Wall clock time and date at job start Tue Mar 31 2020 12:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47477 * 2 1 4 4 N 1.46504 * 109.47246 * 120.00173 * 2 1 3 5 5 C 1.46499 * 119.99797 * 301.25217 * 4 2 1 6 6 C 1.50701 * 109.46694 * 269.99683 * 5 4 2 7 7 H 1.08001 * 120.00136 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00138 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99246 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00627 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46788 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47368 * 119.99682 * 10 8 6 13 13 H 1.48501 * 109.47003 * 240.00311 * 10 8 6 14 14 C 1.34777 * 119.99592 * 121.24779 * 4 2 1 15 15 O 1.21286 * 119.99273 * 185.63699 * 14 4 2 16 16 C 1.50695 * 120.00411 * 5.63397 * 14 4 2 17 17 H 1.08998 * 109.47179 * 51.05047 * 16 14 4 18 18 C 1.52999 * 109.47132 * 291.05076 * 16 14 4 19 19 O 1.42900 * 109.46796 * 171.04850 * 16 14 4 20 20 C 1.35662 * 116.99786 * 209.62656 * 19 16 14 21 21 C 1.39085 * 119.88555 * 357.77266 * 20 19 16 22 22 C 1.37123 * 120.11513 * 180.27945 * 21 20 19 23 23 C 1.40042 * 119.88146 * 359.49353 * 22 21 20 24 24 C 1.46859 * 120.11284 * 180.27634 * 23 22 21 25 25 O 1.21300 * 120.00042 * 0.02562 * 24 23 22 26 26 C 1.40033 * 119.77145 * 0.25625 * 23 22 21 27 27 C 1.37111 * 119.88709 * 359.97438 * 26 23 22 28 28 H 1.08998 * 109.46807 * 300.00000 * 1 2 3 29 29 H 1.09000 * 109.46963 * 59.99899 * 1 2 3 30 30 H 1.08993 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47152 * 240.00398 * 2 1 3 32 32 H 1.08995 * 109.47653 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47621 * 300.00566 * 3 2 1 34 34 H 1.09006 * 109.47056 * 59.99820 * 3 2 1 35 35 H 1.08992 * 109.47059 * 29.99188 * 5 4 2 36 36 H 1.09001 * 109.46964 * 149.99802 * 5 4 2 37 37 H 0.97006 * 119.99895 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.46855 * 174.24133 * 18 16 14 39 39 H 1.09008 * 109.46955 * 294.23484 * 18 16 14 40 40 H 1.08991 * 109.47460 * 54.23791 * 18 16 14 41 41 H 1.07997 * 119.94412 * 0.04607 * 21 20 19 42 42 H 1.07997 * 120.05901 * 179.77238 * 22 21 20 43 43 H 1.07994 * 120.00281 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.05789 * 180.02562 * 26 23 22 45 45 H 1.08001 * 119.94467 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6420 -0.2064 2.5266 6 6 2.6582 0.8005 3.0006 7 1 3.5004 1.0539 2.3738 8 6 2.5133 1.3973 4.2351 9 7 1.4880 1.0883 4.9985 10 14 3.7724 2.6458 4.8225 11 1 4.8213 2.8167 3.7851 12 1 3.1015 3.9477 5.0678 13 1 4.3960 2.1651 6.0816 14 6 2.8139 -1.7716 1.0725 15 8 3.1348 -2.4040 2.0565 16 6 3.3045 -2.1945 -0.2881 17 1 3.7485 -1.3386 -0.7964 18 6 2.1291 -2.7237 -1.1123 19 8 4.2855 -3.2233 -0.1421 20 6 5.2463 -3.2980 -1.0969 21 6 5.2166 -2.4257 -2.1798 22 6 6.1821 -2.5009 -3.1506 23 6 7.2053 -3.4512 -3.0448 24 6 8.2454 -3.5322 -4.0784 25 8 8.2194 -2.7749 -5.0256 26 6 7.2335 -4.3236 -1.9498 27 6 6.2606 -4.2433 -0.9870 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.6600 0.2641 2.4776 36 1 1.6090 -1.0447 3.2225 37 1 1.3858 1.5085 5.8669 38 1 2.4632 -2.9336 -2.1284 39 1 1.7499 -3.6392 -0.6581 40 1 1.3370 -1.9755 -1.1376 41 1 4.4295 -1.6903 -2.2582 42 1 6.1560 -1.8255 -3.9929 43 1 9.0333 -4.2659 -3.9953 44 1 8.0207 -5.0580 -1.8634 45 1 6.2817 -4.9154 -0.1419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795902694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:52 Heat of formation + Delta-G solvation = -72.267462 kcal Electronic energy + Delta-G solvation = -27110.850679 eV Core-core repulsion = 23287.652634 eV Total energy + Delta-G solvation = -3823.198045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81822 -39.64497 -38.79955 -37.16144 -36.05007 -33.10827 -32.18399 -31.32359 -30.96173 -30.32413 -27.38315 -26.90204 -25.16215 -24.23208 -23.37530 -22.39835 -21.28758 -20.90767 -18.79186 -18.49204 -17.00087 -16.75422 -16.50740 -16.06129 -15.65684 -15.55261 -14.94495 -14.68916 -14.46636 -14.42775 -14.00454 -13.85385 -13.68662 -13.48456 -13.26071 -12.93663 -12.75562 -12.47023 -12.36156 -12.24891 -11.98544 -11.71476 -11.59420 -11.24998 -11.18243 -11.04637 -10.90431 -10.86553 -10.62379 -10.41794 -10.06693 -10.02228 -9.60448 -9.37105 -9.00607 -8.47538 -8.39698 -7.78011 -6.09127 -4.13007 0.49017 1.13106 2.24841 2.75620 3.18441 3.26322 3.34880 3.38375 3.58815 3.86566 4.05555 4.40012 4.47761 4.50654 4.66197 4.77225 4.91196 4.98193 5.03196 5.08429 5.19171 5.25557 5.31195 5.40561 5.44559 5.46368 5.56843 5.75358 5.86845 5.93808 5.97257 6.06195 6.07607 6.12022 6.14102 6.26657 6.41681 6.50702 6.85928 6.96999 7.20778 7.21410 7.38713 7.46436 7.87381 8.17772 8.26959 8.80573 8.95815 9.51489 10.99056 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.003280 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.133195 B = 8535.220689 C = 9059.736615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 C -0.160 4.160 4 N -0.586 5.586 5 C 0.246 3.754 6 C -0.524 4.524 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.511 3.489 15 O -0.519 6.519 16 C 0.059 3.941 17 H 0.097 0.903 18 C -0.182 4.182 19 O -0.275 6.275 20 C 0.178 3.822 21 C -0.232 4.232 22 C -0.013 4.013 23 C -0.247 4.247 24 C 0.387 3.613 25 O -0.473 6.473 26 C -0.025 4.025 27 C -0.169 4.169 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.101 0.899 44 H 0.138 0.862 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -8.022 -17.382 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 C -0.218 4.218 4 N -0.320 5.320 5 C 0.128 3.872 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.295 3.705 15 O -0.394 6.394 16 C -0.001 4.001 17 H 0.115 0.885 18 C -0.240 4.240 19 O -0.185 6.185 20 C 0.130 3.870 21 C -0.251 4.251 22 C -0.031 4.031 23 C -0.248 4.248 24 C 0.248 3.752 25 O -0.347 6.347 26 C -0.044 4.044 27 C -0.187 4.187 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.118 0.882 44 H 0.156 0.844 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.792 -8.025 -16.969 19.373 hybrid contribution 0.549 0.921 0.464 1.168 sum 5.340 -7.104 -16.505 18.746 Atomic orbital electron populations 1.22177 0.95109 1.02014 1.02857 1.21288 0.94654 0.94410 0.87976 1.22175 1.01336 0.95600 1.02668 1.48252 1.47780 1.26905 1.09039 1.19315 0.95931 0.95272 0.76688 1.21466 1.09538 1.23047 1.02187 0.92286 1.24923 0.95700 0.97114 0.96332 1.69940 1.29152 1.43173 1.10973 0.86483 0.81432 0.80876 0.78895 1.19815 1.20956 1.20880 1.19706 0.80325 0.81615 0.88847 1.90712 1.56379 1.53257 1.39034 1.22519 0.89357 0.90699 0.97504 0.88519 1.22531 0.97742 1.03829 0.99855 1.86221 1.36317 1.50934 1.45067 1.19579 0.87740 0.92738 0.86958 1.21210 1.03717 1.03398 0.96750 1.21063 0.90816 0.94582 0.96684 1.20773 1.01287 1.02469 1.00260 1.23873 0.85546 0.83435 0.82386 1.90525 1.73737 1.39252 1.31191 1.21044 0.96367 0.95799 0.91151 1.20336 0.94895 1.01335 1.02156 0.90917 0.92015 0.92697 0.90315 0.92779 0.93022 0.89769 0.94385 0.93789 0.92752 0.91160 0.90473 0.89029 0.84583 0.84806 0.88246 0.84379 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.82 37.16 0.33 -1.85 16 2 C 0.12 1.81 2.35 -67.93 -0.16 1.65 16 3 C -0.16 -2.45 8.51 37.16 0.32 -2.13 16 4 N -0.59 -11.71 2.39 -167.47 -0.40 -12.11 16 5 C 0.25 6.13 4.67 -5.19 -0.02 6.11 16 6 C -0.52 -14.16 7.83 -34.44 -0.27 -14.43 16 7 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 10 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.51 10.48 7.06 -10.99 -0.08 10.40 16 15 O -0.52 -13.21 16.08 -14.20 -0.23 -13.44 16 16 C 0.06 0.89 1.78 -27.89 -0.05 0.84 16 17 H 0.10 1.29 5.28 -51.93 -0.27 1.01 16 18 C -0.18 -2.11 8.88 37.16 0.33 -1.78 16 19 O -0.27 -4.44 9.32 -38.44 -0.36 -4.79 16 20 C 0.18 2.35 6.67 -38.95 -0.26 2.09 16 21 C -0.23 -2.67 8.57 -39.67 -0.34 -3.01 16 22 C -0.01 -0.14 9.57 -39.31 -0.38 -0.52 16 23 C -0.25 -2.39 5.87 -105.06 -0.62 -3.00 16 24 C 0.39 3.36 11.44 34.22 0.39 3.75 16 25 O -0.47 -5.93 17.16 5.54 0.10 -5.83 16 26 C -0.03 -0.22 9.77 -39.32 -0.38 -0.60 16 27 C -0.17 -1.88 9.95 -39.68 -0.39 -2.28 16 28 H 0.07 1.13 6.62 -51.93 -0.34 0.79 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.70 7.82 -51.93 -0.41 0.29 16 31 H 0.08 0.94 4.11 -51.92 -0.21 0.73 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 35 H 0.04 0.95 6.36 -51.93 -0.33 0.62 16 36 H 0.04 1.27 7.35 -51.93 -0.38 0.88 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 0.65 7.63 -51.93 -0.40 0.26 16 39 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.09 0.96 4.76 -51.93 -0.25 0.72 16 41 H 0.14 1.38 5.63 -52.49 -0.30 1.08 16 42 H 0.13 1.35 7.64 -52.49 -0.40 0.95 16 43 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 45 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -34.50 369.07 -7.44 -41.94 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.14 Total: 0.55 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.68 Total: -3.16 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.34 Total: -37.25 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.49 Total: -24.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.50 -7.44 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795902694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.327 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds