Wall clock time and date at job start Tue Mar 31 2020 12:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47162 * 2 1 4 4 C 1.34772 * 120.00427 * 180.02562 * 3 2 1 5 5 O 1.21554 * 119.99783 * 0.02562 * 4 3 2 6 6 C 1.47854 * 120.00446 * 180.02562 * 4 3 2 7 7 C 1.39609 * 120.11705 * 359.97438 * 6 4 3 8 8 C 1.37968 * 119.96524 * 180.02562 * 7 6 4 9 9 C 1.38278 * 120.20676 * 359.74245 * 8 7 6 10 10 C 1.38816 * 120.23769 * 0.51002 * 9 8 7 11 11 O 1.35933 * 119.98428 * 179.76761 * 10 9 8 12 12 C 1.34270 * 117.00039 * 248.73133 * 11 10 9 13 13 O 1.20828 * 119.99830 * 5.77192 * 12 11 10 14 14 C 1.50693 * 119.99994 * 185.77704 * 12 11 10 15 15 C 1.53007 * 109.47111 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47254 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47019 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47251 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99621 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00051 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99737 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00300 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47304 * 90.00017 * 22 20 18 24 24 H 1.48501 * 109.47382 * 210.00065 * 22 20 18 25 25 H 1.48501 * 109.46948 * 330.00322 * 22 20 18 26 26 C 1.38487 * 120.03033 * 359.49426 * 10 9 8 27 27 H 1.09004 * 109.46847 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46778 * 299.99627 * 1 2 3 29 29 H 1.08998 * 109.47011 * 60.00228 * 1 2 3 30 30 H 1.09006 * 109.47119 * 240.00507 * 2 1 3 31 31 H 1.08993 * 109.47128 * 120.00229 * 2 1 3 32 32 H 0.97000 * 119.99799 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.01411 * 359.97438 * 7 6 4 34 34 H 1.08004 * 119.89245 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.88173 * 180.26041 * 9 8 7 36 36 H 1.09001 * 109.47434 * 299.99675 * 14 12 11 37 37 H 1.08995 * 109.47363 * 59.99995 * 14 12 11 38 38 H 1.09001 * 109.46732 * 300.00136 * 15 14 12 39 39 H 1.08995 * 109.46986 * 59.99795 * 15 14 12 40 40 H 1.08997 * 109.46897 * 299.99779 * 16 15 14 41 41 H 1.08995 * 109.47275 * 59.99992 * 16 15 14 42 42 H 1.09002 * 109.47510 * 299.99760 * 17 16 15 43 43 H 1.08998 * 109.47575 * 59.99691 * 17 16 15 44 44 H 0.97006 * 119.99866 * 179.97438 * 21 20 18 45 45 H 1.08003 * 120.10146 * 180.22993 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1333 0.7037 -0.0015 6 6 3.8363 3.0216 0.0001 7 6 2.9312 4.0846 0.0006 8 6 3.3946 5.3841 0.0006 9 6 4.7538 5.6381 0.0054 10 6 5.6613 4.5876 -0.0004 11 8 6.9964 4.8432 -0.0003 12 6 7.6757 4.5369 -1.1173 13 8 7.0836 4.1548 -2.0988 14 6 9.1765 4.6695 -1.1466 15 6 9.6977 4.2605 -2.5258 16 6 11.2215 4.3957 -2.5558 17 6 11.7426 3.9873 -3.9351 18 6 13.2435 4.1198 -3.9645 19 1 13.7727 4.4617 -3.0873 20 6 13.9409 3.8058 -5.1117 21 7 15.2508 3.9210 -5.1371 22 14 13.0256 3.2153 -6.6291 23 1 12.6570 4.3823 -7.4703 24 1 13.8973 2.2994 -7.4080 25 1 11.7947 2.4947 -6.2156 26 6 5.2071 3.2793 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.3880 2.1185 0.0004 33 1 1.8689 3.8896 0.0002 34 1 2.6934 6.2056 0.0014 35 1 5.1107 6.6574 0.0097 36 1 9.4539 5.7042 -0.9452 37 1 9.6134 4.0217 -0.3867 38 1 9.4204 3.2257 -2.7267 39 1 9.2608 4.9079 -3.2860 40 1 11.4984 5.4306 -2.3550 41 1 11.6587 3.7485 -1.7956 42 1 11.4657 2.9524 -4.1364 43 1 11.3053 4.6347 -4.6951 44 1 15.7415 3.6997 -5.9441 45 1 5.9121 2.4612 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805871052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:18 Heat of formation + Delta-G solvation = -132.027924 kcal Electronic energy + Delta-G solvation = -25123.499215 eV Core-core repulsion = 21297.709761 eV Total energy + Delta-G solvation = -3825.789454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52637 -41.18834 -39.49159 -37.98557 -36.72842 -36.49448 -34.67760 -32.86183 -32.27386 -31.66725 -30.70133 -28.06020 -25.61237 -25.18121 -23.57833 -23.35198 -22.19645 -21.72254 -21.43654 -19.68384 -18.86416 -18.38089 -18.01828 -17.57943 -17.39117 -17.00658 -16.65732 -16.38787 -16.32774 -15.51609 -15.38267 -15.08173 -14.89975 -14.85896 -14.61361 -14.15371 -13.88101 -13.73135 -13.49184 -13.38134 -13.19405 -12.95423 -12.89032 -12.66745 -12.43694 -12.41729 -12.26055 -12.16931 -11.82916 -11.77731 -11.44174 -11.37624 -11.27013 -11.22111 -10.76491 -10.39744 -10.09933 -9.92156 -8.30132 -6.33265 -0.40827 -0.03897 0.98421 1.33770 1.35883 1.45574 1.48218 1.78007 2.02519 2.35129 2.67539 3.05272 3.46123 3.56195 3.69987 3.83687 3.93069 3.97854 4.04559 4.09910 4.18124 4.24208 4.36989 4.48062 4.56757 4.59586 4.69001 4.69735 4.79131 4.87821 5.02702 5.03201 5.04858 5.06297 5.15509 5.15987 5.19362 5.25189 5.30479 5.34930 5.57197 5.62877 5.66818 5.69366 6.28792 6.38152 6.65835 6.74904 7.04321 7.31488 8.86384 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.002063 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.037664 B =13569.422754 C =14641.227464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.107 3.893 3 N -0.706 5.706 4 C 0.553 3.447 5 O -0.586 6.586 6 C -0.138 4.138 7 C -0.071 4.071 8 C -0.098 4.098 9 C -0.092 4.092 10 C 0.052 3.948 11 O -0.292 6.292 12 C 0.461 3.539 13 O -0.523 6.523 14 C -0.102 4.102 15 C -0.103 4.103 16 C -0.094 4.094 17 C -0.018 4.018 18 C -0.531 4.531 19 H 0.038 0.962 20 C 0.004 3.996 21 N -0.950 5.950 22 Si 0.947 3.053 23 H -0.265 1.265 24 H -0.283 1.283 25 H -0.253 1.253 26 C -0.094 4.094 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.418 0.582 33 H 0.175 0.825 34 H 0.186 0.814 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.266 0.734 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.846 2.314 15.198 40.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 N -0.360 5.360 4 C 0.341 3.659 5 O -0.467 6.467 6 C -0.141 4.141 7 C -0.089 4.089 8 C -0.115 4.115 9 C -0.111 4.111 10 C 0.010 3.990 11 O -0.208 6.208 12 C 0.307 3.693 13 O -0.409 6.409 14 C -0.139 4.139 15 C -0.141 4.141 16 C -0.132 4.132 17 C -0.055 4.055 18 C -0.569 4.569 19 H 0.056 0.944 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.771 3.229 23 H -0.190 1.190 24 H -0.208 1.208 25 H -0.177 1.177 26 C -0.113 4.113 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.257 0.743 33 H 0.192 0.808 34 H 0.203 0.797 35 H 0.177 0.823 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.075 0.925 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -37.392 1.497 14.786 40.237 hybrid contribution 0.507 -0.417 -0.862 1.083 sum -36.885 1.081 13.924 39.440 Atomic orbital electron populations 1.21967 0.91114 1.04464 1.03695 1.21472 0.96747 0.81777 1.01590 1.45828 1.05684 1.10430 1.74040 1.18513 0.83216 0.88466 0.75751 1.90782 1.56923 1.47178 1.51809 1.19774 0.93353 0.93640 1.07332 1.21807 1.00677 0.91388 0.95054 1.21528 0.94405 0.97931 0.97644 1.21742 0.93491 0.99239 0.96607 1.18776 0.82076 0.93347 1.04752 1.84679 1.19309 1.76791 1.39987 1.24905 0.92431 0.72328 0.79657 1.90697 1.71317 1.42933 1.35994 1.21570 0.83714 1.07809 1.00784 1.21416 0.95589 1.01736 0.95318 1.21325 0.92957 1.01532 0.97342 1.19578 0.93929 0.96215 0.95779 1.21546 0.92574 1.44014 0.98789 0.94378 1.25990 0.95562 0.95344 1.02402 1.70064 1.08162 1.50996 1.29850 0.85700 0.79153 0.79084 0.78979 1.19035 1.20844 1.17710 1.21341 0.96345 0.96017 0.97636 0.89734 0.90527 0.90868 0.92780 0.92280 0.74279 0.80771 0.79701 0.82278 0.84465 0.85336 0.92698 0.91859 0.91736 0.92261 0.96864 0.96557 0.92530 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 10.03 71.98 0.72 0.13 16 2 C 0.11 1.28 6.39 86.38 0.55 1.83 16 3 N -0.71 -9.00 5.51 -465.96 -2.57 -11.57 16 4 C 0.55 12.53 7.77 86.79 0.67 13.21 16 5 O -0.59 -19.37 16.35 -3.89 -0.06 -19.43 16 6 C -0.14 -2.79 5.87 -20.10 -0.12 -2.91 16 7 C -0.07 -0.72 9.54 22.54 0.21 -0.51 16 8 C -0.10 -0.86 10.03 22.22 0.22 -0.64 16 9 C -0.09 -1.41 9.98 22.42 0.22 -1.19 16 10 C 0.05 1.22 5.27 22.47 0.12 1.33 16 11 O -0.29 -7.31 10.04 4.38 0.04 -7.27 16 12 C 0.46 12.83 7.73 71.23 0.55 13.38 16 13 O -0.52 -18.25 15.39 21.95 0.34 -17.91 16 14 C -0.10 -2.42 5.81 29.85 0.17 -2.24 16 15 C -0.10 -3.25 4.50 30.60 0.14 -3.11 16 16 C -0.09 -3.55 5.15 30.59 0.16 -3.39 16 17 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 18 C -0.53 -31.33 9.66 25.60 0.25 -31.09 16 19 H 0.04 2.43 7.99 -2.91 -0.02 2.40 16 20 C 0.00 0.22 5.47 84.65 0.46 0.69 16 21 N -0.95 -60.73 13.96 21.45 0.30 -60.44 16 22 Si 0.95 46.13 27.47 68.60 1.88 48.02 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 26 C -0.09 -2.47 8.87 22.63 0.20 -2.27 16 27 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.42 1.87 6.50 -92.71 -0.60 1.26 16 33 H 0.18 0.13 6.40 -2.91 -0.02 0.11 16 34 H 0.19 0.02 8.06 -2.91 -0.02 0.00 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.14 2.51 8.14 -2.39 -0.02 2.50 16 37 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 39 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 43 H 0.02 0.76 7.57 -2.39 -0.02 0.75 16 44 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 45 H 0.11 3.44 7.65 -2.91 -0.02 3.42 16 Total: -1.00 -85.66 382.79 4.93 -80.73 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.33 Total: 5.36 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 4.66 Total: -17.50 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -2.27 Total: -72.01 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: 0.32 Total: -44.61 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.02 kcal Total: -85.66 4.93 -80.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805871052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.294 kcal (2) G-P(sol) polarization free energy of solvation -85.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds