Wall clock time and date at job start Tue Mar 31 2020 12:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47178 * 2 1 4 4 C 1.35909 * 117.00397 * 179.97438 * 3 2 1 5 5 C 1.38925 * 119.96421 * 359.72871 * 4 3 2 6 6 C 1.38302 * 120.29116 * 179.76323 * 5 4 3 7 7 C 1.37929 * 120.23654 * 0.51127 * 6 5 4 8 8 C 1.39870 * 119.93430 * 359.74526 * 7 6 5 9 9 C 1.47151 * 120.14496 * 180.02562 * 8 7 6 10 10 C 1.34977 * 120.00052 * 222.77280 * 9 8 7 11 11 C 1.46229 * 119.99740 * 10.77588 * 10 9 8 12 12 O 1.21754 * 119.99997 * 6.91763 * 11 10 9 13 13 N 1.34779 * 119.99771 * 186.91483 * 11 10 9 14 14 C 1.36708 * 120.00006 * 0.02562 * 13 11 10 15 15 H 1.08002 * 120.00049 * 322.27407 * 14 13 11 16 16 C 1.39123 * 120.00087 * 142.28446 * 14 13 11 17 17 N 1.31327 * 119.99904 * 161.56235 * 16 14 13 18 18 Si 1.86801 * 119.99992 * 341.55303 * 16 14 13 19 19 H 1.48500 * 109.46780 * 92.02428 * 18 16 14 20 20 H 1.48494 * 109.47043 * 212.02215 * 18 16 14 21 21 H 1.48503 * 109.46908 * 332.02538 * 18 16 14 22 22 C 1.46500 * 120.00013 * 179.97438 * 13 11 10 23 23 C 1.52999 * 109.46924 * 86.44939 * 22 13 11 24 24 O 1.42899 * 109.46937 * 63.54362 * 23 22 13 25 25 C 1.42898 * 114.00150 * 179.97438 * 24 23 22 26 26 C 1.38367 * 119.97423 * 180.02562 * 4 3 2 27 27 H 1.08997 * 109.47049 * 299.99520 * 1 2 3 28 28 H 1.09000 * 109.46841 * 59.99858 * 1 2 3 29 29 H 1.09002 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46978 * 240.00523 * 2 1 3 31 31 H 1.09000 * 109.47715 * 120.00414 * 2 1 3 32 32 H 1.07993 * 119.84948 * 0.02562 * 5 4 3 33 33 H 1.07998 * 119.87478 * 180.26048 * 6 5 4 34 34 H 1.07998 * 120.02607 * 179.76908 * 7 6 5 35 35 H 1.07998 * 120.00313 * 42.77350 * 9 8 7 36 36 H 1.07996 * 119.99918 * 190.77937 * 10 9 8 37 37 H 0.97005 * 119.99732 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.47595 * 206.45340 * 22 13 11 39 39 H 1.09005 * 109.46733 * 326.45731 * 22 13 11 40 40 H 1.09002 * 109.47205 * 183.53871 * 23 22 13 41 41 H 1.08996 * 109.47673 * 303.53905 * 23 22 13 42 42 H 1.08995 * 109.47451 * 299.99929 * 25 24 23 43 43 H 1.08999 * 109.46940 * 59.99990 * 25 24 23 44 44 H 1.09006 * 109.47308 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.11268 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4232 0.0068 6 6 5.5714 0.5966 0.0024 7 6 6.1111 1.8660 0.0025 8 6 5.2687 2.9825 0.0016 9 6 5.8394 4.3388 0.0011 10 6 5.3100 5.2941 0.7942 11 6 4.3325 4.9335 1.8203 12 8 4.0897 3.7617 2.0448 13 7 3.7003 5.8983 2.5174 14 6 3.9726 7.2140 2.2650 15 1 4.9823 7.5225 2.0371 16 6 2.9492 8.1557 2.3019 17 7 3.2351 9.4318 2.4228 18 14 1.1684 7.6051 2.1792 19 1 0.6227 7.3874 3.5430 20 1 0.3730 8.6520 1.4891 21 1 1.0941 6.3381 1.4082 22 6 2.7206 5.5372 3.5450 23 6 3.4401 5.2967 4.8736 24 8 4.0568 6.5104 5.3078 25 6 4.7592 6.3946 6.5468 26 6 3.8819 2.8043 0.0011 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.7834 -0.5734 0.0107 33 1 6.2226 -0.2650 0.0030 34 1 7.1830 1.9974 0.0029 35 1 6.6819 4.5700 -0.6338 36 1 5.6084 6.3247 0.6710 37 1 2.5216 10.0884 2.4482 38 1 2.0017 6.3479 3.6626 39 1 2.1979 4.6287 3.2453 40 1 2.7199 4.9671 5.6224 41 1 4.2025 4.5292 4.7403 42 1 4.0661 6.0880 7.3301 43 1 5.5490 5.6499 6.4485 44 1 5.1988 7.3577 6.8067 45 1 3.2253 3.6617 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861941887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:24 Heat of formation + Delta-G solvation = -63.154903 kcal Electronic energy + Delta-G solvation = -27567.731028 eV Core-core repulsion = 23744.928133 eV Total energy + Delta-G solvation = -3822.802895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25210 -40.56974 -38.88844 -38.25992 -36.67597 -34.49378 -33.90095 -32.84616 -31.55633 -30.49837 -29.98503 -27.30590 -26.82167 -25.41311 -24.47438 -23.60953 -22.85859 -21.71554 -20.40660 -19.26608 -18.47423 -17.66311 -17.57372 -17.18497 -17.02022 -16.97304 -16.64480 -16.34234 -16.15870 -15.63855 -15.40655 -14.83349 -14.77377 -14.44135 -14.26859 -14.17627 -13.98218 -13.67080 -13.53096 -13.35537 -13.19432 -13.11921 -12.86265 -12.64157 -12.51121 -12.41490 -12.34121 -11.95589 -11.73569 -11.68638 -11.57257 -11.07362 -10.75560 -10.56996 -10.38195 -9.71898 -8.97234 -8.90048 -8.44852 -6.01064 -0.10749 0.70055 1.04341 1.18276 1.30367 1.38298 2.18544 2.36556 2.50538 2.67478 2.89944 3.02347 3.19112 3.90049 3.97498 4.00269 4.04330 4.11377 4.17522 4.22254 4.25995 4.33830 4.36496 4.45038 4.50014 4.51581 4.53975 4.57328 4.70339 4.73322 4.80423 4.81516 4.87337 4.90832 5.17089 5.18968 5.31644 5.38801 5.46821 5.52450 5.64069 5.79703 6.02196 6.10808 6.27529 6.36270 6.62718 7.02289 7.48257 7.84767 8.69632 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.004474 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.923540 B = 6257.166239 C = 6742.261187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.348 6.348 4 C 0.093 3.907 5 C -0.204 4.204 6 C -0.097 4.097 7 C -0.143 4.143 8 C -0.035 4.035 9 C -0.053 4.053 10 C -0.183 4.183 11 C 0.489 3.511 12 O -0.595 6.595 13 N -0.455 5.455 14 C -0.318 4.318 15 H 0.083 0.917 16 C 0.033 3.967 17 N -0.896 5.896 18 Si 0.923 3.077 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.091 3.909 23 C 0.064 3.936 24 O -0.398 6.398 25 C 0.027 3.973 26 C -0.085 4.085 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.135 0.865 37 H 0.277 0.723 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.089 0.911 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 -17.181 -2.287 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.263 6.263 4 C 0.049 3.951 5 C -0.222 4.222 6 C -0.114 4.114 7 C -0.161 4.161 8 C -0.035 4.035 9 C -0.073 4.073 10 C -0.204 4.204 11 C 0.283 3.717 12 O -0.482 6.482 13 N -0.174 5.174 14 C -0.446 4.446 15 H 0.100 0.900 16 C -0.170 4.170 17 N -0.534 5.534 18 Si 0.750 3.250 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.032 4.032 23 C -0.014 4.014 24 O -0.317 6.317 25 C -0.069 4.069 26 C -0.104 4.104 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.164 0.836 35 H 0.188 0.812 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.667 -17.202 -2.219 17.357 hybrid contribution -0.943 0.382 0.468 1.120 sum -0.276 -16.820 -1.751 16.913 Atomic orbital electron populations 1.21811 0.91830 1.04222 1.02729 1.23011 0.96706 0.80960 1.02059 1.86056 1.19552 1.31340 1.89353 1.18930 0.82592 0.94281 0.99327 1.21462 0.94739 0.97655 1.08391 1.21098 0.94173 0.97730 0.98436 1.21394 1.00144 0.91466 1.03088 1.18843 0.91793 0.94156 0.98694 1.22618 0.97511 0.90405 0.96736 1.23171 0.99037 1.00609 0.97549 1.18839 0.84467 0.84785 0.83659 1.90739 1.68624 1.18247 1.70639 1.43662 1.37259 1.06140 1.30386 1.18780 0.95573 0.81174 1.49060 0.89989 1.25746 1.01353 0.94797 0.95136 1.69755 1.34893 1.01839 1.46885 0.86250 0.81958 0.78237 0.78542 1.18774 1.21110 1.19729 1.21866 0.92583 1.00473 0.88306 1.22740 0.96467 0.86876 0.95310 1.88139 1.70762 1.32783 1.39974 1.22871 0.95853 1.02790 0.85401 1.20262 0.94690 0.94136 1.01356 0.92792 0.92047 0.87480 0.90632 0.91700 0.83642 0.82641 0.83551 0.81202 0.84746 0.91359 0.91610 0.89809 0.90806 0.93949 0.92605 0.94046 0.89282 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.28 71.98 0.74 -2.05 16 2 C 0.05 1.08 5.46 71.98 0.39 1.48 16 3 O -0.35 -12.08 10.13 -92.53 -0.94 -13.02 16 4 C 0.09 3.33 6.68 22.47 0.15 3.48 16 5 C -0.20 -5.71 9.04 22.45 0.20 -5.51 16 6 C -0.10 -2.43 10.02 22.21 0.22 -2.21 16 7 C -0.14 -4.04 9.79 22.59 0.22 -3.81 16 8 C -0.03 -1.22 4.58 -20.16 -0.09 -1.31 16 9 C -0.05 -1.78 9.82 23.86 0.23 -1.54 16 10 C -0.18 -7.55 9.19 23.60 0.22 -7.33 16 11 C 0.49 23.42 6.55 86.32 0.57 23.98 16 12 O -0.60 -29.23 11.70 -4.52 -0.05 -29.28 16 13 N -0.46 -22.83 2.14 -640.58 -1.37 -24.20 16 14 C -0.32 -17.27 8.61 84.15 0.72 -16.55 16 15 H 0.08 4.72 6.84 -2.91 -0.02 4.70 16 16 C 0.03 1.84 5.35 84.98 0.45 2.29 16 17 N -0.90 -51.48 13.95 21.69 0.30 -51.18 16 18 Si 0.92 44.20 24.90 68.60 1.71 45.91 16 19 H -0.26 -11.85 6.57 99.48 0.65 -11.19 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 22 C 0.09 4.19 4.42 86.38 0.38 4.57 16 23 C 0.06 2.58 6.27 71.98 0.45 3.03 16 24 O -0.40 -17.35 10.28 -148.98 -1.53 -18.88 16 25 C 0.03 0.86 11.01 113.37 1.25 2.11 16 26 C -0.09 -3.44 6.50 22.68 0.15 -3.29 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.42 7.67 -2.38 -0.02 1.40 16 31 H 0.06 1.37 7.64 -2.39 -0.02 1.35 16 32 H 0.15 3.11 6.28 -2.91 -0.02 3.09 16 33 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 35 H 0.17 4.14 8.06 -2.91 -0.02 4.11 16 36 H 0.13 5.54 6.47 -2.91 -0.02 5.52 16 37 H 0.28 14.88 8.31 -92.70 -0.77 14.11 16 38 H 0.07 3.14 3.07 -2.39 -0.01 3.13 16 39 H 0.08 3.77 7.53 -2.38 -0.02 3.75 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 45 H 0.08 3.93 6.91 -2.91 -0.02 3.91 16 Total: -1.00 -71.13 367.49 5.31 -65.82 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.93 Total: 27.49 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 6.26 Total: -2.67 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.07 Total: -75.38 kcal Atomic # 8 Polarization: -58.66 SS G_CDS: -2.52 Total: -61.18 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.71 Total: 45.91 kcal Total: -71.13 5.31 -65.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861941887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.667 kcal (2) G-P(sol) polarization free energy of solvation -71.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds