Wall clock time and date at job start Tue Mar 31 2020 12:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47867 * 2 1 4 4 C 1.34777 * 119.99786 * 86.36495 * 3 2 1 5 5 O 1.21293 * 119.99766 * 185.97973 * 4 3 2 6 6 C 1.50694 * 120.00417 * 5.98480 * 4 3 2 7 7 H 1.09005 * 109.46845 * 308.03191 * 6 4 3 8 8 C 1.53002 * 109.47092 * 68.02781 * 6 4 3 9 9 O 1.45194 * 109.47473 * 188.03382 * 6 4 3 10 10 C 1.34224 * 117.00297 * 149.99630 * 9 6 4 11 11 O 1.20823 * 120.00123 * 0.02562 * 10 9 6 12 12 C 1.50705 * 120.00106 * 180.02562 * 10 9 6 13 13 C 1.53001 * 109.47291 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47386 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99606 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00437 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00682 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99938 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47111 * 89.99913 * 18 16 14 20 20 H 1.48493 * 109.47301 * 210.00209 * 18 16 14 21 21 H 1.48503 * 109.46910 * 330.00430 * 18 16 14 22 22 C 1.39923 * 119.99774 * 266.37344 * 3 2 1 23 23 C 1.38870 * 120.07451 * 7.69895 * 22 3 2 24 24 C 1.38108 * 119.93078 * 179.76812 * 23 22 3 25 25 C 1.38279 * 120.06962 * 0.48107 * 24 23 22 26 26 C 1.38285 * 120.14191 * 359.76841 * 25 24 23 27 27 C 1.38111 * 120.06834 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.46878 * 300.00576 * 1 2 3 29 29 H 1.09001 * 109.46870 * 59.99965 * 1 2 3 30 30 H 1.08993 * 109.47765 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47377 * 119.99996 * 2 1 3 32 32 H 1.09002 * 109.47374 * 239.99483 * 2 1 3 33 33 H 1.08996 * 109.47281 * 305.95043 * 8 6 4 34 34 H 1.08996 * 109.46830 * 65.95816 * 8 6 4 35 35 H 1.09001 * 109.46511 * 185.95144 * 8 6 4 36 36 H 1.09005 * 109.47024 * 299.99737 * 12 10 9 37 37 H 1.08993 * 109.47598 * 59.99869 * 12 10 9 38 38 H 1.09002 * 109.47111 * 299.99798 * 13 12 10 39 39 H 1.09000 * 109.47440 * 59.99536 * 13 12 10 40 40 H 0.96999 * 120.00530 * 180.02562 * 17 16 14 41 41 H 1.08007 * 120.03099 * 359.97144 * 23 22 3 42 42 H 1.07999 * 119.96842 * 180.24867 * 24 23 22 43 43 H 1.08000 * 119.93141 * 179.74606 * 25 24 23 44 44 H 1.08004 * 119.96167 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.03087 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1734 2.0411 1.1649 5 8 2.4731 3.2164 1.1608 6 6 1.9744 1.3188 2.4724 7 1 1.0098 0.8113 2.4640 8 6 3.0906 0.2895 2.6614 9 8 2.0084 2.2756 3.5640 10 6 1.2778 1.9852 4.6519 11 8 0.6317 0.9650 4.6910 12 6 1.2635 2.9316 5.8246 13 6 0.3605 2.3682 6.9237 14 6 0.3466 3.3143 8.0966 15 1 0.9245 4.2260 8.0618 16 6 -0.4037 3.0160 9.2141 17 7 -0.4162 3.8418 10.2376 18 14 -1.4038 1.4393 9.2741 19 1 -0.5741 0.3482 9.8453 20 1 -2.6034 1.6461 10.1246 21 1 -1.8290 1.0703 7.8999 22 6 2.3240 2.0151 -1.2094 23 6 2.0161 1.3991 -2.4153 24 6 2.3146 2.0296 -3.6072 25 6 2.9286 3.2687 -3.6007 26 6 3.2412 3.8825 -2.4017 27 6 2.9404 3.2595 -1.2063 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1329 -0.3646 1.7906 34 1 4.0443 0.8046 2.7757 35 1 2.8895 -0.3048 3.5528 36 1 2.2763 3.0471 6.2107 37 1 0.8841 3.9018 5.5040 38 1 -0.6524 2.2524 6.5379 39 1 0.7402 1.3981 7.2443 40 1 -0.9438 3.6317 11.0240 41 1 1.5406 0.4293 -2.4209 42 1 2.0718 1.5529 -4.5453 43 1 3.1647 3.7579 -4.5342 44 1 3.7211 4.8501 -2.4001 45 1 3.1853 3.7393 -0.2702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:31 Heat of formation + Delta-G solvation = -78.152612 kcal Electronic energy + Delta-G solvation = -26627.720686 eV Core-core repulsion = 22804.267442 eV Total energy + Delta-G solvation = -3823.453245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51151 -40.19448 -38.61083 -36.64727 -36.42953 -33.67878 -32.69214 -31.65876 -31.32344 -30.91566 -29.39810 -26.69000 -25.35937 -24.14075 -23.24287 -22.29453 -21.51620 -20.00861 -19.88798 -18.13087 -17.70563 -17.19035 -16.90309 -16.50849 -16.19484 -15.93734 -15.43930 -14.88914 -14.61833 -14.31982 -14.21561 -14.10531 -13.79536 -13.58750 -13.33578 -13.13868 -12.93305 -12.80566 -12.65189 -12.55357 -12.34810 -12.06559 -11.75769 -11.51043 -11.35357 -11.30955 -11.05601 -10.82600 -10.60542 -10.37285 -10.21483 -10.02639 -9.77007 -9.53842 -9.28134 -9.16282 -8.57627 -8.22389 -6.08603 -4.08790 1.00264 1.18599 2.02028 2.19460 2.55558 2.99154 3.31964 3.39171 3.47264 3.61364 3.84542 4.28290 4.44002 4.52804 4.54347 4.62215 4.70528 4.71618 4.80523 4.92458 5.00316 5.10030 5.15627 5.22551 5.25717 5.33355 5.38712 5.39354 5.46322 5.71712 5.76995 5.81825 5.93206 5.96447 5.99825 6.15191 6.26314 6.36487 6.38711 6.65358 6.82223 6.90472 7.19384 7.27212 7.66126 7.68177 8.06352 8.45062 8.93931 9.52656 11.03963 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.002526 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.059167 B =11082.159165 C =11630.272568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 N -0.549 5.549 4 C 0.520 3.480 5 O -0.486 6.486 6 C 0.067 3.933 7 H 0.112 0.888 8 C -0.173 4.173 9 O -0.333 6.333 10 C 0.460 3.540 11 O -0.509 6.509 12 C -0.094 4.094 13 C -0.001 4.001 14 C -0.527 4.527 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.262 1.262 22 C 0.156 3.844 23 C -0.161 4.161 24 C -0.098 4.098 25 C -0.148 4.148 26 C -0.096 4.096 27 C -0.162 4.162 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 -8.928 -28.540 30.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.043 4.043 3 N -0.274 5.274 4 C 0.309 3.691 5 O -0.359 6.359 6 C 0.008 3.992 7 H 0.129 0.871 8 C -0.230 4.230 9 O -0.250 6.250 10 C 0.304 3.696 11 O -0.396 6.396 12 C -0.132 4.132 13 C -0.039 4.039 14 C -0.565 4.565 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.186 1.186 22 C 0.063 3.937 23 C -0.182 4.182 24 C -0.116 4.116 25 C -0.167 4.167 26 C -0.114 4.114 27 C -0.181 4.181 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.143 0.857 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.771 -8.620 -28.255 30.307 hybrid contribution -0.717 -1.031 -0.018 1.256 sum 6.055 -9.650 -28.274 30.483 Atomic orbital electron populations 1.22258 0.94530 1.03369 1.03376 1.22176 0.95782 0.81144 1.05149 1.45475 1.62868 1.14637 1.04399 1.20483 0.76972 0.86997 0.84648 1.90481 1.44114 1.15302 1.86036 1.22312 1.02892 0.89771 0.84198 0.87069 1.22334 0.98421 0.98076 1.04149 1.86736 1.65288 1.48258 1.24745 1.24968 0.74551 0.86959 0.83124 1.90604 1.41235 1.27186 1.80607 1.21589 1.04557 0.97371 0.89655 1.19490 0.94737 0.96960 0.92670 1.21021 1.29694 1.07281 0.98529 0.90580 1.24957 0.96132 0.96707 0.95325 1.69901 1.41271 1.36727 1.05880 0.86801 0.80084 0.83953 0.78720 1.20164 1.21310 1.18633 1.17973 0.97616 0.93612 0.84527 1.20814 1.05078 1.01273 0.91024 1.20889 0.98335 0.95241 0.97174 1.21151 1.01347 0.96070 0.98156 1.21184 0.98591 0.99686 0.91980 1.22467 0.99318 0.94679 1.01666 0.91831 0.91638 0.90360 0.88369 0.88750 0.89965 0.90367 0.89818 0.88039 0.88010 0.95597 0.96003 0.92575 0.85669 0.85873 0.86232 0.85747 0.80931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 10.13 37.16 0.38 -0.83 16 2 C 0.08 0.54 4.96 -4.04 -0.02 0.52 16 3 N -0.55 -5.68 2.70 -113.46 -0.31 -5.98 16 4 C 0.52 6.85 6.92 -10.99 -0.08 6.78 16 5 O -0.49 -7.89 13.04 -13.98 -0.18 -8.07 16 6 C 0.07 0.87 2.16 -27.88 -0.06 0.81 16 7 H 0.11 1.39 5.63 -51.93 -0.29 1.10 16 8 C -0.17 -1.72 9.15 37.16 0.34 -1.38 16 9 O -0.33 -5.49 9.43 -45.85 -0.43 -5.93 16 10 C 0.46 8.43 7.93 36.01 0.29 8.72 16 11 O -0.51 -10.16 15.20 -18.75 -0.28 -10.44 16 12 C -0.09 -1.84 5.75 -27.88 -0.16 -2.00 16 13 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 14 C -0.53 -14.81 9.66 -34.44 -0.33 -15.14 16 15 H 0.08 2.24 7.99 -52.48 -0.42 1.83 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 18 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 22 C 0.16 1.71 6.48 -83.70 -0.54 1.16 16 23 C -0.16 -1.39 9.15 -39.39 -0.36 -1.75 16 24 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 25 C -0.15 -1.25 10.04 -39.55 -0.40 -1.65 16 26 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 27 C -0.16 -1.95 8.97 -39.39 -0.35 -2.30 16 28 H 0.06 0.55 7.13 -51.93 -0.37 0.18 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.57 4.32 -51.93 -0.22 0.35 16 32 H 0.09 0.45 6.35 -51.93 -0.33 0.12 16 33 H 0.08 0.57 5.49 -51.93 -0.29 0.29 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 37 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 38 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 39 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.13 0.78 6.30 -52.48 -0.33 0.45 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.17 2.42 4.74 -55.08 -0.26 2.16 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -34.13 366.70 -8.11 -42.24 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.25 Total: -0.11 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.29 Total: -7.75 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.47 Total: -32.72 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.90 Total: -24.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.13 -8.11 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.910 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds