Wall clock time and date at job start Tue Mar 31 2020 13:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47434 * 2 1 4 4 C 1.42897 * 113.99842 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.80629 * 32.17595 * 4 3 2 6 6 C 1.54996 * 110.90934 * 268.54764 * 4 3 2 7 7 O 1.44383 * 103.49163 * 204.78342 * 6 4 3 8 8 C 1.43745 * 106.97615 * 40.05553 * 7 6 4 9 9 C 1.54099 * 107.29560 * 333.49025 * 8 7 6 10 10 H 1.09001 * 110.48542 * 120.70286 * 9 8 7 11 11 N 1.46499 * 110.48983 * 243.35369 * 9 8 7 12 12 C 1.34774 * 120.00117 * 269.76909 * 11 9 8 13 13 O 1.21284 * 119.99649 * 359.97438 * 12 11 9 14 14 C 1.50692 * 120.00342 * 179.97438 * 12 11 9 15 15 C 1.50700 * 109.47523 * 179.97438 * 14 12 11 16 16 C 1.37640 * 120.12647 * 264.73408 * 15 14 12 17 17 C 1.38608 * 120.24665 * 179.72290 * 16 15 14 18 18 C 1.38657 * 120.50293 * 0.54276 * 17 16 15 19 19 C 1.37600 * 120.24664 * 359.73514 * 18 17 16 20 20 C 1.40698 * 120.12906 * 84.99528 * 15 14 12 21 21 C 1.41394 * 120.24213 * 359.97438 * 20 15 14 22 22 H 1.08002 * 120.00184 * 334.07980 * 21 20 15 23 23 C 1.39942 * 120.00013 * 154.07974 * 21 20 15 24 24 N 1.30825 * 120.00377 * 343.62230 * 23 21 20 25 25 Si 1.86799 * 119.99976 * 163.62135 * 23 21 20 26 26 H 1.48507 * 109.47148 * 90.00355 * 25 23 21 27 27 H 1.48508 * 109.47228 * 210.00083 * 25 23 21 28 28 H 1.48497 * 109.47384 * 330.00213 * 25 23 21 29 29 H 1.08993 * 109.47518 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46841 * 299.99805 * 1 2 3 31 31 H 1.08994 * 109.47271 * 59.99670 * 1 2 3 32 32 H 1.09004 * 109.47224 * 120.00178 * 2 1 3 33 33 H 1.09004 * 109.46841 * 240.00195 * 2 1 3 34 34 H 1.09004 * 110.61797 * 323.27843 * 6 4 3 35 35 H 1.08997 * 110.61968 * 86.27556 * 6 4 3 36 36 H 1.08995 * 109.87683 * 92.91341 * 8 7 6 37 37 H 1.08998 * 109.87791 * 213.91526 * 8 7 6 38 38 H 0.97000 * 120.00309 * 89.76006 * 11 9 8 39 39 H 1.09001 * 109.47116 * 300.00089 * 14 12 11 40 40 H 1.09004 * 109.46971 * 59.99727 * 14 12 11 41 41 H 1.07999 * 119.87957 * 359.96255 * 16 15 14 42 42 H 1.08003 * 119.75508 * 180.29329 * 17 16 15 43 43 H 1.08004 * 119.87623 * 179.74718 * 18 17 16 44 44 H 1.08002 * 120.12525 * 180.02562 * 19 18 17 45 45 H 0.96994 * 120.00279 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8847 0.6308 -0.5435 6 6 3.9801 1.5400 1.4466 7 8 5.2408 2.2264 1.2911 8 6 5.0353 3.2666 0.3205 9 6 3.8773 2.8191 -0.5925 10 1 3.0601 3.5393 -0.5528 11 7 4.3464 2.6492 -1.9699 12 6 4.3033 3.6865 -2.8292 13 8 3.8757 4.7606 -2.4623 14 6 4.7864 3.5120 -4.2459 15 6 4.6314 4.8114 -4.9933 16 6 3.5100 5.0389 -5.7583 17 6 3.3622 6.2354 -6.4421 18 6 4.3448 7.2113 -6.3734 19 6 5.4768 7.0033 -5.6194 20 6 5.6350 5.7945 -4.9162 21 6 6.7936 5.5699 -4.1375 22 1 6.7572 4.8905 -3.2987 23 6 7.9875 6.2280 -4.4535 24 7 8.1349 6.7885 -5.6264 25 14 9.3709 6.3061 -3.2007 26 1 10.2627 5.1313 -3.3741 27 1 10.1510 7.5537 -3.4017 28 1 8.7989 6.2954 -1.8303 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.3060 2.1148 2.0817 35 1 4.1346 0.5410 1.8543 36 1 4.7721 4.1966 0.8241 37 1 5.9414 3.4079 -0.2687 38 1 4.6882 1.7902 -2.2634 39 1 5.8365 3.2199 -4.2383 40 1 4.1975 2.7379 -4.7378 41 1 2.7406 4.2838 -5.8229 42 1 2.4769 6.4074 -7.0362 43 1 4.2211 8.1383 -6.9136 44 1 6.2408 7.7649 -5.5669 45 1 8.9622 7.2449 -5.8453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837092076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:35 Heat of formation + Delta-G solvation = -131.890886 kcal Electronic energy + Delta-G solvation = -27023.292637 eV Core-core repulsion = 23197.509126 eV Total energy + Delta-G solvation = -3825.783511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43997 -40.26234 -39.01608 -38.36537 -35.55898 -35.48456 -33.50134 -32.51935 -31.35079 -30.57875 -29.57528 -28.22659 -26.82044 -24.28925 -23.61513 -22.83940 -22.68251 -21.84834 -20.97933 -19.07824 -18.55892 -18.12432 -17.51663 -17.28514 -17.00939 -16.54098 -16.33108 -16.09282 -15.89605 -15.66046 -15.28882 -14.99648 -14.80295 -14.45141 -14.36050 -13.86203 -13.74096 -13.49797 -13.36554 -13.19004 -12.92769 -12.89099 -12.73813 -12.61236 -12.50339 -12.45738 -12.27896 -12.13032 -11.87039 -11.31606 -11.21325 -11.06606 -11.01271 -10.82100 -10.64582 -9.99562 -9.22004 -9.15602 -8.59087 -6.28444 0.99892 1.13650 1.36485 1.47186 1.54292 1.77971 2.10198 2.20225 2.40982 2.79242 3.09117 3.28336 3.65633 3.76187 3.80682 4.00852 4.10823 4.15058 4.20272 4.31851 4.39770 4.42413 4.50519 4.61708 4.61891 4.65449 4.69511 4.71441 4.73174 4.81456 4.88537 5.03653 5.07438 5.20817 5.27913 5.37394 5.45002 5.55754 5.61656 5.78336 6.04579 6.17326 6.17819 6.22357 6.42708 6.59008 6.75187 7.00064 7.12251 7.38953 8.37510 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.003882 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.749465 B = 7211.873326 C = 8964.292465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.391 6.391 4 C 0.063 3.937 5 H 0.108 0.892 6 C 0.027 3.973 7 O -0.381 6.381 8 C 0.041 3.959 9 C 0.115 3.885 10 H 0.086 0.914 11 N -0.714 5.714 12 C 0.520 3.480 13 O -0.569 6.569 14 C -0.068 4.068 15 C -0.188 4.188 16 C -0.091 4.091 17 C -0.243 4.243 18 C -0.117 4.117 19 C -0.195 4.195 20 C 0.097 3.903 21 C -0.482 4.482 22 H 0.073 0.927 23 C 0.037 3.963 24 N -0.826 5.826 25 Si 0.968 3.032 26 H -0.254 1.254 27 H -0.269 1.269 28 H -0.267 1.267 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 -16.804 10.908 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.311 6.311 4 C 0.004 3.996 5 H 0.126 0.874 6 C -0.050 4.050 7 O -0.300 6.300 8 C -0.037 4.037 9 C 0.009 3.991 10 H 0.104 0.896 11 N -0.369 5.369 12 C 0.309 3.691 13 O -0.447 6.447 14 C -0.108 4.108 15 C -0.190 4.190 16 C -0.109 4.109 17 C -0.262 4.262 18 C -0.136 4.136 19 C -0.214 4.214 20 C 0.095 3.905 21 C -0.512 4.512 22 H 0.091 0.909 23 C -0.177 4.177 24 N -0.453 5.453 25 Si 0.790 3.210 26 H -0.179 1.179 27 H -0.194 1.194 28 H -0.191 1.191 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.253 0.747 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.398 -15.803 11.118 20.690 hybrid contribution 0.789 0.323 -0.030 0.853 sum -6.609 -15.480 11.088 20.156 Atomic orbital electron populations 1.21781 0.93198 1.03483 1.02476 1.22823 0.96188 0.82195 1.01664 1.87969 1.19235 1.28908 1.94964 1.23790 0.82626 0.96594 0.96637 0.87449 1.24161 0.85325 0.99588 0.95914 1.88913 1.31938 1.47911 1.61215 1.23500 0.98775 0.91235 0.90174 1.22114 0.96414 0.98326 0.82255 0.89551 1.45862 1.66245 1.14603 1.10193 1.21216 0.76479 0.83246 0.88197 1.90677 1.46811 1.27978 1.79205 1.20281 1.03464 0.96952 0.90071 1.19527 0.98189 0.96352 1.04902 1.20739 0.96224 0.96970 0.97006 1.20711 1.00704 0.96445 1.08361 1.20947 0.94744 0.98611 0.99280 1.21305 0.97930 0.98388 1.03790 1.17722 0.92254 0.90288 0.90244 1.19616 0.94319 1.24510 1.12734 0.90927 1.26649 1.02025 0.92542 0.96531 1.69879 1.27413 1.27477 1.20503 0.85410 0.77503 0.79194 0.78917 1.17876 1.19379 1.19146 0.88778 0.92229 0.93046 0.91216 0.92058 0.90932 0.85434 0.91850 0.89788 0.74680 0.88158 0.86779 0.86577 0.86769 0.87766 0.88601 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.05 0.62 6.54 71.98 0.47 1.09 16 3 O -0.39 -8.01 10.11 -148.98 -1.51 -9.51 16 4 C 0.06 1.19 3.29 31.90 0.10 1.29 16 5 H 0.11 1.52 7.52 -2.38 -0.02 1.50 16 6 C 0.03 0.48 7.45 72.66 0.54 1.02 16 7 O -0.38 -9.40 11.52 -148.98 -1.72 -11.12 16 8 C 0.04 1.15 7.50 72.35 0.54 1.69 16 9 C 0.12 3.09 3.18 45.98 0.15 3.24 16 10 H 0.09 2.85 7.50 -2.39 -0.02 2.83 16 11 N -0.71 -19.64 5.03 -437.85 -2.20 -21.85 16 12 C 0.52 19.72 7.46 87.65 0.65 20.37 16 13 O -0.57 -27.59 15.68 -3.04 -0.05 -27.64 16 14 C -0.07 -2.56 5.18 29.10 0.15 -2.40 16 15 C -0.19 -9.03 4.43 -19.40 -0.09 -9.11 16 16 C -0.09 -4.13 9.66 22.22 0.21 -3.92 16 17 C -0.24 -11.19 10.05 22.46 0.23 -10.96 16 18 C -0.12 -5.87 10.02 22.22 0.22 -5.64 16 19 C -0.19 -10.88 8.68 22.73 0.20 -10.69 16 20 C 0.10 5.35 5.56 -21.29 -0.12 5.23 16 21 C -0.48 -26.04 8.14 23.46 0.19 -25.85 16 22 H 0.07 3.79 6.68 -2.91 -0.02 3.77 16 23 C 0.04 1.90 5.16 85.26 0.44 2.34 16 24 N -0.83 -44.10 10.97 21.83 0.24 -43.87 16 25 Si 0.97 39.37 29.59 68.60 2.03 41.40 16 26 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 27 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.68 8.11 -2.38 -0.02 0.66 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.55 7.94 -2.39 -0.02 2.53 16 38 H 0.42 8.23 8.40 -92.71 -0.78 7.45 16 39 H 0.10 3.70 7.06 -2.39 -0.02 3.68 16 40 H 0.11 3.34 8.05 -2.38 -0.02 3.32 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 43 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.10 5.61 6.22 -2.91 -0.02 5.59 16 45 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 Total: -1.00 -71.47 373.73 1.65 -69.81 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.22 Total: 36.21 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 4.64 Total: -33.43 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -1.96 Total: -65.71 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -3.27 Total: -48.27 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -71.47 1.65 -69.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837092076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.078 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds