Wall clock time and date at job start Tue Mar 31 2020 12:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46857 * 2 1 4 4 C 1.34780 * 120.00297 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99257 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00170 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47069 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.46829 * 304.99720 * 7 6 4 9 9 C 1.53004 * 109.47224 * 184.99846 * 7 6 4 10 10 O 1.45196 * 109.47185 * 64.99619 * 7 6 4 11 11 C 1.34235 * 117.00319 * 209.99984 * 10 7 6 12 12 O 1.20824 * 119.99561 * 359.97438 * 11 10 7 13 13 C 1.50693 * 120.00378 * 180.02562 * 11 10 7 14 14 C 1.50697 * 109.47226 * 180.02562 * 13 11 10 15 15 C 1.37632 * 120.12988 * 264.99824 * 14 13 11 16 16 C 1.38616 * 120.25141 * 180.29923 * 15 14 13 17 17 C 1.38657 * 120.49894 * 359.43993 * 16 15 14 18 18 C 1.37599 * 120.24868 * 0.56079 * 17 16 15 19 19 C 1.40698 * 120.12600 * 85.02373 * 14 13 11 20 20 C 1.41401 * 120.24431 * 359.95261 * 19 14 13 21 21 H 1.07996 * 120.00140 * 329.79416 * 20 19 14 22 22 C 1.39943 * 119.99611 * 149.80024 * 20 19 14 23 23 N 1.30828 * 119.99947 * 162.08483 * 22 20 19 24 24 Si 1.86803 * 120.00186 * 342.08044 * 22 20 19 25 25 H 1.48499 * 109.47049 * 95.39710 * 24 22 20 26 26 H 1.48502 * 109.46957 * 215.39592 * 24 22 20 27 27 H 1.48500 * 109.46884 * 335.39299 * 24 22 20 28 28 H 1.08996 * 109.47087 * 60.00382 * 1 2 3 29 29 H 1.09000 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47095 * 299.99620 * 1 2 3 31 31 H 1.09000 * 109.47095 * 240.00380 * 2 1 3 32 32 H 1.08996 * 109.47087 * 119.99618 * 2 1 3 33 33 H 0.97007 * 120.00117 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47591 * 59.99869 * 6 4 3 35 35 H 1.09003 * 109.47153 * 299.99659 * 6 4 3 36 36 H 1.08997 * 109.47202 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47115 * 299.99699 * 9 7 6 38 38 H 1.08997 * 109.46849 * 60.00039 * 9 7 6 39 39 H 1.08999 * 109.47136 * 59.99898 * 13 11 10 40 40 H 1.09003 * 109.46758 * 300.00143 * 13 11 10 41 41 H 1.08002 * 119.87609 * 0.02601 * 15 14 13 42 42 H 1.07993 * 119.75152 * 179.70460 * 16 15 14 43 43 H 1.08003 * 119.87995 * 180.30216 * 17 16 15 44 44 H 1.08000 * 120.12935 * 179.74001 * 18 17 16 45 45 H 0.96994 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6277 0.0005 5 8 4.1315 0.7058 0.0015 6 6 3.8456 3.0484 0.0011 7 6 5.3756 3.0485 0.0010 8 1 5.7390 2.4588 0.8425 9 6 5.8856 4.4855 0.1273 10 8 5.8596 2.4705 -1.2399 11 6 7.0393 1.8316 -1.1954 12 8 7.6476 1.7583 -0.1540 13 6 7.6056 1.2069 -2.4444 14 6 8.9276 0.5574 -2.1262 15 6 10.1023 1.2442 -2.3331 16 6 11.3201 0.6469 -2.0471 17 6 11.3695 -0.6424 -1.5394 18 6 10.2078 -1.3478 -1.3247 19 6 8.9659 -0.7536 -1.6170 20 6 7.7656 -1.4687 -1.3999 21 1 6.8598 -0.9387 -1.1449 22 6 7.7513 -2.8633 -1.5154 23 7 6.7726 -3.5534 -0.9886 24 14 9.1297 -3.7396 -2.4219 25 1 10.1533 -4.1936 -1.4465 26 1 8.5787 -4.9144 -3.1441 27 1 9.7527 -2.8075 -3.3957 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3879 2.1186 -0.0004 34 1 3.4819 3.5621 0.8911 35 1 3.4826 3.5625 -0.8889 36 1 6.9756 4.4856 0.1276 37 1 5.5222 5.0753 -0.7143 38 1 5.5223 4.9194 1.0588 39 1 7.7516 1.9770 -3.2018 40 1 6.9125 0.4543 -2.8204 41 1 10.0754 2.2507 -2.7239 42 1 12.2370 1.1915 -2.2170 43 1 12.3237 -1.0963 -1.3156 44 1 10.2488 -2.3535 -0.9331 45 1 6.7625 -4.5199 -1.0689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836004519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:25 Heat of formation + Delta-G solvation = -143.637658 kcal Electronic energy + Delta-G solvation = -27235.042246 eV Core-core repulsion = 23408.749357 eV Total energy + Delta-G solvation = -3826.292889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62444 -40.63737 -39.61719 -37.58640 -36.30265 -35.51856 -34.35468 -33.51278 -32.20751 -31.65963 -28.97095 -28.78573 -26.82718 -24.36749 -23.52870 -23.12832 -22.15585 -21.33228 -21.05504 -19.28970 -18.74524 -18.17593 -17.69626 -17.28987 -17.06309 -16.78352 -16.51460 -16.16349 -15.80957 -15.53051 -15.23419 -15.02944 -14.60457 -14.43789 -14.17494 -13.86866 -13.83953 -13.70758 -13.36818 -13.15816 -13.06031 -12.93937 -12.82779 -12.72323 -12.70912 -12.53341 -12.39091 -12.01773 -11.94150 -11.59605 -11.56453 -11.41950 -11.29251 -10.99621 -10.91132 -10.13286 -9.43218 -9.36072 -8.87581 -6.49152 0.71835 0.87778 1.23259 1.36448 1.44608 1.47455 1.66330 1.96287 2.11941 2.20204 2.62510 3.49379 3.60898 3.74806 3.95512 4.09483 4.10673 4.15535 4.19710 4.22716 4.37221 4.43716 4.47991 4.51188 4.57571 4.62004 4.66801 4.83949 4.87491 4.90292 4.95577 4.96714 5.01556 5.13162 5.19017 5.21861 5.34290 5.46874 5.56770 5.67744 5.84008 5.92656 6.02496 6.27057 6.43986 6.58112 6.77097 6.85437 7.00306 7.34262 8.21458 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.004559 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.487125 B = 6140.109964 C = 8180.417288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.108 3.892 3 N -0.716 5.716 4 C 0.491 3.509 5 O -0.588 6.588 6 C -0.123 4.123 7 C 0.083 3.917 8 H 0.044 0.956 9 C -0.156 4.156 10 O -0.354 6.354 11 C 0.472 3.528 12 O -0.537 6.537 13 C -0.047 4.047 14 C -0.185 4.185 15 C -0.071 4.071 16 C -0.228 4.228 17 C -0.085 4.085 18 C -0.256 4.256 19 C 0.085 3.915 20 C -0.473 4.473 21 H 0.044 0.956 22 C 0.042 3.958 23 N -0.854 5.854 24 Si 0.972 3.028 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.247 1.247 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.421 0.579 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.092 0.908 45 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 15.197 -1.502 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 N -0.370 5.370 4 C 0.278 3.722 5 O -0.467 6.467 6 C -0.162 4.162 7 C 0.028 3.972 8 H 0.063 0.937 9 C -0.213 4.213 10 O -0.272 6.272 11 C 0.316 3.684 12 O -0.426 6.426 13 C -0.084 4.084 14 C -0.187 4.187 15 C -0.089 4.089 16 C -0.247 4.247 17 C -0.103 4.103 18 C -0.275 4.275 19 C 0.083 3.917 20 C -0.502 4.502 21 H 0.062 0.938 22 C -0.172 4.172 23 N -0.480 5.480 24 Si 0.795 3.205 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.170 1.170 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.259 0.741 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.152 0.848 40 H 0.108 0.892 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.582 14.312 -1.092 17.833 hybrid contribution -0.053 -0.995 0.405 1.076 sum -10.634 13.317 -0.687 17.056 Atomic orbital electron populations 1.21912 0.90701 1.04078 1.03836 1.21282 0.96933 0.83141 1.00278 1.45868 1.06457 1.09333 1.75384 1.21504 0.82765 0.92700 0.75191 1.90915 1.56920 1.48561 1.50282 1.21944 0.92391 0.92808 1.09048 1.22643 0.94305 0.95281 0.84990 0.93722 1.22152 1.01077 0.92773 1.05297 1.86464 1.36617 1.65543 1.38559 1.24101 0.78594 0.74161 0.91527 1.90577 1.60932 1.57153 1.33930 1.20031 0.95277 1.00171 0.92936 1.19475 0.93529 0.96245 1.09420 1.20920 0.91825 0.98536 0.97623 1.20906 0.97582 0.96328 1.09870 1.21027 0.96911 0.95233 0.97120 1.21138 0.93733 1.00739 1.11929 1.17715 0.92368 0.92880 0.88783 1.19363 0.95993 0.92038 1.42826 0.93811 1.26965 0.98704 0.98026 0.93470 1.69804 1.33568 1.09380 1.35253 0.85407 0.77819 0.77520 0.79777 1.18829 1.20191 1.17006 0.90464 0.90443 0.90255 0.94399 0.94011 0.74110 0.82546 0.84240 0.94011 0.88918 0.87756 0.84843 0.89164 0.85007 0.84746 0.85554 0.89022 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.03 71.98 0.72 -1.33 16 2 C 0.11 2.68 6.39 86.38 0.55 3.23 16 3 N -0.72 -15.60 5.56 -463.06 -2.57 -18.17 16 4 C 0.49 15.18 7.71 87.65 0.68 15.86 16 5 O -0.59 -28.06 15.42 10.29 0.16 -27.90 16 6 C -0.12 -2.52 5.42 29.85 0.16 -2.36 16 7 C 0.08 2.58 2.10 30.60 0.06 2.64 16 8 H 0.04 1.81 6.97 -2.39 -0.02 1.79 16 9 C -0.16 -3.37 9.55 71.98 0.69 -2.68 16 10 O -0.35 -13.79 9.13 -46.50 -0.42 -14.21 16 11 C 0.47 21.91 7.54 71.23 0.54 22.45 16 12 O -0.54 -28.91 15.25 21.97 0.34 -28.57 16 13 C -0.05 -2.06 5.31 29.10 0.15 -1.91 16 14 C -0.19 -9.08 4.43 -19.41 -0.09 -9.17 16 15 C -0.07 -2.98 9.66 22.22 0.21 -2.77 16 16 C -0.23 -9.20 10.05 22.46 0.23 -8.97 16 17 C -0.08 -3.74 10.02 22.22 0.22 -3.52 16 18 C -0.26 -13.35 7.17 22.73 0.16 -13.19 16 19 C 0.09 4.77 5.10 -21.29 -0.11 4.66 16 20 C -0.47 -29.47 8.55 23.46 0.20 -29.27 16 21 H 0.04 3.08 7.00 -2.91 -0.02 3.06 16 22 C 0.04 2.47 5.41 85.26 0.46 2.94 16 23 N -0.85 -52.05 13.93 21.83 0.30 -51.74 16 24 Si 0.97 46.56 24.52 68.60 1.68 48.24 16 25 H -0.26 -12.04 6.71 99.48 0.67 -11.38 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.25 -11.78 6.86 99.48 0.68 -11.10 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.42 4.81 8.47 -92.70 -0.79 4.02 16 34 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.13 4.44 8.05 -2.39 -0.02 4.42 16 40 H 0.09 4.30 7.13 -2.39 -0.02 4.29 16 41 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 43 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.09 4.81 4.77 -2.91 -0.01 4.80 16 45 H 0.29 15.86 8.30 -92.71 -0.77 15.09 16 Total: -1.00 -90.69 375.20 4.48 -86.20 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.15 Total: 29.51 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.85 Total: -23.37 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -2.27 Total: -69.91 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: 0.07 Total: -70.68 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.68 Total: 48.24 kcal Total: -90.69 4.48 -86.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836004519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.433 kcal (2) G-P(sol) polarization free energy of solvation -90.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds