Wall clock time and date at job start Tue Mar 31 2020 12:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47178 * 2 1 4 4 C 1.35909 * 117.00397 * 179.97438 * 3 2 1 5 5 C 1.38925 * 119.96421 * 359.72871 * 4 3 2 6 6 C 1.38302 * 120.29116 * 179.76323 * 5 4 3 7 7 C 1.37929 * 120.23654 * 0.51127 * 6 5 4 8 8 C 1.39870 * 119.93430 * 359.74526 * 7 6 5 9 9 C 1.47151 * 120.14496 * 180.02562 * 8 7 6 10 10 C 1.34977 * 120.00052 * 222.77280 * 9 8 7 11 11 C 1.46229 * 119.99740 * 10.77588 * 10 9 8 12 12 O 1.21754 * 119.99997 * 6.91763 * 11 10 9 13 13 N 1.34779 * 119.99771 * 186.91483 * 11 10 9 14 14 C 1.36708 * 120.00006 * 0.02562 * 13 11 10 15 15 H 1.08002 * 120.00049 * 322.27407 * 14 13 11 16 16 C 1.39123 * 120.00087 * 142.28446 * 14 13 11 17 17 N 1.31327 * 119.99904 * 161.56235 * 16 14 13 18 18 Si 1.86801 * 119.99992 * 341.55303 * 16 14 13 19 19 H 1.48500 * 109.46780 * 92.02428 * 18 16 14 20 20 H 1.48494 * 109.47043 * 212.02215 * 18 16 14 21 21 H 1.48503 * 109.46908 * 332.02538 * 18 16 14 22 22 C 1.46500 * 120.00013 * 179.97438 * 13 11 10 23 23 C 1.52999 * 109.46924 * 86.44939 * 22 13 11 24 24 O 1.42899 * 109.46937 * 63.54362 * 23 22 13 25 25 C 1.42898 * 114.00150 * 179.97438 * 24 23 22 26 26 C 1.38367 * 119.97423 * 180.02562 * 4 3 2 27 27 H 1.08997 * 109.47049 * 299.99520 * 1 2 3 28 28 H 1.09000 * 109.46841 * 59.99858 * 1 2 3 29 29 H 1.09002 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46978 * 240.00523 * 2 1 3 31 31 H 1.09000 * 109.47715 * 120.00414 * 2 1 3 32 32 H 1.07993 * 119.84948 * 0.02562 * 5 4 3 33 33 H 1.07998 * 119.87478 * 180.26048 * 6 5 4 34 34 H 1.07998 * 120.02607 * 179.76908 * 7 6 5 35 35 H 1.07998 * 120.00313 * 42.77350 * 9 8 7 36 36 H 1.07996 * 119.99918 * 190.77937 * 10 9 8 37 37 H 0.97005 * 119.99732 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.47595 * 206.45340 * 22 13 11 39 39 H 1.09005 * 109.46733 * 326.45731 * 22 13 11 40 40 H 1.09002 * 109.47205 * 183.53871 * 23 22 13 41 41 H 1.08996 * 109.47673 * 303.53905 * 23 22 13 42 42 H 1.08995 * 109.47451 * 299.99929 * 25 24 23 43 43 H 1.08999 * 109.46940 * 59.99990 * 25 24 23 44 44 H 1.09006 * 109.47308 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.11268 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4232 0.0068 6 6 5.5714 0.5966 0.0024 7 6 6.1111 1.8660 0.0025 8 6 5.2687 2.9825 0.0016 9 6 5.8394 4.3388 0.0011 10 6 5.3100 5.2941 0.7942 11 6 4.3325 4.9335 1.8203 12 8 4.0897 3.7617 2.0448 13 7 3.7003 5.8983 2.5174 14 6 3.9726 7.2140 2.2650 15 1 4.9823 7.5225 2.0371 16 6 2.9492 8.1557 2.3019 17 7 3.2351 9.4318 2.4228 18 14 1.1684 7.6051 2.1792 19 1 0.6227 7.3874 3.5430 20 1 0.3730 8.6520 1.4891 21 1 1.0941 6.3381 1.4082 22 6 2.7206 5.5372 3.5450 23 6 3.4401 5.2967 4.8736 24 8 4.0568 6.5104 5.3078 25 6 4.7592 6.3946 6.5468 26 6 3.8819 2.8043 0.0011 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.7834 -0.5734 0.0107 33 1 6.2226 -0.2650 0.0030 34 1 7.1830 1.9974 0.0029 35 1 6.6819 4.5700 -0.6338 36 1 5.6084 6.3247 0.6710 37 1 2.5216 10.0884 2.4482 38 1 2.0017 6.3479 3.6626 39 1 2.1979 4.6287 3.2453 40 1 2.7199 4.9671 5.6224 41 1 4.2025 4.5292 4.7403 42 1 4.0661 6.0880 7.3301 43 1 5.5490 5.6499 6.4485 44 1 5.1988 7.3577 6.8067 45 1 3.2253 3.6617 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861941887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:25 Heat of formation + Delta-G solvation = -44.013129 kcal Electronic energy + Delta-G solvation = -27566.900979 eV Core-core repulsion = 23744.928133 eV Total energy + Delta-G solvation = -3821.972846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.83874 -38.98148 -37.44062 -36.82304 -34.89613 -32.99022 -31.96863 -31.83489 -29.98949 -29.20676 -28.57773 -25.88827 -24.94015 -24.04909 -23.13452 -22.24192 -21.52708 -20.22131 -18.69716 -17.80949 -16.69230 -16.11777 -15.91936 -15.84877 -15.78306 -15.60554 -15.26632 -14.74181 -14.50168 -14.01423 -13.90385 -13.32846 -13.22585 -13.15629 -12.91625 -12.68997 -12.57108 -12.44097 -12.10725 -11.82516 -11.72156 -11.62725 -11.49187 -11.33460 -11.09836 -10.87021 -10.73250 -10.62002 -10.41328 -10.08619 -9.85602 -9.36456 -9.13702 -9.04110 -8.63903 -7.90901 -7.62422 -7.39542 -6.42944 -3.97396 1.31712 1.99708 2.46455 3.08022 3.23904 3.29804 3.49066 4.13706 4.25537 4.31841 4.38985 4.49334 4.92505 4.97526 5.07533 5.17885 5.23390 5.26842 5.44081 5.51293 5.59425 5.65976 5.70108 5.75197 5.76535 5.83002 5.87342 5.92100 5.96689 6.02814 6.04838 6.08132 6.20200 6.33720 6.44970 6.51989 6.71163 6.80062 6.83502 6.98404 7.13809 7.30852 7.36300 7.79942 7.84808 8.10249 8.26801 8.99666 9.38112 9.71358 10.67599 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.004474 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.923540 B = 6257.166239 C = 6742.261187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.318 6.318 4 C 0.109 3.891 5 C -0.209 4.209 6 C -0.103 4.103 7 C -0.145 4.145 8 C -0.006 4.006 9 C -0.097 4.097 10 C -0.137 4.137 11 C 0.485 3.515 12 O -0.586 6.586 13 N -0.437 5.437 14 C -0.327 4.327 15 H 0.105 0.895 16 C 0.071 3.929 17 N -0.855 5.855 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.096 3.904 23 C 0.056 3.944 24 O -0.358 6.358 25 C 0.032 3.968 26 C -0.054 4.054 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.274 0.726 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.081 0.919 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 -13.767 -2.127 13.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.232 6.232 4 C 0.065 3.935 5 C -0.227 4.227 6 C -0.122 4.122 7 C -0.164 4.164 8 C -0.006 4.006 9 C -0.118 4.118 10 C -0.158 4.158 11 C 0.278 3.722 12 O -0.474 6.474 13 N -0.154 5.154 14 C -0.455 4.455 15 H 0.123 0.877 16 C -0.137 4.137 17 N -0.490 5.490 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.027 4.027 23 C -0.022 4.022 24 O -0.276 6.276 25 C -0.065 4.065 26 C -0.073 4.073 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.168 -13.763 -2.065 13.918 hybrid contribution -0.783 -0.368 0.510 1.004 sum -0.950 -14.130 -1.555 14.247 Atomic orbital electron populations 1.21762 0.93239 1.02333 1.03541 1.22642 0.95482 0.82867 1.00807 1.86079 1.19653 1.28188 1.89317 1.18726 0.81731 0.94046 0.99027 1.21072 0.94429 0.97162 1.10083 1.20573 0.94009 0.96768 1.00801 1.21017 0.98897 0.91872 1.04565 1.18601 0.91961 0.92976 0.97103 1.22100 0.98760 0.91445 0.99463 1.23305 0.97056 0.99822 0.95567 1.18328 0.85043 0.85115 0.83738 1.90757 1.68428 1.17941 1.70238 1.43626 1.36067 1.06745 1.28970 1.18990 0.96542 0.80264 1.49690 0.87712 1.25292 0.98629 0.94828 0.94903 1.69690 1.34001 1.01048 1.44288 0.87003 0.85098 0.79281 0.78201 1.20119 1.21542 1.18527 1.21815 0.92618 1.01095 0.87178 1.22834 0.96229 0.87434 0.95673 1.88204 1.69937 1.31987 1.37505 1.22656 0.95321 1.01830 0.86683 1.20366 0.94141 0.94281 0.98527 0.91529 0.91660 0.90789 0.92613 0.92503 0.86669 0.86759 0.86577 0.85461 0.84433 0.91540 0.90588 0.89754 0.94009 0.93151 0.95189 0.94910 0.90067 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.06 0.71 5.46 37.16 0.20 0.92 16 3 O -0.32 -5.53 10.13 -19.46 -0.20 -5.72 16 4 C 0.11 1.99 6.68 -39.28 -0.26 1.72 16 5 C -0.21 -3.25 9.04 -39.30 -0.36 -3.61 16 6 C -0.10 -1.53 10.02 -39.67 -0.40 -1.93 16 7 C -0.15 -2.31 9.79 -39.08 -0.38 -2.69 16 8 C -0.01 -0.11 4.58 -105.08 -0.48 -0.59 16 9 C -0.10 -1.68 9.82 -37.12 -0.36 -2.05 16 10 C -0.14 -2.75 9.19 -37.53 -0.34 -3.10 16 11 C 0.49 11.23 6.55 -13.05 -0.09 11.15 16 12 O -0.59 -14.07 11.70 5.14 0.06 -14.01 16 13 N -0.44 -10.55 2.14 -116.47 -0.25 -10.80 16 14 C -0.33 -8.51 8.61 -15.05 -0.13 -8.63 16 15 H 0.11 2.84 6.84 -52.49 -0.36 2.48 16 16 C 0.07 1.89 5.35 -17.44 -0.09 1.80 16 17 N -0.86 -23.69 13.95 55.50 0.77 -22.91 16 18 Si 0.88 20.76 24.90 -169.99 -4.23 16.52 16 19 H -0.27 -6.29 6.57 56.52 0.37 -5.92 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.10 2.17 4.42 -4.04 -0.02 2.15 16 23 C 0.06 1.14 6.27 37.16 0.23 1.38 16 24 O -0.36 -7.80 10.28 -35.23 -0.36 -8.16 16 25 C 0.03 0.53 11.01 101.05 1.11 1.64 16 26 C -0.05 -1.08 6.50 -38.94 -0.25 -1.33 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.60 7.67 -51.92 -0.40 0.20 16 31 H 0.06 0.67 7.64 -51.93 -0.40 0.27 16 32 H 0.12 1.48 6.28 -52.49 -0.33 1.15 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.14 2.69 6.47 -52.49 -0.34 2.35 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.08 1.78 3.07 -51.93 -0.16 1.63 16 39 H 0.08 1.84 7.53 -51.93 -0.39 1.45 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.12 2.67 6.91 -52.49 -0.36 2.30 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -31.07 367.49 -6.46 -37.52 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.55 Total: 6.35 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.24 Total: -4.33 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.52 Total: -33.71 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.50 Total: -27.90 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.23 Total: 16.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.07 -6.46 -37.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861941887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.489 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds