595090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.041 3.959 3 N -0.558 5.558 4 C 0.181 3.819 5 C -0.523 4.523 6 H 0.038 0.962 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.239 1.239 13 C 0.301 3.699 14 N -0.117 5.117 15 N -0.064 5.064 16 N -0.298 5.298 17 C 0.198 3.802 18 C -0.029 4.029 19 C -0.058 4.058 20 C -0.143 4.143 21 C 0.104 3.896 22 F -0.136 7.136 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.057 4.057 26 N -0.298 5.298 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.014 0.986 33 H 0.048 0.952 34 H 0.267 0.733 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.168 0.832 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 -22.142 12.080 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 N -0.285 5.285 4 C 0.055 3.945 5 C -0.561 4.561 6 H 0.056 0.944 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.162 1.162 13 C 0.093 3.907 14 N -0.031 5.031 15 N -0.057 5.057 16 N -0.169 5.169 17 C -0.081 4.081 18 C -0.033 4.033 19 C -0.079 4.079 20 C -0.161 4.161 21 C 0.084 3.916 22 F -0.114 7.114 23 C -0.121 4.121 24 C -0.171 4.171 25 C -0.077 4.077 26 N -0.149 5.149 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.168 0.832 38 H 0.185 0.815 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.617 -21.054 12.093 24.921 hybrid contribution 0.153 -0.290 -1.105 1.152 sum 5.770 -21.344 10.988 24.690 Atomic orbital electron populations 1.21729 0.94114 1.02239 1.01710 1.22300 0.97238 0.87641 1.01443 1.61665 1.14757 1.18271 1.33808 1.19979 0.97260 0.93047 0.84226 1.21222 1.47103 0.90581 0.97208 0.94388 1.25821 0.94805 0.94925 1.03043 1.70051 1.50654 1.04843 1.33006 0.85772 0.79384 0.79621 0.78505 1.19428 1.21215 1.16219 1.22756 0.92606 1.03490 0.71893 1.50410 1.40678 1.01330 1.10693 1.79040 1.14827 1.21821 0.90011 1.75993 1.18743 1.02541 1.19653 1.23961 1.02490 0.93496 0.88168 1.17402 1.05980 0.88619 0.91272 1.21125 0.95700 0.89634 1.01396 1.21266 1.02679 1.01290 0.90868 1.17839 1.01729 0.83368 0.88676 1.91492 1.92062 1.54721 1.73168 1.20032 1.02472 0.90990 0.98605 1.20816 1.03988 1.04036 0.88295 1.21007 0.96199 0.99608 0.90914 1.74734 1.21634 1.04980 1.13592 0.93989 0.92827 0.89807 0.92702 0.91152 0.96785 0.93447 0.92415 0.85845 0.86828 0.83152 0.81465 0.89576 0.89731 0.90529 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.99 71.98 0.72 -3.33 16 2 C 0.04 1.24 5.60 86.30 0.48 1.73 16 3 N -0.56 -20.88 4.52 -913.14 -4.13 -25.01 16 4 C 0.18 7.56 3.65 85.56 0.31 7.87 16 5 C -0.52 -27.93 9.17 25.60 0.23 -27.70 16 6 H 0.04 2.33 7.89 -2.91 -0.02 2.30 16 7 C 0.01 0.66 5.47 84.65 0.46 1.12 16 8 N -0.95 -56.95 13.96 21.45 0.30 -56.65 16 9 Si 0.94 40.50 27.37 68.60 1.88 42.37 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.24 -9.07 6.69 99.48 0.67 -8.41 16 13 C 0.30 10.19 6.12 170.80 1.05 11.23 16 14 N -0.12 -4.04 3.83 -195.97 -0.75 -4.79 16 15 N -0.06 -2.45 13.23 37.02 0.49 -1.96 16 16 N -0.30 -10.43 12.23 -52.19 -0.64 -11.06 16 17 C 0.20 5.97 7.93 137.38 1.09 7.06 16 18 C -0.03 -0.68 5.88 -20.04 -0.12 -0.80 16 19 C -0.06 -1.07 9.70 22.47 0.22 -0.86 16 20 C -0.14 -2.16 10.01 22.28 0.22 -1.93 16 21 C 0.10 1.76 7.24 22.42 0.16 1.92 16 22 F -0.14 -2.32 16.46 44.97 0.74 -1.58 16 23 C -0.12 -2.06 5.88 -19.85 -0.12 -2.17 16 24 C -0.11 -1.42 9.83 71.23 0.70 -0.72 16 25 C -0.06 -1.16 9.35 22.47 0.21 -0.95 16 26 N -0.30 -9.17 10.34 -52.14 -0.54 -9.71 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.63 6.52 -2.39 -0.02 1.61 16 29 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.05 1.45 8.05 -2.39 -0.02 1.43 16 31 H 0.07 2.11 6.11 -2.38 -0.01 2.10 16 32 H 0.01 0.56 7.40 -2.39 -0.02 0.54 16 33 H 0.05 1.94 5.40 -2.39 -0.01 1.93 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.12 4.62 7.32 -2.38 -0.02 4.60 16 36 H 0.11 3.10 8.12 -2.39 -0.02 3.08 16 37 H 0.15 2.49 7.88 -2.91 -0.02 2.47 16 38 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 41 H 0.08 0.87 7.64 -2.38 -0.02 0.86 16 42 H 0.14 2.92 7.88 -2.91 -0.02 2.90 16 Total: -1.00 -65.83 357.76 3.98 -61.85 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.00 Total: 14.07 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 5.63 Total: -7.53 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -5.27 Total: -109.17 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.74 Total: -1.58 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.88 Total: 42.37 kcal Total: -65.83 3.98 -61.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794622543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.573 kcal (2) G-P(sol) polarization free energy of solvation -65.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds