Wall clock time and date at job start Tue Mar 31 2020 12:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47553 * 2 1 4 4 C 1.46495 * 119.99797 * 270.00183 * 3 2 1 5 5 C 1.34776 * 119.99795 * 89.99482 * 3 2 1 6 6 O 1.21276 * 120.00176 * 0.02562 * 5 3 2 7 7 C 1.50701 * 119.99750 * 180.02562 * 5 3 2 8 8 O 1.45201 * 109.46787 * 180.02562 * 7 5 3 9 9 C 1.34234 * 116.99588 * 180.02562 * 8 7 5 10 10 O 1.20824 * 119.99958 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99948 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07996 * 119.99568 * 330.07534 * 14 12 11 16 16 C 1.37877 * 119.99831 * 150.08226 * 14 12 11 17 17 N 1.31508 * 120.00174 * 6.54999 * 16 14 12 18 18 Si 1.86806 * 119.99365 * 186.55534 * 16 14 12 19 19 H 1.48503 * 109.46588 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.46990 * 299.99410 * 18 16 14 21 21 H 1.48496 * 109.47189 * 59.99915 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38238 * 119.99714 * 64.29653 * 22 12 11 24 24 C 1.38234 * 119.99537 * 179.80946 * 23 22 12 25 25 C 1.38238 * 120.00115 * 0.39931 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86107 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.09007 * 109.46772 * 59.99771 * 1 2 3 29 29 H 1.08999 * 109.47579 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47090 * 300.00116 * 1 2 3 31 31 H 1.09002 * 109.47090 * 239.99884 * 2 1 3 32 32 H 1.09004 * 109.47277 * 120.00301 * 2 1 3 33 33 H 1.08999 * 109.47281 * 269.99145 * 4 3 2 34 34 H 1.08993 * 109.47483 * 29.99615 * 4 3 2 35 35 H 1.09004 * 109.47108 * 149.99863 * 4 3 2 36 36 H 1.08997 * 109.47251 * 59.99987 * 7 5 3 37 37 H 1.09002 * 109.47134 * 299.99997 * 7 5 3 38 38 H 1.08999 * 109.46642 * 59.99918 * 11 9 8 39 39 H 1.09002 * 109.46876 * 299.99811 * 11 9 8 40 40 H 0.96995 * 120.00004 * 354.73307 * 17 16 14 41 41 H 1.08000 * 120.00129 * 0.02562 * 23 22 12 42 42 H 1.08004 * 120.00058 * 180.23627 * 24 23 22 43 43 H 1.08006 * 119.99774 * 179.82823 * 25 24 23 44 44 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2430 2.0165 1.1672 6 8 2.0411 1.4447 2.2175 7 6 2.7449 3.4375 1.1672 8 8 2.9068 3.8936 2.5362 9 6 3.3496 5.1485 2.7120 10 8 3.5942 5.8427 1.7538 11 6 3.5416 5.6916 4.1047 12 6 4.0505 7.1322 4.0245 13 1 3.3763 7.7217 3.4033 14 6 5.4308 7.1445 3.4197 15 1 6.0886 6.2994 3.5584 16 6 5.8536 8.2348 2.6893 17 7 5.1061 9.3150 2.6276 18 14 7.4885 8.1775 1.7873 19 1 7.7099 9.4653 1.0817 20 1 8.5847 7.9525 2.7635 21 1 7.4701 7.0690 0.7993 22 6 4.1037 7.7239 5.4095 23 6 4.9650 7.1969 6.3536 24 6 5.0166 7.7422 7.6228 25 6 4.2010 8.8092 7.9504 26 6 3.3358 9.3327 7.0079 27 6 3.2871 8.7899 5.7375 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2920 1.9005 -1.5834 34 1 1.5818 1.6877 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 2.0267 4.0765 0.6535 37 1 3.7050 3.4837 0.6532 38 1 4.2692 5.0786 4.6365 39 1 2.5906 5.6709 4.6370 40 1 4.2242 9.3181 3.0314 41 1 5.6001 6.3614 6.0986 42 1 5.6923 7.3330 8.3594 43 1 4.2394 9.2334 8.9429 44 1 2.6984 10.1660 7.2640 45 1 2.6114 9.1992 5.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795988605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:59 Heat of formation + Delta-G solvation = -117.708168 kcal Electronic energy + Delta-G solvation = -26523.757753 eV Core-core repulsion = 22698.589251 eV Total energy + Delta-G solvation = -3825.168502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75444 -40.80846 -39.99467 -37.65003 -36.91403 -36.12489 -33.41898 -32.71370 -31.62009 -30.87240 -29.44095 -27.66278 -27.08644 -24.97730 -24.08654 -23.23510 -22.26058 -21.32779 -20.47378 -19.00907 -18.72993 -18.08034 -17.90025 -17.65624 -17.23371 -16.60587 -16.57977 -15.84896 -15.69128 -15.62686 -15.02055 -14.90508 -14.66066 -14.38317 -14.16608 -14.04245 -13.87266 -13.78915 -13.50786 -13.38531 -13.22703 -13.11670 -12.89600 -12.82131 -12.60813 -12.10880 -11.99530 -11.95197 -11.85624 -11.77225 -11.54883 -11.44942 -11.00926 -10.68265 -10.40871 -9.84613 -9.64815 -9.30732 -8.48064 -6.16076 0.67037 0.70663 1.24389 1.28970 1.34580 1.50971 1.59818 1.76205 2.19570 2.60504 3.08925 3.28152 3.35466 3.85448 3.93383 4.02431 4.08721 4.09822 4.21537 4.24033 4.24851 4.28022 4.35354 4.44005 4.49670 4.56058 4.63505 4.72437 4.78586 4.83131 4.87540 4.94536 4.96836 5.17950 5.24960 5.30184 5.37268 5.40236 5.48024 5.73986 5.80017 5.90564 6.10368 6.18960 6.27689 6.36463 6.73377 6.85702 6.93939 7.60238 8.92230 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.003285 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.198739 B = 8522.573236 C = 9938.215154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.609 5.609 4 C 0.063 3.937 5 C 0.516 3.484 6 O -0.563 6.563 7 C 0.043 3.957 8 O -0.354 6.354 9 C 0.466 3.534 10 O -0.507 6.507 11 C -0.086 4.086 12 C 0.073 3.927 13 H 0.018 0.982 14 C -0.571 4.571 15 H 0.042 0.958 16 C -0.018 4.018 17 N -0.936 5.936 18 Si 1.099 2.901 19 H -0.287 1.287 20 H -0.271 1.271 21 H -0.279 1.279 22 C -0.057 4.057 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.150 4.150 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.031 0.969 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.259 0.741 41 H 0.114 0.886 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.137 0.863 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 -14.313 -3.414 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.343 5.343 4 C -0.078 4.078 5 C 0.303 3.697 6 O -0.441 6.441 7 C -0.034 4.034 8 O -0.271 6.271 9 C 0.309 3.691 10 O -0.393 6.393 11 C -0.124 4.124 12 C 0.054 3.946 13 H 0.036 0.964 14 C -0.609 4.609 15 H 0.060 0.940 16 C -0.217 4.217 17 N -0.574 5.574 18 Si 0.924 3.076 19 H -0.213 1.213 20 H -0.196 1.196 21 H -0.205 1.205 22 C -0.058 4.058 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.161 4.161 26 C -0.143 4.143 27 C -0.168 4.168 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.155 0.845 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.879 -13.528 -4.120 15.315 hybrid contribution -1.088 -0.544 0.451 1.297 sum -6.967 -14.072 -3.669 16.125 Atomic orbital electron populations 1.22099 0.95072 1.03314 1.01659 1.21666 0.95069 0.80643 1.04079 1.47942 1.65296 1.15208 1.05902 1.22203 1.03531 0.97924 0.84173 1.20211 0.77709 0.87491 0.84275 1.90701 1.52766 1.68094 1.32548 1.22850 1.04297 0.93583 0.82619 1.86571 1.78138 1.31862 1.30567 1.24106 0.72604 0.78590 0.93756 1.90689 1.46017 1.59069 1.43516 1.21450 1.03579 0.98148 0.89233 1.17770 0.96784 0.90045 0.90023 0.96377 1.21829 0.99771 1.05152 1.34162 0.93965 1.26761 1.06792 0.92122 0.96074 1.70854 1.11253 1.28684 1.46562 0.83161 0.72479 0.75906 0.76103 1.21321 1.19649 1.20543 1.20513 0.94092 0.95610 0.95586 1.21036 0.98522 1.01069 0.93573 1.21408 0.99621 0.97041 0.96255 1.21328 0.97075 0.97436 1.00232 1.21312 0.99823 1.00130 0.93014 1.21140 1.00469 0.97976 0.97227 0.91132 0.89618 0.95010 0.86769 0.91704 0.90654 0.87679 0.90746 0.87087 0.87413 0.87717 0.87946 0.92981 0.86830 0.84018 0.83527 0.84542 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.24 71.98 0.74 -1.57 16 2 C 0.11 1.66 6.13 86.38 0.53 2.19 16 3 N -0.61 -11.75 2.87 -846.77 -2.43 -14.19 16 4 C 0.06 0.73 10.24 127.77 1.31 2.04 16 5 C 0.52 14.73 7.75 87.66 0.68 15.41 16 6 O -0.56 -20.77 16.08 15.78 0.25 -20.51 16 7 C 0.04 1.29 4.50 71.24 0.32 1.61 16 8 O -0.35 -13.46 9.76 -45.10 -0.44 -13.90 16 9 C 0.47 19.86 7.71 71.24 0.55 20.41 16 10 O -0.51 -24.80 14.77 21.97 0.32 -24.48 16 11 C -0.09 -3.57 5.05 29.85 0.15 -3.41 16 12 C 0.07 3.55 1.31 -12.29 -0.02 3.54 16 13 H 0.02 1.00 6.23 -2.39 -0.01 0.98 16 14 C -0.57 -31.19 6.41 25.60 0.16 -31.02 16 15 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 16 C -0.02 -1.04 5.45 84.66 0.46 -0.58 16 17 N -0.94 -57.65 13.63 21.45 0.29 -57.36 16 18 Si 1.10 51.99 29.91 68.60 2.05 54.04 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C -0.06 -2.57 4.77 -19.86 -0.09 -2.66 16 23 C -0.12 -4.97 8.88 22.27 0.20 -4.77 16 24 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 25 C -0.14 -4.44 10.05 22.27 0.22 -4.22 16 26 C -0.12 -4.31 10.05 22.27 0.22 -4.08 16 27 C -0.15 -6.27 9.67 22.27 0.22 -6.06 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 32 H 0.06 1.30 7.42 -2.38 -0.02 1.28 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 0.65 8.07 -2.39 -0.02 0.63 16 35 H 0.07 0.92 6.44 -2.38 -0.02 0.90 16 36 H 0.11 2.92 7.39 -2.39 -0.02 2.91 16 37 H 0.11 2.97 8.10 -2.39 -0.02 2.95 16 38 H 0.10 4.05 7.87 -2.39 -0.02 4.04 16 39 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 40 H 0.26 16.06 6.68 -92.71 -0.62 15.44 16 41 H 0.11 4.49 7.80 -2.91 -0.02 4.46 16 42 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 43 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 44 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 45 H 0.10 4.26 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -78.00 381.31 7.05 -70.95 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 1.12 Total: 22.57 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.87 Total: -17.13 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -2.14 Total: -71.54 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: 0.14 Total: -58.89 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -78.00 7.05 -70.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795988605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.755 kcal (2) G-P(sol) polarization free energy of solvation -77.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds