Wall clock time and date at job start Tue Mar 31 2020 12:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46857 * 2 1 4 4 C 1.34780 * 120.00297 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99257 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00170 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47069 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.46829 * 304.99720 * 7 6 4 9 9 C 1.53004 * 109.47224 * 184.99846 * 7 6 4 10 10 O 1.45196 * 109.47185 * 64.99619 * 7 6 4 11 11 C 1.34235 * 117.00319 * 209.99984 * 10 7 6 12 12 O 1.20824 * 119.99561 * 359.97438 * 11 10 7 13 13 C 1.50693 * 120.00378 * 180.02562 * 11 10 7 14 14 C 1.50697 * 109.47226 * 180.02562 * 13 11 10 15 15 C 1.37632 * 120.12988 * 264.99824 * 14 13 11 16 16 C 1.38616 * 120.25141 * 180.29923 * 15 14 13 17 17 C 1.38657 * 120.49894 * 359.43993 * 16 15 14 18 18 C 1.37599 * 120.24868 * 0.56079 * 17 16 15 19 19 C 1.40698 * 120.12600 * 85.02373 * 14 13 11 20 20 C 1.41401 * 120.24431 * 359.95261 * 19 14 13 21 21 H 1.07996 * 120.00140 * 329.79416 * 20 19 14 22 22 C 1.39943 * 119.99611 * 149.80024 * 20 19 14 23 23 N 1.30828 * 119.99947 * 162.08483 * 22 20 19 24 24 Si 1.86803 * 120.00186 * 342.08044 * 22 20 19 25 25 H 1.48499 * 109.47049 * 95.39710 * 24 22 20 26 26 H 1.48502 * 109.46957 * 215.39592 * 24 22 20 27 27 H 1.48500 * 109.46884 * 335.39299 * 24 22 20 28 28 H 1.08996 * 109.47087 * 60.00382 * 1 2 3 29 29 H 1.09000 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47095 * 299.99620 * 1 2 3 31 31 H 1.09000 * 109.47095 * 240.00380 * 2 1 3 32 32 H 1.08996 * 109.47087 * 119.99618 * 2 1 3 33 33 H 0.97007 * 120.00117 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47591 * 59.99869 * 6 4 3 35 35 H 1.09003 * 109.47153 * 299.99659 * 6 4 3 36 36 H 1.08997 * 109.47202 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47115 * 299.99699 * 9 7 6 38 38 H 1.08997 * 109.46849 * 60.00039 * 9 7 6 39 39 H 1.08999 * 109.47136 * 59.99898 * 13 11 10 40 40 H 1.09003 * 109.46758 * 300.00143 * 13 11 10 41 41 H 1.08002 * 119.87609 * 0.02601 * 15 14 13 42 42 H 1.07993 * 119.75152 * 179.70460 * 16 15 14 43 43 H 1.08003 * 119.87995 * 180.30216 * 17 16 15 44 44 H 1.08000 * 120.12935 * 179.74001 * 18 17 16 45 45 H 0.96994 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6277 0.0005 5 8 4.1315 0.7058 0.0015 6 6 3.8456 3.0484 0.0011 7 6 5.3756 3.0485 0.0010 8 1 5.7390 2.4588 0.8425 9 6 5.8856 4.4855 0.1273 10 8 5.8596 2.4705 -1.2399 11 6 7.0393 1.8316 -1.1954 12 8 7.6476 1.7583 -0.1540 13 6 7.6056 1.2069 -2.4444 14 6 8.9276 0.5574 -2.1262 15 6 10.1023 1.2442 -2.3331 16 6 11.3201 0.6469 -2.0471 17 6 11.3695 -0.6424 -1.5394 18 6 10.2078 -1.3478 -1.3247 19 6 8.9659 -0.7536 -1.6170 20 6 7.7656 -1.4687 -1.3999 21 1 6.8598 -0.9387 -1.1449 22 6 7.7513 -2.8633 -1.5154 23 7 6.7726 -3.5534 -0.9886 24 14 9.1297 -3.7396 -2.4219 25 1 10.1533 -4.1936 -1.4465 26 1 8.5787 -4.9144 -3.1441 27 1 9.7527 -2.8075 -3.3957 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3879 2.1186 -0.0004 34 1 3.4819 3.5621 0.8911 35 1 3.4826 3.5625 -0.8889 36 1 6.9756 4.4856 0.1276 37 1 5.5222 5.0753 -0.7143 38 1 5.5223 4.9194 1.0588 39 1 7.7516 1.9770 -3.2018 40 1 6.9125 0.4543 -2.8204 41 1 10.0754 2.2507 -2.7239 42 1 12.2370 1.1915 -2.2170 43 1 12.3237 -1.0963 -1.3156 44 1 10.2488 -2.3535 -0.9331 45 1 6.7625 -4.5199 -1.0689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836004519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:26 Heat of formation + Delta-G solvation = -118.806689 kcal Electronic energy + Delta-G solvation = -27233.965495 eV Core-core repulsion = 23408.749357 eV Total energy + Delta-G solvation = -3825.216138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.11345 -39.24416 -37.80152 -36.01518 -35.12973 -33.49174 -33.04056 -31.76420 -30.69601 -30.24039 -27.87172 -27.15407 -24.84208 -23.29182 -22.17924 -21.28830 -20.73515 -20.05217 -19.29887 -17.26609 -17.14467 -17.00375 -16.18207 -15.67339 -15.60979 -15.41578 -15.12738 -14.40557 -14.19464 -14.01181 -13.77794 -13.64217 -13.06492 -13.02136 -12.71583 -12.62890 -12.24004 -12.17030 -12.06897 -11.94244 -11.90507 -11.72634 -11.47743 -11.32575 -11.12196 -10.73071 -10.71741 -10.65023 -10.17424 -10.11334 -9.63428 -9.62556 -9.53763 -9.45144 -9.03658 -9.00321 -7.54056 -7.43105 -6.82025 -4.36894 2.57300 2.79386 2.83591 3.16937 3.19006 3.19392 3.26428 3.39775 3.47269 4.07316 4.60784 4.67463 4.72944 4.93547 4.98575 5.17258 5.21407 5.26160 5.32934 5.44444 5.52199 5.60723 5.72450 5.81476 5.84855 5.94573 5.96501 5.99838 6.12615 6.14934 6.22111 6.28135 6.40271 6.48615 6.66628 6.79701 7.03325 7.18743 7.29540 7.52588 7.53740 7.73787 7.82852 8.00929 8.23447 8.40212 8.50842 8.68979 8.78331 8.92715 10.19623 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.004559 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.487125 B = 6140.109964 C = 8180.417288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.739 5.739 4 C 0.501 3.499 5 O -0.505 6.505 6 C -0.136 4.136 7 C 0.097 3.903 8 H 0.091 0.909 9 C -0.167 4.167 10 O -0.356 6.356 11 C 0.469 3.531 12 O -0.493 6.493 13 C -0.045 4.045 14 C -0.178 4.178 15 C -0.065 4.065 16 C -0.247 4.247 17 C -0.077 4.077 18 C -0.234 4.234 19 C 0.110 3.890 20 C -0.440 4.440 21 H 0.094 0.906 22 C 0.085 3.915 23 N -0.802 5.802 24 Si 0.909 3.091 25 H -0.272 1.272 26 H -0.292 1.292 27 H -0.243 1.243 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 11.829 -0.247 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.394 5.394 4 C 0.287 3.713 5 O -0.378 6.378 6 C -0.176 4.176 7 C 0.041 3.959 8 H 0.109 0.891 9 C -0.224 4.224 10 O -0.274 6.274 11 C 0.311 3.689 12 O -0.379 6.379 13 C -0.082 4.082 14 C -0.180 4.180 15 C -0.083 4.083 16 C -0.266 4.266 17 C -0.095 4.095 18 C -0.253 4.253 19 C 0.107 3.893 20 C -0.468 4.468 21 H 0.112 0.888 22 C -0.135 4.135 23 N -0.426 5.426 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.166 1.166 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.229 0.771 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.033 10.886 0.173 15.500 hybrid contribution 0.096 -0.196 -0.021 0.219 sum -10.936 10.690 0.152 15.294 Atomic orbital electron populations 1.21989 0.94747 1.03141 1.02096 1.21284 0.93768 0.83131 1.02935 1.46031 1.07083 1.08675 1.77565 1.20655 0.82255 0.91728 0.76710 1.90915 1.54716 1.45891 1.46253 1.21828 0.95760 0.95005 1.05010 1.22203 0.91460 0.94113 0.88115 0.89081 1.22186 1.02683 0.95262 1.02286 1.86524 1.38278 1.66050 1.36558 1.24076 0.78094 0.74647 0.92063 1.90611 1.59420 1.55295 1.32534 1.19968 0.96707 0.99494 0.92038 1.19062 0.91309 0.96968 1.10628 1.20431 0.92628 0.96872 0.98379 1.20299 0.95999 0.96957 1.13368 1.20599 0.96488 0.94677 0.97778 1.20992 0.93029 1.00352 1.10972 1.17494 0.92583 0.91368 0.87852 1.19550 0.96725 0.91178 1.39366 0.88766 1.26186 0.96347 0.97826 0.93094 1.69747 1.31284 1.08686 1.32854 0.86357 0.80610 0.78423 0.81016 1.19776 1.21975 1.16635 0.92146 0.90867 0.92240 0.91249 0.91476 0.77079 0.87472 0.87968 0.91488 0.91734 0.91122 0.89454 0.87272 0.89023 0.88994 0.89020 0.88308 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.03 37.16 0.37 -0.85 16 2 C 0.11 1.31 6.39 -4.04 -0.03 1.28 16 3 N -0.74 -8.16 5.56 -60.29 -0.33 -8.49 16 4 C 0.50 7.51 7.71 -10.99 -0.08 7.43 16 5 O -0.50 -10.94 15.42 -8.39 -0.13 -11.07 16 6 C -0.14 -1.53 5.42 -27.89 -0.15 -1.68 16 7 C 0.10 1.50 2.10 -26.73 -0.06 1.44 16 8 H 0.09 1.71 6.97 -51.93 -0.36 1.35 16 9 C -0.17 -1.99 9.55 37.16 0.35 -1.63 16 10 O -0.36 -6.72 9.13 -44.45 -0.41 -7.12 16 11 C 0.47 10.38 7.54 36.00 0.27 10.65 16 12 O -0.49 -12.51 15.25 -18.75 -0.29 -12.80 16 13 C -0.04 -0.95 5.31 -29.04 -0.15 -1.11 16 14 C -0.18 -4.34 4.43 -103.92 -0.46 -4.80 16 15 C -0.06 -1.45 9.66 -39.66 -0.38 -1.83 16 16 C -0.25 -5.49 10.05 -39.29 -0.39 -5.88 16 17 C -0.08 -1.80 10.02 -39.66 -0.40 -2.20 16 18 C -0.23 -6.08 7.17 -38.87 -0.28 -6.36 16 19 C 0.11 2.98 5.10 -106.82 -0.54 2.43 16 20 C -0.44 -12.65 8.55 -37.74 -0.32 -12.98 16 21 H 0.09 2.95 7.00 -52.49 -0.37 2.59 16 22 C 0.08 2.34 5.41 -17.34 -0.09 2.25 16 23 N -0.80 -22.63 13.93 55.55 0.77 -21.86 16 24 Si 0.91 21.73 24.52 -169.99 -4.17 17.56 16 25 H -0.27 -6.35 6.71 56.52 0.38 -5.97 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.24 -5.89 6.86 56.52 0.39 -5.50 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.40 2.78 8.47 -40.82 -0.35 2.43 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 40 H 0.11 2.41 7.13 -51.93 -0.37 2.04 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 44 H 0.10 2.55 4.77 -52.49 -0.25 2.30 16 45 H 0.28 7.20 8.30 -40.82 -0.34 6.86 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -36.00 375.20 -8.03 -44.03 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.78 Total: 7.93 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -2.35 Total: -13.83 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.44 Total: -30.35 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.82 Total: -30.98 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.17 Total: 17.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.00 -8.03 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836004519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.780 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds