Wall clock time and date at job start Tue Mar 31 2020 12:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47139 * 2 1 4 4 C 1.46493 * 120.00442 * 270.00391 * 3 2 1 5 5 C 1.52998 * 109.46976 * 276.31074 * 4 3 2 6 6 C 1.34775 * 119.99516 * 90.00427 * 3 2 1 7 7 O 1.21278 * 120.00503 * 5.43231 * 6 3 2 8 8 C 1.50708 * 119.99751 * 185.43920 * 6 3 2 9 9 H 1.08991 * 109.47231 * 49.41185 * 8 6 3 10 10 C 1.52994 * 109.46852 * 289.40766 * 8 6 3 11 11 O 1.45207 * 109.47080 * 169.41288 * 8 6 3 12 12 C 1.34800 * 116.99716 * 210.00180 * 11 8 6 13 13 O 1.21527 * 120.00165 * 359.97438 * 12 11 8 14 14 C 1.47287 * 119.99979 * 180.02562 * 12 11 8 15 15 C 1.39290 * 120.28686 * 354.65249 * 14 12 11 16 16 C 1.38210 * 120.08752 * 180.28270 * 15 14 12 17 17 C 1.38835 * 120.67830 * 359.71574 * 16 15 14 18 18 C 1.37600 * 120.58782 * 359.97438 * 17 16 15 19 19 C 1.40708 * 119.88119 * 0.02562 * 18 17 16 20 20 C 1.40866 * 120.32559 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99725 * 129.83582 * 20 19 18 22 22 C 1.40286 * 120.00016 * 309.82908 * 20 19 18 23 23 N 1.30613 * 120.00399 * 3.06761 * 22 20 19 24 24 Si 1.86811 * 119.99973 * 183.06605 * 22 20 19 25 25 H 1.48497 * 109.47145 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.46941 * 300.00136 * 24 22 20 27 27 H 1.48497 * 109.46876 * 60.00137 * 24 22 20 28 28 H 1.09005 * 109.47162 * 299.99189 * 1 2 3 29 29 H 1.09002 * 109.47541 * 59.99672 * 1 2 3 30 30 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46722 * 240.00203 * 2 1 3 32 32 H 1.08994 * 109.47483 * 120.00685 * 2 1 3 33 33 H 1.08997 * 109.47412 * 36.30954 * 4 3 2 34 34 H 1.09005 * 109.47417 * 156.31045 * 4 3 2 35 35 H 1.09005 * 109.46857 * 186.75937 * 5 4 3 36 36 H 1.08996 * 109.47567 * 306.75325 * 5 4 3 37 37 H 1.08997 * 109.47528 * 66.75948 * 5 4 3 38 38 H 1.09004 * 109.47709 * 309.22841 * 10 8 6 39 39 H 1.09005 * 109.47340 * 69.22380 * 10 8 6 40 40 H 1.09002 * 109.47548 * 189.22789 * 10 8 6 41 41 H 1.08002 * 119.96072 * 359.97438 * 15 14 12 42 42 H 1.07994 * 119.66165 * 179.73849 * 16 15 14 43 43 H 1.08004 * 119.70358 * 180.02562 * 17 16 15 44 44 H 1.07993 * 120.06000 * 180.02562 * 18 17 16 45 45 H 0.97003 * 119.99648 * 354.27342 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6534 1.7050 -1.7896 6 6 2.2430 2.0164 1.1672 7 8 2.1360 1.4154 2.2152 8 6 2.6270 3.4737 1.1702 9 1 1.9355 4.0330 0.5402 10 6 4.0493 3.6274 0.6279 11 8 2.5685 3.9869 2.5274 12 6 2.2645 5.2918 2.6756 13 8 2.0546 5.9817 1.6974 14 6 2.1878 5.8817 4.0230 15 6 2.3181 5.0753 5.1513 16 6 2.2396 5.6323 6.4137 17 6 2.0369 6.9963 6.5749 18 6 1.9107 7.8196 5.4796 19 6 1.9868 7.2781 4.1831 20 6 1.8584 8.1123 3.0553 21 1 2.5889 8.0633 2.2615 22 6 0.7814 9.0066 2.9632 23 7 -0.0688 9.1088 3.9495 24 14 0.5632 10.0512 1.4300 25 1 -0.6409 10.9070 1.5813 26 1 1.7599 10.9102 1.2419 27 1 0.3976 9.1673 0.2483 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5102 1.7700 -1.9973 34 1 2.2054 3.1492 -1.1127 35 1 3.8833 2.3085 -2.6678 36 1 4.3943 1.8961 -1.0134 37 1 3.6736 0.6490 -2.0590 38 1 4.7147 2.9426 1.1537 39 1 4.0589 3.3969 -0.4374 40 1 4.3879 4.6521 0.7810 41 1 2.4757 4.0127 5.0396 42 1 2.3374 5.0001 7.2838 43 1 1.9785 7.4149 7.5688 44 1 1.7537 8.8795 5.6148 45 1 -0.0047 8.5090 4.7092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855396815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:15 Heat of formation + Delta-G solvation = -101.215558 kcal Electronic energy + Delta-G solvation = -27452.034128 eV Core-core repulsion = 23627.580799 eV Total energy + Delta-G solvation = -3824.453329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.49255 -39.26612 -37.58024 -36.34332 -35.47142 -33.84545 -33.05118 -31.11554 -30.07737 -29.69448 -29.40050 -25.52728 -24.94028 -23.77957 -23.43447 -22.18390 -20.99210 -19.95646 -18.95251 -18.07131 -17.37874 -16.98528 -16.35968 -15.83768 -15.41935 -14.80208 -14.70539 -14.49240 -14.29813 -14.06289 -13.94686 -13.79149 -13.12950 -13.03391 -12.91077 -12.78395 -12.59031 -12.47296 -12.24630 -12.17920 -11.95680 -11.64125 -11.51552 -11.23978 -11.16262 -11.04248 -10.98912 -10.80945 -10.34243 -10.29849 -10.19528 -9.65214 -9.47781 -9.31946 -8.88433 -8.84353 -7.94243 -7.54475 -7.06405 -4.51401 1.97231 2.51971 2.60022 2.65745 3.21087 3.30141 3.44234 3.54681 3.68610 4.09515 4.35029 4.60032 4.68062 4.83579 4.88716 4.99260 5.03995 5.10734 5.15226 5.22772 5.26952 5.35400 5.41901 5.49688 5.57827 5.69913 5.78534 5.81842 5.92860 5.97523 6.02345 6.12948 6.15430 6.32837 6.41361 6.66068 6.80945 7.05414 7.17816 7.24748 7.37316 7.61930 7.67534 7.80319 8.02451 8.11480 8.15125 8.56390 8.83395 8.89927 10.20909 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.003984 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.252552 B = 7025.612888 C = 8156.425292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.614 5.614 4 C 0.096 3.904 5 C -0.181 4.181 6 C 0.522 3.478 7 O -0.514 6.514 8 C 0.072 3.928 9 H 0.105 0.895 10 C -0.174 4.174 11 O -0.341 6.341 12 C 0.504 3.496 13 O -0.502 6.502 14 C -0.229 4.229 15 C -0.034 4.034 16 C -0.239 4.239 17 C -0.074 4.074 18 C -0.189 4.189 19 C 0.134 3.866 20 C -0.484 4.484 21 H 0.086 0.914 22 C 0.032 3.968 23 N -0.823 5.823 24 Si 1.078 2.922 25 H -0.276 1.276 26 H -0.277 1.277 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -12.620 -10.707 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.350 5.350 4 C -0.027 4.027 5 C -0.239 4.239 6 C 0.309 3.691 7 O -0.388 6.388 8 C 0.012 3.988 9 H 0.122 0.878 10 C -0.232 4.232 11 O -0.259 6.259 12 C 0.353 3.647 13 O -0.391 6.391 14 C -0.232 4.232 15 C -0.052 4.052 16 C -0.258 4.258 17 C -0.093 4.093 18 C -0.208 4.208 19 C 0.130 3.870 20 C -0.513 4.513 21 H 0.104 0.896 22 C -0.185 4.185 23 N -0.450 5.450 24 Si 0.902 3.098 25 H -0.201 1.201 26 H -0.202 1.202 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.130 0.870 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.001 -11.531 -11.068 16.262 hybrid contribution 0.870 -1.323 0.587 1.689 sum 3.871 -12.854 -10.481 17.031 Atomic orbital electron populations 1.22151 0.95853 1.02192 1.02567 1.21390 0.94356 0.82059 1.03146 1.47927 1.66948 1.14453 1.05722 1.21731 0.97477 0.98163 0.85340 1.22431 0.97195 1.02265 1.01972 1.20392 0.76630 0.88575 0.83536 1.90706 1.49756 1.67357 1.31001 1.22155 0.99666 0.91629 0.85319 0.87774 1.22475 0.94480 1.04340 1.01873 1.86755 1.82366 1.28763 1.28024 1.21430 0.73704 0.78482 0.91066 1.90773 1.46903 1.60563 1.40815 1.19017 1.22634 0.93598 0.87906 1.21064 0.93723 0.98210 0.92212 1.20480 1.14356 0.95051 0.95904 1.20922 0.97132 0.93816 0.97450 1.21380 1.08367 0.98820 0.92191 1.17567 0.86780 0.89378 0.93291 1.20612 1.10031 1.16631 1.04062 0.89587 1.27080 0.92618 0.96123 1.02723 1.70390 1.34680 1.32750 1.07202 0.83439 0.77112 0.75642 0.73600 1.20078 1.20229 1.19942 0.92089 0.92539 0.91551 0.90565 0.89721 0.90150 0.89522 0.91066 0.91207 0.92226 0.91446 0.89569 0.90406 0.87167 0.88112 0.88226 0.87026 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 2 C 0.11 1.11 6.19 -4.04 -0.03 1.09 16 3 N -0.61 -7.18 2.47 -173.70 -0.43 -7.61 16 4 C 0.10 0.82 5.59 -4.05 -0.02 0.80 16 5 C -0.18 -1.26 9.19 37.16 0.34 -0.92 16 6 C 0.52 8.39 7.03 -10.98 -0.08 8.32 16 7 O -0.51 -10.19 16.09 -13.86 -0.22 -10.41 16 8 C 0.07 1.21 2.15 -27.88 -0.06 1.15 16 9 H 0.10 1.76 6.09 -51.93 -0.32 1.44 16 10 C -0.17 -2.37 8.52 37.15 0.32 -2.05 16 11 O -0.34 -7.33 8.70 -47.38 -0.41 -7.74 16 12 C 0.50 12.22 7.82 34.41 0.27 12.48 16 13 O -0.50 -12.77 13.23 -19.28 -0.26 -13.03 16 14 C -0.23 -5.78 5.92 -104.39 -0.62 -6.40 16 15 C -0.03 -0.77 9.60 -39.20 -0.38 -1.14 16 16 C -0.24 -5.08 10.03 -39.37 -0.39 -5.48 16 17 C -0.07 -1.61 10.01 -39.59 -0.40 -2.01 16 18 C -0.19 -4.62 7.63 -38.88 -0.30 -4.92 16 19 C 0.13 3.55 5.13 -106.53 -0.55 3.00 16 20 C -0.48 -13.21 6.98 -37.82 -0.26 -13.48 16 21 H 0.09 2.38 6.88 -52.49 -0.36 2.02 16 22 C 0.03 0.85 5.41 -17.30 -0.09 0.76 16 23 N -0.82 -22.54 13.06 55.56 0.73 -21.81 16 24 Si 1.08 23.03 29.94 -169.99 -5.09 17.94 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.08 0.97 7.35 -51.93 -0.38 0.58 16 33 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 34 H 0.09 0.80 5.33 -51.93 -0.28 0.52 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.56 5.90 -51.93 -0.31 0.26 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.09 0.88 3.77 -51.93 -0.20 0.68 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.11 2.36 7.61 -52.49 -0.40 1.96 16 42 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 44 H 0.11 2.75 7.35 -52.49 -0.39 2.37 16 45 H 0.30 8.16 5.71 -40.82 -0.23 7.93 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -32.28 367.52 -8.31 -40.58 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.30 Total: 6.57 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.86 Total: -10.03 kcal Atomic # 7 Polarization: -29.72 SS G_CDS: 0.30 Total: -29.42 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.89 Total: -31.18 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.09 Total: 17.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.28 -8.31 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855396815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.631 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds