Wall clock time and date at job start Tue Mar 31 2020 12:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46502 * 109.46681 * 2 1 4 4 C 1.34779 * 119.99554 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99997 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47231 * 180.02562 * 6 4 3 8 8 O 1.45203 * 109.46980 * 180.02562 * 7 6 4 9 9 C 1.34236 * 117.00110 * 180.02562 * 8 7 6 10 10 O 1.20825 * 119.99323 * 359.97438 * 9 8 7 11 11 C 1.50688 * 120.00296 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47354 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47305 * 53.80117 * 12 11 9 14 14 C 1.50708 * 109.46885 * 293.80185 * 12 11 9 15 15 H 1.08000 * 119.99624 * 324.79477 * 14 12 11 16 16 C 1.37875 * 120.00085 * 144.79205 * 14 12 11 17 17 N 1.31509 * 120.00148 * 181.40791 * 16 14 12 18 18 Si 1.86808 * 119.99819 * 1.40439 * 16 14 12 19 19 H 1.48496 * 109.47120 * 267.09715 * 18 16 14 20 20 H 1.48495 * 109.46920 * 27.09863 * 18 16 14 21 21 H 1.48502 * 109.46719 * 147.09838 * 18 16 14 22 22 C 1.50699 * 109.47482 * 173.80503 * 12 11 9 23 23 C 1.38240 * 119.99980 * 66.64160 * 22 12 11 24 24 C 1.38238 * 119.99579 * 179.81083 * 23 22 12 25 25 C 1.38232 * 120.00406 * 0.39891 * 24 23 22 26 26 C 1.38237 * 119.99864 * 359.85742 * 25 24 23 27 27 C 1.38230 * 119.99847 * 246.91995 * 22 12 11 28 28 H 1.08996 * 109.46472 * 299.99353 * 1 2 3 29 29 H 1.08997 * 109.46931 * 59.99461 * 1 2 3 30 30 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46472 * 240.00647 * 2 1 3 32 32 H 1.08997 * 109.47406 * 120.00303 * 2 1 3 33 33 H 0.96999 * 120.00137 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47030 * 59.99963 * 6 4 3 35 35 H 1.09004 * 109.47207 * 300.00496 * 6 4 3 36 36 H 1.08993 * 109.47566 * 59.99624 * 7 6 4 37 37 H 1.09005 * 109.46821 * 299.99469 * 7 6 4 38 38 H 1.08995 * 109.47706 * 59.99179 * 11 9 8 39 39 H 1.09010 * 109.47129 * 299.99285 * 11 9 8 40 40 H 0.97000 * 120.00116 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00143 * 0.02562 * 23 22 12 42 42 H 1.08003 * 119.99602 * 180.23841 * 24 23 22 43 43 H 1.07995 * 120.00043 * 179.83073 * 25 24 23 44 44 H 1.07998 * 120.00385 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00708 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1316 0.7058 -0.0015 6 6 3.8457 3.0483 0.0001 7 6 5.3757 3.0483 -0.0014 8 8 5.8597 4.4174 -0.0002 9 6 7.1905 4.5933 -0.0017 10 8 7.9264 3.6351 -0.0035 11 6 7.7664 5.9858 -0.0001 12 6 9.2943 5.9058 -0.0017 13 1 9.6246 5.2820 -0.8323 14 6 9.7672 5.3048 1.2969 15 1 9.2379 5.5164 2.2142 16 6 10.8755 4.4847 1.3139 17 7 11.2718 3.9381 2.4424 18 14 11.8140 4.1501 -0.2663 19 1 11.2921 2.9124 -0.8994 20 1 11.6395 5.2938 -1.1973 21 1 13.2565 3.9782 0.0418 22 6 9.8697 7.2903 -0.1534 23 6 9.7022 8.2226 0.8535 24 6 10.2335 9.4914 0.7160 25 6 10.9251 9.8305 -0.4318 26 6 11.0880 8.8999 -1.4410 27 6 10.5600 7.6299 -1.3018 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8935 -0.5139 0.8899 33 1 1.3880 2.1185 0.0004 34 1 3.4828 3.5616 0.8905 35 1 3.4819 3.5627 -0.8894 36 1 5.7383 2.5352 -0.8919 37 1 5.7398 2.5339 0.8880 38 1 7.4317 6.5165 0.8912 39 1 7.4293 6.5195 -0.8888 40 1 12.0517 3.3614 2.4544 41 1 9.1594 7.9585 1.7491 42 1 10.1060 10.2185 1.5044 43 1 11.3377 10.8226 -0.5404 44 1 11.6279 9.1649 -2.3380 45 1 10.6874 6.9029 -2.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816120808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:27 Heat of formation + Delta-G solvation = -135.568644 kcal Electronic energy + Delta-G solvation = -25940.091006 eV Core-core repulsion = 22114.148015 eV Total energy + Delta-G solvation = -3825.942991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49134 -40.78660 -39.98542 -37.67865 -36.38337 -35.90038 -33.82171 -33.31122 -31.58586 -31.27389 -30.49776 -28.14768 -25.77049 -24.38293 -23.39697 -23.23109 -22.14484 -21.53359 -20.85170 -19.07531 -18.81203 -17.89742 -17.72547 -17.31791 -17.23764 -16.81810 -16.71822 -16.29639 -15.76948 -15.48716 -15.39938 -14.85409 -14.72112 -14.58293 -14.27428 -14.13338 -13.91359 -13.69613 -13.39521 -13.26380 -13.05833 -12.80293 -12.73813 -12.70484 -12.65272 -12.38186 -12.09295 -11.91193 -11.82697 -11.57162 -11.53593 -11.34338 -11.09292 -11.00201 -10.66240 -10.17341 -9.58658 -9.30628 -8.25515 -6.24403 0.70381 0.74000 1.30871 1.35973 1.40889 1.43875 1.50734 1.56048 2.36807 2.38881 3.08160 3.22446 3.58070 3.81464 3.88495 4.09058 4.11663 4.19688 4.20186 4.27074 4.33581 4.41432 4.42769 4.50358 4.50760 4.61272 4.68587 4.69488 4.85218 4.87349 4.93768 5.02505 5.04712 5.16456 5.26077 5.36866 5.41003 5.41624 5.54366 5.63670 5.79570 5.84299 6.02609 6.31090 6.37327 6.46810 6.76498 6.99946 7.17261 7.40924 8.91094 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.002699 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.246841 B =10372.492668 C =11353.938052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.712 5.712 4 C 0.513 3.487 5 O -0.593 6.593 6 C -0.124 4.124 7 C 0.077 3.923 8 O -0.355 6.355 9 C 0.459 3.541 10 O -0.523 6.523 11 C -0.084 4.084 12 C 0.053 3.947 13 H 0.037 0.963 14 C -0.476 4.476 15 H 0.039 0.961 16 C 0.023 3.977 17 N -0.951 5.951 18 Si 0.916 3.084 19 H -0.292 1.292 20 H -0.218 1.218 21 H -0.295 1.295 22 C -0.064 4.064 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.149 4.149 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.421 0.579 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.259 0.741 41 H 0.111 0.889 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 6.395 -8.904 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 N -0.366 5.366 4 C 0.300 3.700 5 O -0.474 6.474 6 C -0.163 4.163 7 C 0.003 3.997 8 O -0.273 6.273 9 C 0.302 3.698 10 O -0.409 6.409 11 C -0.121 4.121 12 C 0.034 3.966 13 H 0.055 0.945 14 C -0.514 4.514 15 H 0.057 0.943 16 C -0.174 4.174 17 N -0.593 5.593 18 Si 0.742 3.258 19 H -0.219 1.219 20 H -0.140 1.140 21 H -0.222 1.222 22 C -0.065 4.065 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.155 4.155 26 C -0.143 4.143 27 C -0.167 4.167 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.259 0.741 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.068 0.932 41 H 0.129 0.871 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.379 5.305 -8.834 22.836 hybrid contribution 0.829 -1.142 0.037 1.412 sum -19.549 4.163 -8.797 21.838 Atomic orbital electron populations 1.21950 0.91361 1.04229 1.03589 1.21412 0.96570 0.82383 1.01302 1.45893 1.06099 1.10133 1.74487 1.20748 0.83013 0.91151 0.75063 1.90764 1.56862 1.48220 1.51517 1.21443 0.92032 0.93863 1.08953 1.22561 0.95205 0.80113 1.01867 1.86397 1.24693 1.31468 1.84753 1.24301 0.79921 0.93786 0.71772 1.90723 1.60951 1.44400 1.44876 1.21447 0.95831 0.88841 1.05977 1.18089 0.91128 0.90828 0.96544 0.94508 1.20880 1.11095 1.26422 0.92965 0.94309 1.25657 0.98356 0.95108 0.98243 1.70023 1.26857 1.34113 1.28268 0.86212 0.77031 0.79979 0.82542 1.21854 1.14011 1.22205 1.20348 0.97358 0.95091 0.93681 1.21036 1.00806 0.93555 0.98074 1.21393 0.98189 0.96164 0.98612 1.21346 1.00047 1.00350 0.93803 1.21337 0.99869 0.92967 1.00098 1.21259 1.00357 0.97430 0.97621 0.90903 0.90735 0.89956 0.92705 0.92965 0.74056 0.84823 0.84193 0.92486 0.93605 0.87198 0.85933 0.93236 0.87138 0.84345 0.83621 0.84183 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.03 71.99 0.72 -0.27 16 2 C 0.11 1.53 6.39 86.38 0.55 2.09 16 3 N -0.71 -10.13 5.56 -463.05 -2.57 -12.70 16 4 C 0.51 11.82 7.83 87.66 0.69 12.51 16 5 O -0.59 -20.75 15.98 -3.02 -0.05 -20.79 16 6 C -0.12 -2.35 6.08 29.85 0.18 -2.16 16 7 C 0.08 2.47 4.76 71.98 0.34 2.81 16 8 O -0.36 -11.91 10.22 -51.48 -0.53 -12.44 16 9 C 0.46 19.07 7.71 71.23 0.55 19.62 16 10 O -0.52 -27.32 14.77 21.97 0.32 -26.99 16 11 C -0.08 -3.08 5.08 29.84 0.15 -2.93 16 12 C 0.05 2.40 1.17 -12.28 -0.01 2.39 16 13 H 0.04 1.76 4.94 -2.39 -0.01 1.75 16 14 C -0.48 -26.94 6.88 25.60 0.18 -26.76 16 15 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 16 C 0.02 1.41 5.47 84.65 0.46 1.87 16 17 N -0.95 -62.87 13.96 21.45 0.30 -62.57 16 18 Si 0.92 47.85 27.00 68.60 1.85 49.70 16 19 H -0.29 -15.87 7.11 99.48 0.71 -15.17 16 20 H -0.22 -9.94 4.72 99.48 0.47 -9.47 16 21 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 22 C -0.06 -2.56 4.65 -19.87 -0.09 -2.65 16 23 C -0.12 -4.28 8.93 22.27 0.20 -4.08 16 24 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 25 C -0.14 -3.70 10.05 22.27 0.22 -3.48 16 26 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 27 C -0.15 -5.29 8.69 22.27 0.19 -5.10 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.42 2.61 8.47 -92.71 -0.79 1.82 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 2.00 8.09 -2.39 -0.02 1.98 16 37 H 0.05 1.74 8.09 -2.38 -0.02 1.72 16 38 H 0.11 3.77 8.05 -2.39 -0.02 3.75 16 39 H 0.12 3.53 8.14 -2.38 -0.02 3.51 16 40 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 41 H 0.11 4.19 7.87 -2.91 -0.02 4.16 16 42 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 43 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 45 H 0.11 3.91 7.12 -2.91 -0.02 3.89 16 Total: -1.00 -85.98 378.55 4.08 -81.91 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -0.04 Total: 16.98 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.78 Total: -13.09 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -2.27 Total: -75.28 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -0.25 Total: -60.22 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.85 Total: 49.70 kcal Total: -85.98 4.08 -81.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816120808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.663 kcal (2) G-P(sol) polarization free energy of solvation -85.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds