Wall clock time and date at job start Tue Mar 31 2020 12:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47477 * 2 1 4 4 N 1.46504 * 109.47246 * 120.00173 * 2 1 3 5 5 C 1.46499 * 119.99797 * 301.25217 * 4 2 1 6 6 C 1.50701 * 109.46694 * 269.99683 * 5 4 2 7 7 H 1.08001 * 120.00136 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00138 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99246 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00627 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46788 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47368 * 119.99682 * 10 8 6 13 13 H 1.48501 * 109.47003 * 240.00311 * 10 8 6 14 14 C 1.34777 * 119.99592 * 121.24779 * 4 2 1 15 15 O 1.21286 * 119.99273 * 185.63699 * 14 4 2 16 16 C 1.50695 * 120.00411 * 5.63397 * 14 4 2 17 17 H 1.08998 * 109.47179 * 51.05047 * 16 14 4 18 18 C 1.52999 * 109.47132 * 291.05076 * 16 14 4 19 19 O 1.42900 * 109.46796 * 171.04850 * 16 14 4 20 20 C 1.35662 * 116.99786 * 209.62656 * 19 16 14 21 21 C 1.39085 * 119.88555 * 357.77266 * 20 19 16 22 22 C 1.37123 * 120.11513 * 180.27945 * 21 20 19 23 23 C 1.40042 * 119.88146 * 359.49353 * 22 21 20 24 24 C 1.46859 * 120.11284 * 180.27634 * 23 22 21 25 25 O 1.21300 * 120.00042 * 0.02562 * 24 23 22 26 26 C 1.40033 * 119.77145 * 0.25625 * 23 22 21 27 27 C 1.37111 * 119.88709 * 359.97438 * 26 23 22 28 28 H 1.08998 * 109.46807 * 300.00000 * 1 2 3 29 29 H 1.09000 * 109.46963 * 59.99899 * 1 2 3 30 30 H 1.08993 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47152 * 240.00398 * 2 1 3 32 32 H 1.08995 * 109.47653 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47621 * 300.00566 * 3 2 1 34 34 H 1.09006 * 109.47056 * 59.99820 * 3 2 1 35 35 H 1.08992 * 109.47059 * 29.99188 * 5 4 2 36 36 H 1.09001 * 109.46964 * 149.99802 * 5 4 2 37 37 H 0.97006 * 119.99895 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.46855 * 174.24133 * 18 16 14 39 39 H 1.09008 * 109.46955 * 294.23484 * 18 16 14 40 40 H 1.08991 * 109.47460 * 54.23791 * 18 16 14 41 41 H 1.07997 * 119.94412 * 0.04607 * 21 20 19 42 42 H 1.07997 * 120.05901 * 179.77238 * 22 21 20 43 43 H 1.07994 * 120.00281 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.05789 * 180.02562 * 26 23 22 45 45 H 1.08001 * 119.94467 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6420 -0.2064 2.5266 6 6 2.6582 0.8005 3.0006 7 1 3.5004 1.0539 2.3738 8 6 2.5133 1.3973 4.2351 9 7 1.4880 1.0883 4.9985 10 14 3.7724 2.6458 4.8225 11 1 4.8213 2.8167 3.7851 12 1 3.1015 3.9477 5.0678 13 1 4.3960 2.1651 6.0816 14 6 2.8139 -1.7716 1.0725 15 8 3.1348 -2.4040 2.0565 16 6 3.3045 -2.1945 -0.2881 17 1 3.7485 -1.3386 -0.7964 18 6 2.1291 -2.7237 -1.1123 19 8 4.2855 -3.2233 -0.1421 20 6 5.2463 -3.2980 -1.0969 21 6 5.2166 -2.4257 -2.1798 22 6 6.1821 -2.5009 -3.1506 23 6 7.2053 -3.4512 -3.0448 24 6 8.2454 -3.5322 -4.0784 25 8 8.2194 -2.7749 -5.0256 26 6 7.2335 -4.3236 -1.9498 27 6 6.2606 -4.2433 -0.9870 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.6600 0.2641 2.4776 36 1 1.6090 -1.0447 3.2225 37 1 1.3858 1.5085 5.8669 38 1 2.4632 -2.9336 -2.1284 39 1 1.7499 -3.6392 -0.6581 40 1 1.3370 -1.9755 -1.1376 41 1 4.4295 -1.6903 -2.2582 42 1 6.1560 -1.8255 -3.9929 43 1 9.0333 -4.2659 -3.9953 44 1 8.0207 -5.0580 -1.8634 45 1 6.2817 -4.9154 -0.1419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795902694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:51 Heat of formation + Delta-G solvation = -93.614023 kcal Electronic energy + Delta-G solvation = -27111.776336 eV Core-core repulsion = 23287.652634 eV Total energy + Delta-G solvation = -3824.123702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92797 -40.77985 -39.85321 -38.13531 -37.60637 -35.06931 -33.37857 -32.51424 -32.14527 -31.21960 -29.27247 -28.08603 -26.20963 -25.41184 -24.72649 -23.64013 -22.48204 -21.80521 -20.11319 -19.57930 -18.62951 -18.21799 -17.75941 -17.08040 -16.88983 -16.76803 -16.45164 -15.86096 -15.63042 -15.45038 -15.20254 -15.03526 -14.94055 -14.45015 -14.37576 -14.23798 -14.04378 -13.67624 -13.53226 -13.39694 -13.32200 -13.09777 -12.96188 -12.83723 -12.69250 -12.53120 -12.26721 -12.18133 -12.11088 -11.79931 -11.61996 -11.50259 -10.74374 -10.63837 -10.60899 -10.14068 -9.52711 -9.30977 -8.22706 -6.34628 -0.29502 0.34780 1.34032 1.36538 1.45270 1.49467 1.57609 1.68514 2.34753 2.53947 2.80991 3.07552 3.31682 3.43762 3.55763 3.73794 3.80311 3.88119 3.90553 4.20116 4.23572 4.28663 4.31071 4.45648 4.56051 4.59664 4.66488 4.79310 4.85640 4.96031 4.98273 5.01765 5.02737 5.11939 5.17622 5.20771 5.24751 5.34320 5.43506 5.54402 5.59483 5.65049 5.81842 6.06715 6.23586 6.56467 6.65269 6.74324 7.22509 7.38382 8.85111 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.003280 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.133195 B = 8535.220689 C = 9059.736615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.112 3.888 3 C -0.156 4.156 4 N -0.587 5.587 5 C 0.264 3.736 6 C -0.530 4.530 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.961 3.039 11 H -0.268 1.268 12 H -0.269 1.269 13 H -0.284 1.284 14 C 0.498 3.502 15 O -0.584 6.584 16 C 0.071 3.929 17 H 0.118 0.882 18 C -0.175 4.175 19 O -0.306 6.306 20 C 0.146 3.854 21 C -0.233 4.233 22 C -0.025 4.025 23 C -0.250 4.250 24 C 0.397 3.603 25 O -0.514 6.514 26 C -0.008 4.008 27 C -0.183 4.183 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.033 0.967 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.155 0.845 44 H 0.182 0.818 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 -7.919 -20.596 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 C -0.214 4.214 4 N -0.319 5.319 5 C 0.143 3.857 6 C -0.568 4.568 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.195 1.195 13 H -0.211 1.211 14 C 0.285 3.715 15 O -0.464 6.464 16 C 0.012 3.988 17 H 0.135 0.865 18 C -0.231 4.231 19 O -0.219 6.219 20 C 0.100 3.900 21 C -0.252 4.252 22 C -0.044 4.044 23 C -0.251 4.251 24 C 0.260 3.740 25 O -0.391 6.391 26 C -0.026 4.026 27 C -0.202 4.202 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.171 0.829 44 H 0.199 0.801 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.344 -7.908 -20.239 22.636 hybrid contribution 0.116 0.822 1.413 1.639 sum 6.460 -7.085 -18.825 21.127 Atomic orbital electron populations 1.22162 0.93608 1.02625 1.03335 1.21756 0.95920 0.94278 0.87038 1.22132 1.00644 0.95685 1.02934 1.48261 1.47642 1.27144 1.08895 1.18726 0.95490 0.92803 0.78698 1.21689 1.09586 1.23173 1.02391 0.92732 1.25784 0.97614 0.99128 0.96546 1.70056 1.30893 1.44462 1.11420 0.85464 0.79046 0.78824 0.78082 1.19197 1.19454 1.21058 1.20801 0.79281 0.80751 0.90677 1.90664 1.58626 1.55309 1.41810 1.22402 0.90789 0.91868 0.93753 0.86451 1.22533 0.96506 1.03527 1.00580 1.86173 1.37428 1.51294 1.46983 1.19903 0.88122 0.94595 0.87389 1.21293 1.04322 1.03252 0.96318 1.21257 0.91203 0.95244 0.96668 1.21155 1.01196 1.01914 1.00832 1.24542 0.85606 0.83190 0.80682 1.90530 1.74641 1.41158 1.32737 1.21435 0.96118 0.95673 0.89367 1.20619 0.95211 1.01243 1.03095 0.93940 0.87936 0.92087 0.86282 0.93821 0.88716 0.93453 0.94870 0.98898 0.92535 0.87996 0.91583 0.87672 0.83483 0.84429 0.82934 0.80057 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 8.82 71.98 0.63 -3.37 16 2 C 0.11 3.21 2.35 44.99 0.11 3.31 16 3 C -0.16 -4.58 8.51 71.98 0.61 -3.96 16 4 N -0.59 -24.23 2.39 -802.14 -1.91 -26.15 16 5 C 0.26 13.95 4.67 85.63 0.40 14.35 16 6 C -0.53 -29.87 7.83 25.60 0.20 -29.67 16 7 H 0.05 3.05 7.62 -2.91 -0.02 3.03 16 8 C 0.01 0.46 5.46 84.65 0.46 0.92 16 9 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 10 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 C 0.50 21.22 7.06 87.66 0.62 21.84 16 15 O -0.58 -31.86 16.08 15.84 0.25 -31.60 16 16 C 0.07 2.12 1.78 29.85 0.05 2.17 16 17 H 0.12 2.93 5.28 -2.39 -0.01 2.92 16 18 C -0.17 -3.69 8.88 71.98 0.64 -3.06 16 19 O -0.31 -10.03 9.32 -70.90 -0.66 -10.69 16 20 C 0.15 3.75 6.67 22.68 0.15 3.90 16 21 C -0.23 -4.96 8.57 22.21 0.19 -4.77 16 22 C -0.03 -0.50 9.57 22.45 0.21 -0.28 16 23 C -0.25 -4.07 5.87 -20.15 -0.12 -4.19 16 24 C 0.40 5.41 11.44 70.08 0.80 6.22 16 25 O -0.51 -11.65 17.16 -3.09 -0.05 -11.71 16 26 C -0.01 -0.11 9.77 22.44 0.22 0.10 16 27 C -0.18 -3.84 9.95 22.21 0.22 -3.62 16 28 H 0.04 1.33 6.62 -2.39 -0.02 1.31 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.45 7.82 -2.39 -0.02 1.43 16 31 H 0.12 2.47 4.11 -2.38 -0.01 2.46 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.74 6.92 -2.38 -0.02 1.73 16 35 H 0.03 1.77 6.36 -2.39 -0.02 1.75 16 36 H -0.01 -0.44 7.35 -2.39 -0.02 -0.46 16 37 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 38 H 0.10 1.55 7.63 -2.38 -0.02 1.54 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.10 1.89 4.76 -2.39 -0.01 1.88 16 41 H 0.15 2.61 5.63 -2.91 -0.02 2.60 16 42 H 0.14 2.53 7.64 -2.91 -0.02 2.51 16 43 H 0.15 0.53 8.06 -2.91 -0.02 0.50 16 44 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 45 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -82.82 369.07 6.35 -76.47 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.01 Total: 12.43 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.41 Total: -0.10 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.63 Total: -81.72 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.46 Total: -54.00 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -82.82 6.35 -76.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795902694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.139 kcal (2) G-P(sol) polarization free energy of solvation -82.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds