Wall clock time and date at job start Tue Mar 31 2020 12:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47867 * 2 1 4 4 C 1.34777 * 119.99786 * 86.36495 * 3 2 1 5 5 O 1.21293 * 119.99766 * 185.97973 * 4 3 2 6 6 C 1.50694 * 120.00417 * 5.98480 * 4 3 2 7 7 H 1.09005 * 109.46845 * 308.03191 * 6 4 3 8 8 C 1.53002 * 109.47092 * 68.02781 * 6 4 3 9 9 O 1.45194 * 109.47473 * 188.03382 * 6 4 3 10 10 C 1.34224 * 117.00297 * 149.99630 * 9 6 4 11 11 O 1.20823 * 120.00123 * 0.02562 * 10 9 6 12 12 C 1.50705 * 120.00106 * 180.02562 * 10 9 6 13 13 C 1.53001 * 109.47291 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47386 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99606 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00437 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00682 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99938 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47111 * 89.99913 * 18 16 14 20 20 H 1.48493 * 109.47301 * 210.00209 * 18 16 14 21 21 H 1.48503 * 109.46910 * 330.00430 * 18 16 14 22 22 C 1.39923 * 119.99774 * 266.37344 * 3 2 1 23 23 C 1.38870 * 120.07451 * 7.69895 * 22 3 2 24 24 C 1.38108 * 119.93078 * 179.76812 * 23 22 3 25 25 C 1.38279 * 120.06962 * 0.48107 * 24 23 22 26 26 C 1.38285 * 120.14191 * 359.76841 * 25 24 23 27 27 C 1.38111 * 120.06834 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.46878 * 300.00576 * 1 2 3 29 29 H 1.09001 * 109.46870 * 59.99965 * 1 2 3 30 30 H 1.08993 * 109.47765 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47377 * 119.99996 * 2 1 3 32 32 H 1.09002 * 109.47374 * 239.99483 * 2 1 3 33 33 H 1.08996 * 109.47281 * 305.95043 * 8 6 4 34 34 H 1.08996 * 109.46830 * 65.95816 * 8 6 4 35 35 H 1.09001 * 109.46511 * 185.95144 * 8 6 4 36 36 H 1.09005 * 109.47024 * 299.99737 * 12 10 9 37 37 H 1.08993 * 109.47598 * 59.99869 * 12 10 9 38 38 H 1.09002 * 109.47111 * 299.99798 * 13 12 10 39 39 H 1.09000 * 109.47440 * 59.99536 * 13 12 10 40 40 H 0.96999 * 120.00530 * 180.02562 * 17 16 14 41 41 H 1.08007 * 120.03099 * 359.97144 * 23 22 3 42 42 H 1.07999 * 119.96842 * 180.24867 * 24 23 22 43 43 H 1.08000 * 119.93141 * 179.74606 * 25 24 23 44 44 H 1.08004 * 119.96167 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.03087 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1734 2.0411 1.1649 5 8 2.4731 3.2164 1.1608 6 6 1.9744 1.3188 2.4724 7 1 1.0098 0.8113 2.4640 8 6 3.0906 0.2895 2.6614 9 8 2.0084 2.2756 3.5640 10 6 1.2778 1.9852 4.6519 11 8 0.6317 0.9650 4.6910 12 6 1.2635 2.9316 5.8246 13 6 0.3605 2.3682 6.9237 14 6 0.3466 3.3143 8.0966 15 1 0.9245 4.2260 8.0618 16 6 -0.4037 3.0160 9.2141 17 7 -0.4162 3.8418 10.2376 18 14 -1.4038 1.4393 9.2741 19 1 -0.5741 0.3482 9.8453 20 1 -2.6034 1.6461 10.1246 21 1 -1.8290 1.0703 7.8999 22 6 2.3240 2.0151 -1.2094 23 6 2.0161 1.3991 -2.4153 24 6 2.3146 2.0296 -3.6072 25 6 2.9286 3.2687 -3.6007 26 6 3.2412 3.8825 -2.4017 27 6 2.9404 3.2595 -1.2063 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1329 -0.3646 1.7906 34 1 4.0443 0.8046 2.7757 35 1 2.8895 -0.3048 3.5528 36 1 2.2763 3.0471 6.2107 37 1 0.8841 3.9018 5.5040 38 1 -0.6524 2.2524 6.5379 39 1 0.7402 1.3981 7.2443 40 1 -0.9438 3.6317 11.0240 41 1 1.5406 0.4293 -2.4209 42 1 2.0718 1.5529 -4.5453 43 1 3.1647 3.7579 -4.5342 44 1 3.7211 4.8501 -2.4001 45 1 3.1853 3.7393 -0.2702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:30 Heat of formation + Delta-G solvation = -96.969173 kcal Electronic energy + Delta-G solvation = -26628.536634 eV Core-core repulsion = 22804.267442 eV Total energy + Delta-G solvation = -3824.269192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.46492 -41.45987 -39.46915 -37.77392 -37.45961 -35.65661 -33.80440 -33.21322 -32.28825 -31.60562 -30.14297 -28.51092 -26.33185 -24.86136 -24.26354 -23.45056 -22.59168 -21.48669 -20.87045 -19.53905 -18.80731 -18.36669 -18.17532 -17.63496 -17.49008 -16.75322 -16.61461 -16.25068 -15.78913 -15.37399 -15.27550 -15.17181 -14.82280 -14.64550 -14.53828 -14.23285 -14.12633 -13.78919 -13.69845 -13.48851 -13.40205 -13.08832 -12.96027 -12.81415 -12.54044 -12.29006 -12.06096 -12.00700 -11.99592 -11.93685 -11.80539 -11.54049 -11.43081 -11.34111 -10.79178 -10.50065 -9.86979 -8.97972 -8.31798 -6.36949 0.23881 0.47541 0.98737 1.13001 1.29363 1.35360 1.37325 1.50821 1.91866 2.34788 2.90294 2.95319 3.03312 3.56425 3.67269 3.71830 3.79796 3.97692 4.09599 4.11996 4.22629 4.27865 4.34047 4.34397 4.38950 4.48292 4.53096 4.57236 4.60314 4.76967 4.82215 4.84056 4.99706 5.13104 5.15209 5.22252 5.24913 5.29220 5.34291 5.47066 5.55947 5.56986 5.65835 6.04562 6.15958 6.20566 6.60744 6.71581 6.76391 7.28089 8.83900 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.002526 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.059167 B =11082.159165 C =11630.272568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 N -0.541 5.541 4 C 0.516 3.484 5 O -0.529 6.529 6 C 0.061 3.939 7 H 0.118 0.882 8 C -0.167 4.167 9 O -0.342 6.342 10 C 0.472 3.528 11 O -0.526 6.526 12 C -0.093 4.093 13 C 0.005 3.995 14 C -0.534 4.534 15 H 0.047 0.953 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.943 3.057 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.255 1.255 22 C 0.135 3.865 23 C -0.155 4.155 24 C -0.096 4.096 25 C -0.148 4.148 26 C -0.109 4.109 27 C -0.192 4.192 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.019 0.981 39 H 0.022 0.978 40 H 0.268 0.732 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.131 0.869 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -11.869 -31.512 34.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.048 4.048 3 N -0.264 5.264 4 C 0.305 3.695 5 O -0.406 6.406 6 C 0.003 3.997 7 H 0.136 0.864 8 C -0.224 4.224 9 O -0.258 6.258 10 C 0.317 3.683 11 O -0.415 6.415 12 C -0.130 4.130 13 C -0.033 4.033 14 C -0.572 4.572 15 H 0.066 0.934 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.767 3.233 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.179 1.179 22 C 0.041 3.959 23 C -0.176 4.176 24 C -0.114 4.114 25 C -0.167 4.167 26 C -0.127 4.127 27 C -0.212 4.212 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.162 0.838 44 H 0.149 0.851 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.484 -11.585 -31.272 33.973 hybrid contribution -0.565 -0.047 0.750 0.940 sum 5.919 -11.632 -30.521 33.195 Atomic orbital electron populations 1.22255 0.94441 1.04532 1.02086 1.22514 0.95824 0.79367 1.07144 1.45518 1.61816 1.15661 1.03408 1.20586 0.76806 0.86630 0.85515 1.90497 1.46353 1.17012 1.86709 1.22683 1.04478 0.89563 0.82947 0.86439 1.22366 0.96886 0.97505 1.05670 1.86669 1.64466 1.49575 1.25092 1.24391 0.74433 0.86169 0.83326 1.90589 1.42041 1.27735 1.81127 1.21369 1.04393 0.97746 0.89506 1.19315 0.95363 0.96060 0.92517 1.21333 1.28820 1.07021 1.00051 0.93443 1.25862 0.97493 1.00235 0.94991 1.70031 1.42660 1.38916 1.06767 0.85759 0.78675 0.79800 0.79089 1.18972 1.20601 1.17872 1.18185 0.98540 0.93715 0.85450 1.21144 1.04144 1.02155 0.90109 1.21342 0.96958 0.94847 0.98273 1.21493 1.00444 0.96397 0.98328 1.21354 0.99014 1.00243 0.92122 1.22358 1.01409 0.96036 1.01405 0.94229 0.91826 0.87928 0.87314 0.85792 0.86563 0.90726 0.89983 0.86756 0.87425 0.96240 0.95922 0.92277 0.82883 0.82610 0.83791 0.85072 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 10.13 71.98 0.73 -1.24 16 2 C 0.07 0.76 4.96 86.38 0.43 1.19 16 3 N -0.54 -10.59 2.70 -631.26 -1.71 -12.30 16 4 C 0.52 13.71 6.92 87.66 0.61 14.32 16 5 O -0.53 -18.16 13.04 15.60 0.20 -17.95 16 6 C 0.06 1.56 2.16 29.85 0.06 1.62 16 7 H 0.12 2.84 5.63 -2.38 -0.01 2.83 16 8 C -0.17 -3.07 9.15 71.98 0.66 -2.41 16 9 O -0.34 -11.30 9.43 -45.04 -0.42 -11.72 16 10 C 0.47 17.15 7.93 71.24 0.56 17.72 16 11 O -0.53 -20.52 15.20 21.97 0.33 -20.18 16 12 C -0.09 -3.63 5.75 29.85 0.17 -3.46 16 13 C 0.01 0.24 3.33 29.85 0.10 0.34 16 14 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 15 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 16 C 0.01 0.70 5.47 84.65 0.46 1.17 16 17 N -0.94 -58.80 13.96 21.44 0.30 -58.51 16 18 Si 0.94 45.09 27.47 68.60 1.88 46.98 16 19 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 22 C 0.13 2.80 6.48 38.15 0.25 3.05 16 23 C -0.16 -2.20 9.15 22.39 0.20 -2.00 16 24 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16 25 C -0.15 -2.15 10.04 22.29 0.22 -1.93 16 26 C -0.11 -2.13 10.04 22.25 0.22 -1.91 16 27 C -0.19 -4.78 8.97 22.39 0.20 -4.58 16 28 H 0.04 0.64 7.13 -2.39 -0.02 0.62 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.11 0.92 4.32 -2.39 -0.01 0.91 16 32 H 0.12 0.62 6.35 -2.39 -0.02 0.61 16 33 H 0.12 1.29 5.49 -2.39 -0.01 1.27 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 4.15 8.14 -2.38 -0.02 4.13 16 37 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 38 H 0.02 0.95 7.15 -2.39 -0.02 0.93 16 39 H 0.02 1.08 7.53 -2.39 -0.02 1.06 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.15 1.22 6.30 -2.91 -0.02 1.20 16 42 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 43 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.15 4.45 4.74 -43.88 -0.21 4.24 16 Total: -1.00 -76.39 366.70 6.70 -69.69 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.75 Total: 13.39 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.36 Total: -9.39 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -1.41 Total: -70.80 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: 0.11 Total: -49.86 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -76.39 6.70 -69.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.283 kcal (2) G-P(sol) polarization free energy of solvation -76.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds