Wall clock time and date at job start Tue Mar 31 2020 12:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47030 * 2 1 4 4 O 1.45202 * 109.47240 * 120.00493 * 2 1 3 5 5 C 1.34231 * 116.99831 * 270.00172 * 4 2 1 6 6 O 1.20831 * 119.99831 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00004 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47253 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47121 * 306.01107 * 8 7 5 10 10 C 1.50703 * 109.46931 * 66.00717 * 8 7 5 11 11 H 1.07997 * 120.00141 * 35.64864 * 10 8 7 12 12 C 1.37877 * 119.99938 * 215.65273 * 10 8 7 13 13 N 1.31513 * 119.99999 * 180.46677 * 12 10 8 14 14 Si 1.86796 * 120.00068 * 0.46168 * 12 10 8 15 15 H 1.48504 * 109.47024 * 93.11219 * 14 12 10 16 16 H 1.48508 * 109.47333 * 213.10972 * 14 12 10 17 17 H 1.48500 * 109.47435 * 333.10876 * 14 12 10 18 18 C 1.50698 * 109.47208 * 186.00822 * 8 7 5 19 19 C 1.38239 * 119.99858 * 293.43335 * 18 8 7 20 20 C 1.38227 * 120.00123 * 179.78811 * 19 18 8 21 21 C 1.38236 * 119.99833 * 0.44386 * 20 19 18 22 22 C 1.38240 * 120.00031 * 359.81396 * 21 20 19 23 23 C 1.38229 * 119.99842 * 359.97255 * 22 21 20 24 24 C 1.50700 * 109.47238 * 240.00622 * 2 1 3 25 25 O 1.21286 * 119.99948 * 255.10725 * 24 2 1 26 26 N 1.34779 * 120.00182 * 75.10497 * 24 2 1 27 27 C 1.46501 * 119.99664 * 185.25724 * 26 24 2 28 28 C 1.46497 * 119.99729 * 5.25548 * 26 24 2 29 29 H 1.08998 * 109.47244 * 306.18351 * 1 2 3 30 30 H 1.09002 * 109.47129 * 66.18623 * 1 2 3 31 31 H 1.08997 * 109.46684 * 186.18210 * 1 2 3 32 32 H 1.09003 * 109.46872 * 59.99858 * 7 5 4 33 33 H 1.09000 * 109.46813 * 300.00343 * 7 5 4 34 34 H 0.97002 * 120.00355 * 179.97438 * 13 12 10 35 35 H 1.08004 * 119.99821 * 0.02562 * 19 18 8 36 36 H 1.07995 * 120.00734 * 180.27611 * 20 19 18 37 37 H 1.08006 * 120.00227 * 179.83623 * 21 20 19 38 38 H 1.07999 * 120.00196 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.00035 * 180.02562 * 23 22 21 40 40 H 1.09005 * 109.46927 * 90.00424 * 27 26 24 41 41 H 1.09004 * 109.46501 * 209.99396 * 27 26 24 42 42 H 1.08996 * 109.47644 * 329.99906 * 27 26 24 43 43 H 1.09004 * 109.47109 * 92.22508 * 28 26 24 44 44 H 1.08997 * 109.47051 * 212.21957 * 28 26 24 45 45 H 1.08999 * 109.47313 * 332.22124 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2171 0.0638 2.2811 6 8 1.9973 1.2516 2.2507 7 6 2.7183 -0.5774 3.5495 8 6 2.8636 0.4887 4.6371 9 1 3.4891 1.3015 4.2680 10 6 1.5028 1.0264 4.9983 11 1 0.6461 0.3690 5.0025 12 6 1.3518 2.3578 5.3235 13 7 0.1660 2.8250 5.6476 14 14 2.8314 3.4978 5.3037 15 1 2.9302 4.1575 3.9769 16 1 2.6749 4.5304 6.3595 17 1 4.0653 2.7119 5.5590 18 6 3.5024 -0.1225 5.8575 19 6 2.8254 -1.0845 6.5836 20 6 3.4131 -1.6483 7.7005 21 6 4.6741 -1.2435 8.0966 22 6 5.3490 -0.2776 7.3736 23 6 4.7630 0.2830 6.2542 24 6 2.0324 -0.7103 -1.2305 25 8 2.4890 -1.8302 -1.1403 26 7 1.9742 -0.1010 -2.4313 27 6 2.3545 -0.8319 -3.6427 28 6 1.5306 1.2921 -2.5251 29 1 -0.3634 0.6067 0.8294 30 1 -0.3633 0.4149 -0.9402 31 1 -0.3632 -1.0217 0.1107 32 1 3.6872 -1.0411 3.3639 33 1 2.0088 -1.3372 3.8773 34 1 0.0597 3.7616 5.8768 35 1 1.8388 -1.3983 6.2760 36 1 2.8862 -2.4030 8.2652 37 1 5.1323 -1.6820 8.9708 38 1 6.3340 0.0390 7.6833 39 1 5.2904 1.0373 5.6890 40 1 1.4777 -1.3299 -4.0569 41 1 2.7564 -0.1337 -4.3770 42 1 3.1120 -1.5756 -3.3957 43 1 2.3958 1.9531 -2.4743 44 1 1.0115 1.4452 -3.4712 45 1 0.8545 1.5145 -1.6996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795981539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:36 Heat of formation + Delta-G solvation = -109.564190 kcal Electronic energy + Delta-G solvation = -27088.440826 eV Core-core repulsion = 23263.625473 eV Total energy + Delta-G solvation = -3824.815353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90179 -40.75992 -39.97596 -37.64441 -36.73427 -35.90702 -33.83193 -33.20480 -31.60587 -30.59237 -28.92263 -28.12131 -27.52916 -25.32585 -24.22277 -23.31307 -22.20852 -20.89562 -20.55269 -19.08094 -18.93662 -18.20603 -17.67924 -17.32947 -17.15238 -16.72355 -16.52601 -16.14099 -15.70165 -15.44346 -15.06533 -14.90283 -14.65538 -14.25379 -14.20747 -13.97691 -13.93827 -13.67249 -13.63180 -13.45148 -13.33290 -13.23078 -12.96559 -12.86793 -12.71813 -12.65652 -12.12089 -11.93331 -11.86085 -11.82843 -11.54492 -11.33989 -11.06446 -10.88917 -10.64077 -9.82169 -9.61359 -9.32990 -8.22963 -6.22439 0.67998 0.71627 1.21105 1.34081 1.36654 1.37410 1.38694 1.43910 2.19082 2.40763 3.07098 3.22398 3.24184 3.70474 3.78991 3.90844 4.08987 4.15766 4.24697 4.30915 4.37390 4.37470 4.43831 4.45075 4.49423 4.56855 4.59065 4.70417 4.76740 4.84188 4.85023 4.89481 4.96524 5.02839 5.13681 5.32252 5.35816 5.39439 5.46399 5.63212 5.77072 5.81738 6.01544 6.07359 6.31663 6.35949 6.77234 6.86209 6.94629 7.42610 8.93357 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003728 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.891755 B = 7508.538174 C = 8507.914676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.062 3.938 3 H 0.107 0.893 4 O -0.349 6.349 5 C 0.464 3.536 6 O -0.507 6.507 7 C -0.087 4.087 8 C 0.056 3.944 9 H 0.041 0.959 10 C -0.476 4.476 11 H 0.038 0.962 12 C 0.030 3.970 13 N -0.948 5.948 14 Si 0.917 3.083 15 H -0.283 1.283 16 H -0.296 1.296 17 H -0.227 1.227 18 C -0.066 4.066 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.149 4.149 24 C 0.518 3.482 25 O -0.561 6.561 26 N -0.613 5.613 27 C 0.081 3.919 28 C 0.058 3.942 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.260 0.740 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -5.722 -13.111 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.003 3.997 3 H 0.125 0.875 4 O -0.267 6.267 5 C 0.307 3.693 6 O -0.394 6.394 7 C -0.125 4.125 8 C 0.037 3.963 9 H 0.059 0.941 10 C -0.514 4.514 11 H 0.056 0.944 12 C -0.167 4.167 13 N -0.589 5.589 14 Si 0.743 3.257 15 H -0.210 1.210 16 H -0.223 1.223 17 H -0.149 1.149 18 C -0.066 4.066 19 C -0.136 4.136 20 C -0.145 4.145 21 C -0.156 4.156 22 C -0.143 4.143 23 C -0.167 4.167 24 C 0.304 3.696 25 O -0.439 6.439 26 N -0.347 5.347 27 C -0.060 4.060 28 C -0.083 4.083 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.128 0.872 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.709 -5.782 -13.082 15.798 hybrid contribution -0.156 1.182 0.062 1.194 sum 6.553 -4.600 -13.020 15.285 Atomic orbital electron populations 1.22158 0.90503 1.04019 1.04960 1.22588 0.97323 0.97455 0.82302 0.87484 1.86642 1.77658 1.42363 1.19992 1.24210 0.74010 0.86035 0.85058 1.90666 1.47442 1.17793 1.83464 1.21464 1.03116 0.99744 0.88181 1.18088 0.95528 0.93293 0.89389 0.94054 1.20796 0.92259 0.94097 1.44242 0.94391 1.25581 0.97454 0.99562 0.94098 1.70019 1.24611 1.15062 1.49212 0.86196 0.83134 0.79390 0.76978 1.20973 1.22303 1.14939 1.20387 0.93310 0.94937 0.97981 1.21040 0.99261 0.97173 0.96151 1.21396 0.96142 1.00451 0.96491 1.21357 0.95188 0.98320 1.00732 1.21347 1.00695 0.97198 0.95029 1.21273 0.95374 1.01080 0.99013 1.20279 0.78297 0.86011 0.84963 1.90686 1.46107 1.20833 1.86287 1.47768 1.66044 1.14882 1.06030 1.21866 1.01250 0.97771 0.85109 1.22314 1.01245 0.79261 1.05501 0.91842 0.87023 0.91075 0.86968 0.87683 0.93106 0.87265 0.84392 0.83569 0.84076 0.86843 0.91232 0.87703 0.92276 0.91154 0.87169 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 9.14 71.98 0.66 -3.60 16 2 C 0.06 1.92 2.12 29.85 0.06 1.99 16 3 H 0.11 3.27 6.24 -2.39 -0.01 3.26 16 4 O -0.35 -13.32 9.46 -45.20 -0.43 -13.75 16 5 C 0.46 19.38 7.69 71.24 0.55 19.92 16 6 O -0.51 -24.27 14.24 21.95 0.31 -23.96 16 7 C -0.09 -3.42 5.08 29.85 0.15 -3.27 16 8 C 0.06 2.54 1.18 -12.29 -0.01 2.52 16 9 H 0.04 1.95 4.81 -2.39 -0.01 1.93 16 10 C -0.48 -26.30 6.87 25.60 0.18 -26.13 16 11 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 12 C 0.03 1.77 5.47 84.65 0.46 2.23 16 13 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 14 Si 0.92 45.87 27.11 68.60 1.86 47.73 16 15 H -0.28 -14.38 7.11 99.48 0.71 -13.68 16 16 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 17 H -0.23 -10.13 4.81 99.48 0.48 -9.65 16 18 C -0.07 -2.67 4.74 -19.87 -0.09 -2.77 16 19 C -0.12 -4.50 8.93 22.27 0.20 -4.30 16 20 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 21 C -0.14 -3.87 10.05 22.27 0.22 -3.64 16 22 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 23 C -0.15 -5.44 8.87 22.27 0.20 -5.24 16 24 C 0.52 15.21 6.96 87.66 0.61 15.82 16 25 O -0.56 -20.82 16.13 15.27 0.25 -20.58 16 26 N -0.61 -12.24 3.27 -871.88 -2.85 -15.10 16 27 C 0.08 1.21 10.49 127.77 1.34 2.55 16 28 C 0.06 0.75 9.87 127.77 1.26 2.01 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.11 2.10 6.38 -2.39 -0.02 2.08 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.11 3.94 8.05 -2.39 -0.02 3.93 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.11 4.31 7.88 -2.91 -0.02 4.28 16 36 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.11 4.01 7.07 -2.91 -0.02 3.99 16 40 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 41 H 0.10 0.86 8.07 -2.38 -0.02 0.84 16 42 H 0.06 1.15 7.36 -2.39 -0.02 1.13 16 43 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.11 0.71 8.09 -2.39 -0.02 0.69 16 45 H 0.08 1.09 4.69 -2.39 -0.01 1.07 16 Total: -1.00 -78.99 370.62 6.42 -72.57 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.76 Total: 21.96 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 6.23 Total: -9.17 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -2.56 Total: -74.80 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: 0.13 Total: -58.28 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.86 Total: 47.73 kcal Total: -78.99 6.42 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795981539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.998 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds