Wall clock time and date at job start Tue Mar 31 2020 12:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47023 * 2 1 4 4 O 1.45192 * 109.47170 * 119.99908 * 2 1 3 5 5 C 1.34224 * 117.00015 * 150.00167 * 4 2 1 6 6 O 1.20824 * 120.00301 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00118 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.47428 * 59.99827 * 7 5 4 9 9 C 1.52991 * 109.47128 * 299.99789 * 7 5 4 10 10 N 1.46508 * 109.47226 * 179.97438 * 7 5 4 11 11 C 1.34768 * 120.00195 * 204.99848 * 10 7 5 12 12 O 1.21283 * 120.00153 * 359.97438 * 11 10 7 13 13 C 1.50698 * 119.99965 * 180.02562 * 11 10 7 14 14 C 1.50701 * 109.47150 * 180.02562 * 13 11 10 15 15 C 1.37636 * 120.12941 * 264.99955 * 14 13 11 16 16 C 1.38611 * 120.25061 * 180.29574 * 15 14 13 17 17 C 1.38653 * 120.50140 * 359.44427 * 16 15 14 18 18 C 1.37598 * 120.24629 * 0.55396 * 17 16 15 19 19 C 1.40704 * 120.12792 * 85.01908 * 14 13 11 20 20 C 1.41387 * 120.24480 * 359.95991 * 19 14 13 21 21 H 1.08006 * 119.99793 * 334.08076 * 20 19 14 22 22 C 1.39940 * 120.00234 * 154.08580 * 20 19 14 23 23 N 1.30822 * 119.99912 * 343.61546 * 22 20 19 24 24 Si 1.86803 * 120.00192 * 163.62649 * 22 20 19 25 25 H 1.48494 * 109.47516 * 89.99468 * 24 22 20 26 26 H 1.48504 * 109.46852 * 209.99866 * 24 22 20 27 27 H 1.48504 * 109.47021 * 329.99095 * 24 22 20 28 28 H 1.09004 * 109.47067 * 300.00226 * 1 2 3 29 29 H 1.09002 * 109.47404 * 59.99560 * 1 2 3 30 30 H 1.08998 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46750 * 240.00442 * 2 1 3 32 32 H 1.09002 * 109.46833 * 299.99927 * 3 2 1 33 33 H 1.09000 * 109.46893 * 59.99932 * 3 2 1 34 34 H 1.08997 * 109.47044 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47215 * 299.99794 * 9 7 5 36 36 H 1.08997 * 109.47498 * 59.99817 * 9 7 5 37 37 H 1.09004 * 109.47547 * 179.97438 * 9 7 5 38 38 H 0.96999 * 119.99681 * 25.00603 * 10 7 5 39 39 H 1.08990 * 109.47195 * 60.00231 * 13 11 10 40 40 H 1.09001 * 109.47170 * 299.99896 * 13 11 10 41 41 H 1.08004 * 119.87777 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.75152 * 179.70481 * 16 15 14 43 43 H 1.08004 * 119.87985 * 180.29954 * 17 16 15 44 44 H 1.08002 * 120.12910 * 179.74432 * 18 17 16 45 45 H 0.97001 * 120.00439 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 3.1936 -1.3169 1.0851 6 8 3.8015 -1.2996 0.0410 7 6 3.7594 -2.0496 2.2743 8 1 3.0663 -2.8324 2.5822 9 6 3.9642 -1.0667 3.4287 10 7 5.0448 -2.6514 1.9108 11 6 5.4965 -3.7309 2.5793 12 8 4.8392 -4.2040 3.4821 13 6 6.8190 -4.3495 2.2058 14 6 7.0895 -5.5335 3.0979 15 6 7.8541 -5.3833 4.2325 16 6 8.1096 -6.4719 5.0516 17 6 7.5900 -7.7204 4.7453 18 6 6.8229 -7.8939 3.6162 19 6 6.5618 -6.7970 2.7741 20 6 5.7746 -6.9633 1.6115 21 1 5.2294 -6.1247 1.2040 22 6 5.7017 -8.2144 0.9888 23 7 6.5857 -9.1371 1.2691 24 14 4.3422 -8.5669 -0.2430 25 1 4.7991 -8.1923 -1.6053 26 1 4.0100 -10.0140 -0.2127 27 1 3.1367 -7.7748 0.1101 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 4.6574 -0.2839 3.1208 36 1 3.0077 -0.6193 3.6990 37 1 4.3730 -1.5967 4.2890 38 1 5.5708 -2.2727 1.1891 39 1 7.6125 -3.6126 2.3289 40 1 6.7860 -4.6778 1.1669 41 1 8.2602 -4.4144 4.4832 42 1 8.7146 -6.3459 5.9373 43 1 7.7914 -8.5607 5.3932 44 1 6.4225 -8.8681 3.3773 45 1 6.5350 -10.0044 0.8378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837028315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:50 Heat of formation + Delta-G solvation = -135.249889 kcal Electronic energy + Delta-G solvation = -26751.786688 eV Core-core repulsion = 22925.857520 eV Total energy + Delta-G solvation = -3825.929168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.98817 -40.74233 -39.18718 -38.09751 -36.12639 -35.49693 -34.21916 -33.54750 -31.75474 -31.30005 -28.42911 -28.20896 -26.89421 -26.10268 -23.35704 -22.80100 -22.03913 -21.42677 -21.11960 -19.21444 -18.95665 -18.26744 -17.60768 -17.22593 -17.19912 -16.44001 -16.27692 -16.12437 -15.45746 -15.34646 -15.13185 -14.81665 -14.54033 -14.40642 -14.33491 -13.81382 -13.53149 -13.37887 -13.34898 -13.22400 -13.16530 -12.90588 -12.81165 -12.76122 -12.75243 -12.59676 -12.49635 -12.13528 -11.94032 -11.67667 -11.48369 -11.31142 -11.21080 -11.02646 -10.85678 -10.26486 -9.21192 -9.15449 -8.60071 -6.29280 0.94952 0.97723 1.11484 1.32204 1.33918 1.44842 1.52414 1.78195 2.18688 2.32019 2.78548 3.40977 3.75184 3.78641 3.90101 3.93235 3.99216 4.12275 4.16429 4.41559 4.43955 4.61841 4.62976 4.67553 4.72267 4.75189 4.75649 4.79813 4.82308 4.83037 5.07222 5.10412 5.14894 5.20315 5.20978 5.32667 5.38399 5.39525 5.56001 5.78311 6.04883 6.17509 6.23236 6.43122 6.48057 6.55516 6.75066 6.99647 7.12068 7.31511 8.36456 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.003579 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.222621 B = 7822.566483 C = 9395.508318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 C -0.165 4.165 4 O -0.347 6.347 5 C 0.471 3.529 6 O -0.524 6.524 7 C 0.149 3.851 8 H 0.110 0.890 9 C -0.146 4.146 10 N -0.718 5.718 11 C 0.527 3.473 12 O -0.561 6.561 13 C -0.069 4.069 14 C -0.187 4.187 15 C -0.089 4.089 16 C -0.241 4.241 17 C -0.116 4.116 18 C -0.193 4.193 19 C 0.096 3.904 20 C -0.484 4.484 21 H 0.068 0.932 22 C 0.039 3.961 23 N -0.825 5.825 24 Si 0.967 3.033 25 H -0.258 1.258 26 H -0.265 1.265 27 H -0.270 1.270 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.415 0.585 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 19.263 -3.324 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.222 4.222 4 O -0.263 6.263 5 C 0.314 3.686 6 O -0.413 6.413 7 C 0.042 3.958 8 H 0.127 0.873 9 C -0.204 4.204 10 N -0.375 5.375 11 C 0.315 3.685 12 O -0.438 6.438 13 C -0.108 4.108 14 C -0.189 4.189 15 C -0.107 4.107 16 C -0.260 4.260 17 C -0.135 4.135 18 C -0.213 4.213 19 C 0.094 3.906 20 C -0.514 4.514 21 H 0.086 0.914 22 C -0.176 4.176 23 N -0.452 5.452 24 Si 0.789 3.211 25 H -0.182 1.182 26 H -0.189 1.189 27 H -0.194 1.194 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.135 0.865 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.835 18.719 -3.085 20.928 hybrid contribution -0.172 -0.660 -0.988 1.201 sum -9.007 18.059 -4.073 20.588 Atomic orbital electron populations 1.21925 0.90252 1.03413 1.04693 1.23122 0.96643 0.93285 0.85607 1.22200 1.01217 0.94105 1.04666 1.86552 1.35144 1.62219 1.42368 1.23640 0.79746 0.76025 0.89231 1.90643 1.60193 1.59310 1.31145 1.20394 0.87379 0.96768 0.91212 0.87255 1.22049 1.04549 0.97960 0.95891 1.45844 1.20954 1.31454 1.39214 1.21121 0.88236 0.78185 0.80944 1.90672 1.59216 1.62155 1.31771 1.20275 0.93741 0.95974 1.00844 1.19495 1.05409 0.94448 0.99548 1.20745 0.98042 0.97858 0.94053 1.20730 1.09074 0.93359 1.02854 1.20955 0.98556 0.97134 0.96835 1.21293 1.04664 0.99368 0.95964 1.17717 0.89587 0.91427 0.91859 1.19601 1.26293 0.96051 1.09466 0.91351 1.26603 0.97055 0.95206 0.98738 1.69872 1.31260 1.05702 1.38328 0.85435 0.78715 0.78432 0.78562 1.18235 1.18944 1.19397 0.90453 0.88082 0.92287 0.91052 0.88611 0.90412 0.93382 0.90606 0.88514 0.91564 0.74707 0.86545 0.88709 0.86275 0.86561 0.87665 0.88598 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.57 71.98 0.69 -1.03 16 2 C 0.07 1.16 3.18 30.60 0.10 1.25 16 3 C -0.16 -2.17 9.55 71.98 0.69 -1.48 16 4 O -0.35 -7.52 9.78 -51.36 -0.50 -8.02 16 5 C 0.47 12.02 7.30 71.24 0.52 12.54 16 6 O -0.52 -15.43 15.06 21.97 0.33 -15.10 16 7 C 0.15 3.97 3.09 44.24 0.14 4.11 16 8 H 0.11 3.30 7.58 -2.39 -0.02 3.28 16 9 C -0.15 -3.08 9.42 71.98 0.68 -2.40 16 10 N -0.72 -21.48 4.95 -446.10 -2.21 -23.69 16 11 C 0.53 20.21 7.43 87.66 0.65 20.86 16 12 O -0.56 -26.31 15.70 -3.04 -0.05 -26.36 16 13 C -0.07 -2.66 5.18 29.10 0.15 -2.51 16 14 C -0.19 -9.01 4.43 -19.40 -0.09 -9.09 16 15 C -0.09 -3.96 9.66 22.22 0.21 -3.75 16 16 C -0.24 -10.90 10.05 22.46 0.23 -10.68 16 17 C -0.12 -5.75 10.02 22.22 0.22 -5.52 16 18 C -0.19 -10.77 8.68 22.73 0.20 -10.57 16 19 C 0.10 5.33 5.56 -21.29 -0.12 5.21 16 20 C -0.48 -26.65 8.14 23.46 0.19 -26.46 16 21 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 22 C 0.04 2.01 5.16 85.26 0.44 2.45 16 23 N -0.83 -44.40 10.97 21.82 0.24 -44.16 16 24 Si 0.97 40.22 29.59 68.60 2.03 42.25 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 28 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.44 7.16 -2.39 -0.02 1.42 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.64 8.11 -2.39 -0.02 1.62 16 37 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.42 10.88 7.79 -92.71 -0.72 10.16 16 39 H 0.12 3.53 8.05 -2.39 -0.02 3.51 16 40 H 0.09 3.74 7.06 -2.39 -0.02 3.72 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 44 H 0.10 5.60 6.22 -2.91 -0.02 5.58 16 45 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 Total: -1.00 -69.82 380.04 5.01 -64.81 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: 0.28 Total: 37.35 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 4.90 Total: -27.08 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -1.97 Total: -67.85 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.22 Total: -49.48 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -69.82 5.01 -64.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837028315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.438 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds