Wall clock time and date at job start Tue Mar 31 2020 12:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47023 * 2 1 4 4 O 1.45192 * 109.47170 * 119.99908 * 2 1 3 5 5 C 1.34224 * 117.00015 * 150.00167 * 4 2 1 6 6 O 1.20824 * 120.00301 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00118 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.47428 * 59.99827 * 7 5 4 9 9 C 1.52991 * 109.47128 * 299.99789 * 7 5 4 10 10 N 1.46508 * 109.47226 * 179.97438 * 7 5 4 11 11 C 1.34768 * 120.00195 * 204.99848 * 10 7 5 12 12 O 1.21283 * 120.00153 * 359.97438 * 11 10 7 13 13 C 1.50698 * 119.99965 * 180.02562 * 11 10 7 14 14 C 1.50701 * 109.47150 * 180.02562 * 13 11 10 15 15 C 1.37636 * 120.12941 * 264.99955 * 14 13 11 16 16 C 1.38611 * 120.25061 * 180.29574 * 15 14 13 17 17 C 1.38653 * 120.50140 * 359.44427 * 16 15 14 18 18 C 1.37598 * 120.24629 * 0.55396 * 17 16 15 19 19 C 1.40704 * 120.12792 * 85.01908 * 14 13 11 20 20 C 1.41387 * 120.24480 * 359.95991 * 19 14 13 21 21 H 1.08006 * 119.99793 * 334.08076 * 20 19 14 22 22 C 1.39940 * 120.00234 * 154.08580 * 20 19 14 23 23 N 1.30822 * 119.99912 * 343.61546 * 22 20 19 24 24 Si 1.86803 * 120.00192 * 163.62649 * 22 20 19 25 25 H 1.48494 * 109.47516 * 89.99468 * 24 22 20 26 26 H 1.48504 * 109.46852 * 209.99866 * 24 22 20 27 27 H 1.48504 * 109.47021 * 329.99095 * 24 22 20 28 28 H 1.09004 * 109.47067 * 300.00226 * 1 2 3 29 29 H 1.09002 * 109.47404 * 59.99560 * 1 2 3 30 30 H 1.08998 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46750 * 240.00442 * 2 1 3 32 32 H 1.09002 * 109.46833 * 299.99927 * 3 2 1 33 33 H 1.09000 * 109.46893 * 59.99932 * 3 2 1 34 34 H 1.08997 * 109.47044 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47215 * 299.99794 * 9 7 5 36 36 H 1.08997 * 109.47498 * 59.99817 * 9 7 5 37 37 H 1.09004 * 109.47547 * 179.97438 * 9 7 5 38 38 H 0.96999 * 119.99681 * 25.00603 * 10 7 5 39 39 H 1.08990 * 109.47195 * 60.00231 * 13 11 10 40 40 H 1.09001 * 109.47170 * 299.99896 * 13 11 10 41 41 H 1.08004 * 119.87777 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.75152 * 179.70481 * 16 15 14 43 43 H 1.08004 * 119.87985 * 180.29954 * 17 16 15 44 44 H 1.08002 * 120.12910 * 179.74432 * 18 17 16 45 45 H 0.97001 * 120.00439 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 3.1936 -1.3169 1.0851 6 8 3.8015 -1.2996 0.0410 7 6 3.7594 -2.0496 2.2743 8 1 3.0663 -2.8324 2.5822 9 6 3.9642 -1.0667 3.4287 10 7 5.0448 -2.6514 1.9108 11 6 5.4965 -3.7309 2.5793 12 8 4.8392 -4.2040 3.4821 13 6 6.8190 -4.3495 2.2058 14 6 7.0895 -5.5335 3.0979 15 6 7.8541 -5.3833 4.2325 16 6 8.1096 -6.4719 5.0516 17 6 7.5900 -7.7204 4.7453 18 6 6.8229 -7.8939 3.6162 19 6 6.5618 -6.7970 2.7741 20 6 5.7746 -6.9633 1.6115 21 1 5.2294 -6.1247 1.2040 22 6 5.7017 -8.2144 0.9888 23 7 6.5857 -9.1371 1.2691 24 14 4.3422 -8.5669 -0.2430 25 1 4.7991 -8.1923 -1.6053 26 1 4.0100 -10.0140 -0.2127 27 1 3.1367 -7.7748 0.1101 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 4.6574 -0.2839 3.1208 36 1 3.0077 -0.6193 3.6990 37 1 4.3730 -1.5967 4.2890 38 1 5.5708 -2.2727 1.1891 39 1 7.6125 -3.6126 2.3289 40 1 6.7860 -4.6778 1.1669 41 1 8.2602 -4.4144 4.4832 42 1 8.7146 -6.3459 5.9373 43 1 7.7914 -8.5607 5.3932 44 1 6.4225 -8.8681 3.3773 45 1 6.5350 -10.0044 0.8378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837028315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:51 Heat of formation + Delta-G solvation = -117.914214 kcal Electronic energy + Delta-G solvation = -26751.034957 eV Core-core repulsion = 22925.857520 eV Total energy + Delta-G solvation = -3825.177437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92901 -39.26222 -37.49872 -36.97697 -34.83175 -33.58805 -33.43128 -31.89079 -30.42778 -29.40895 -27.64400 -26.74983 -25.25199 -24.82417 -22.30031 -20.93416 -20.83833 -20.21072 -19.49116 -17.94334 -17.25709 -17.02151 -16.39504 -16.03388 -15.45143 -15.21849 -14.76676 -14.55775 -14.41939 -13.83521 -13.76112 -13.56227 -13.27729 -13.11400 -12.84707 -12.65783 -12.55855 -12.41097 -12.34917 -12.05516 -11.76117 -11.69150 -11.53972 -11.24531 -11.12467 -10.99494 -10.94446 -10.82490 -10.68072 -10.46617 -10.36705 -9.45281 -9.35965 -9.24462 -9.11965 -8.91924 -7.28143 -7.26097 -6.70635 -4.31015 2.00525 2.26030 2.82554 3.01321 3.09247 3.14846 3.28169 3.30323 3.61148 3.97041 4.36207 4.44980 4.56490 4.69470 4.80172 4.95289 5.06298 5.16995 5.35119 5.39359 5.41324 5.46159 5.60014 5.69101 5.72857 5.78701 5.83700 6.03990 6.06553 6.15912 6.25323 6.31773 6.46411 6.54316 6.61175 6.83336 7.12169 7.32887 7.45530 7.53653 7.66911 7.84696 7.96802 8.10537 8.16460 8.34935 8.67948 8.78209 8.95072 9.04821 10.23589 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.003579 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.222621 B = 7822.566483 C = 9395.508318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.169 4.169 4 O -0.348 6.348 5 C 0.462 3.538 6 O -0.503 6.503 7 C 0.154 3.846 8 H 0.125 0.875 9 C -0.156 4.156 10 N -0.733 5.733 11 C 0.521 3.479 12 O -0.517 6.517 13 C -0.069 4.069 14 C -0.182 4.182 15 C -0.080 4.080 16 C -0.240 4.240 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.457 4.457 21 H 0.074 0.926 22 C 0.078 3.922 23 N -0.795 5.795 24 Si 0.901 3.099 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.262 1.262 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.405 0.595 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 16.887 -2.953 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 C -0.226 4.226 4 O -0.264 6.264 5 C 0.304 3.696 6 O -0.390 6.390 7 C 0.047 3.953 8 H 0.142 0.858 9 C -0.214 4.214 10 N -0.391 5.391 11 C 0.309 3.691 12 O -0.390 6.390 13 C -0.108 4.108 14 C -0.184 4.184 15 C -0.098 4.098 16 C -0.259 4.259 17 C -0.125 4.125 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.486 4.486 21 H 0.092 0.908 22 C -0.139 4.139 23 N -0.420 5.420 24 Si 0.725 3.275 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.186 1.186 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.241 0.759 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.334 16.303 -2.696 18.507 hybrid contribution -0.345 -0.027 -1.154 1.205 sum -8.679 16.276 -3.850 18.843 Atomic orbital electron populations 1.21894 0.92258 1.03405 1.03148 1.22776 0.95099 0.92692 0.87094 1.22208 1.02182 0.95159 1.03097 1.86563 1.36253 1.62469 1.41160 1.23885 0.79429 0.76250 0.89991 1.90649 1.59449 1.58329 1.30524 1.20273 0.88589 0.96503 0.89955 0.85783 1.22113 1.03065 0.98519 0.97721 1.46086 1.20368 1.32700 1.39903 1.21342 0.88650 0.77771 0.81326 1.90687 1.58110 1.60598 1.29593 1.20256 0.92088 0.96398 1.02074 1.19035 1.06546 0.94013 0.98793 1.20297 0.98595 0.96297 0.94656 1.20300 1.09716 0.93935 1.01997 1.20675 0.99007 0.95566 0.97258 1.21288 1.02534 0.99788 0.94249 1.17333 0.88572 0.90057 0.91341 1.19468 1.25159 0.95307 1.08693 0.90824 1.25861 0.95269 0.95727 0.97085 1.69818 1.29929 1.05171 1.37128 0.86427 0.82125 0.78367 0.80533 1.19514 1.20060 1.18597 0.91290 0.90359 0.91506 0.89611 0.90688 0.91450 0.91924 0.92103 0.90569 0.90088 0.75856 0.90346 0.88330 0.89727 0.89673 0.89600 0.86561 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.57 37.16 0.36 -0.69 16 2 C 0.08 0.73 3.18 -26.73 -0.09 0.64 16 3 C -0.17 -1.30 9.55 37.16 0.35 -0.94 16 4 O -0.35 -4.01 9.78 -39.24 -0.38 -4.39 16 5 C 0.46 6.12 7.30 36.01 0.26 6.38 16 6 O -0.50 -7.59 15.06 -18.75 -0.28 -7.87 16 7 C 0.15 2.10 3.09 -69.08 -0.21 1.89 16 8 H 0.12 1.85 7.58 -51.93 -0.39 1.46 16 9 C -0.16 -1.76 9.42 37.15 0.35 -1.41 16 10 N -0.73 -11.25 4.95 -54.93 -0.27 -11.52 16 11 C 0.52 10.07 7.43 -10.99 -0.08 9.99 16 12 O -0.52 -11.95 15.70 5.55 0.09 -11.87 16 13 C -0.07 -1.35 5.18 -29.04 -0.15 -1.50 16 14 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 15 C -0.08 -1.85 9.66 -39.66 -0.38 -2.23 16 16 C -0.24 -5.60 10.05 -39.29 -0.39 -6.00 16 17 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 18 C -0.16 -4.28 8.68 -38.87 -0.34 -4.62 16 19 C 0.13 3.48 5.56 -106.83 -0.59 2.88 16 20 C -0.46 -12.15 8.14 -37.75 -0.31 -12.46 16 21 H 0.07 1.92 6.68 -52.48 -0.35 1.57 16 22 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 23 N -0.79 -20.72 10.97 55.55 0.61 -20.11 16 24 Si 0.90 19.23 29.59 -169.99 -5.03 14.20 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.90 7.16 -51.93 -0.37 0.53 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.41 5.57 7.79 -40.82 -0.32 5.25 16 39 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 40 H 0.10 1.94 7.06 -51.93 -0.37 1.58 16 41 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.12 3.21 6.22 -52.49 -0.33 2.89 16 45 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -31.32 380.04 -8.47 -39.78 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.75 Total: 10.08 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.17 Total: -14.03 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.34 Total: -31.63 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.58 Total: -24.13 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.32 -8.47 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837028315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.130 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds