Wall clock time and date at job start Tue Mar 31 2020 13:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47393 * 2 1 4 4 C 1.42900 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.09008 * 110.88543 * 330.69573 * 4 3 2 6 6 C 1.55155 * 111.00490 * 94.57824 * 4 3 2 7 7 C 1.54331 * 102.93905 * 153.57608 * 6 4 3 8 8 N 1.47021 * 107.27346 * 337.80636 * 7 6 4 9 9 C 1.34772 * 125.64873 * 178.90603 * 8 7 6 10 10 O 1.21278 * 119.99989 * 180.02562 * 9 8 7 11 11 C 1.50700 * 119.99722 * 0.02675 * 9 8 7 12 12 C 1.50711 * 109.46895 * 179.97438 * 11 9 8 13 13 C 1.38299 * 119.92837 * 269.72750 * 12 11 9 14 14 C 1.38104 * 120.06303 * 179.72713 * 13 12 11 15 15 C 1.38876 * 119.93350 * 0.56642 * 14 13 12 16 16 O 1.35747 * 120.07069 * 179.68948 * 15 14 13 17 17 C 1.34834 * 117.00208 * 174.48905 * 16 15 14 18 18 H 1.07997 * 119.99870 * 5.05328 * 17 16 15 19 19 C 1.38656 * 120.00126 * 185.05220 * 17 16 15 20 20 N 1.31556 * 119.99727 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99956 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46973 * 60.00288 * 21 19 17 23 23 H 1.48495 * 109.46824 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47193 * 300.00476 * 21 19 17 25 25 C 1.38884 * 119.86032 * 359.70186 * 15 14 13 26 26 C 1.38101 * 119.93085 * 0.02562 * 25 15 14 27 27 C 1.47469 * 108.72262 * 358.97807 * 8 7 6 28 28 H 1.08997 * 109.47002 * 60.00435 * 1 2 3 29 29 H 1.08999 * 109.47523 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47489 * 300.00684 * 1 2 3 31 31 H 1.09001 * 109.47489 * 239.99316 * 2 1 3 32 32 H 1.09010 * 109.46768 * 119.99359 * 2 1 3 33 33 H 1.08997 * 110.71638 * 271.93824 * 6 4 3 34 34 H 1.08995 * 110.72345 * 35.03617 * 6 4 3 35 35 H 1.09005 * 109.88166 * 97.22507 * 7 6 4 36 36 H 1.08995 * 109.88098 * 218.23045 * 7 6 4 37 37 H 1.09001 * 109.47437 * 299.99143 * 11 9 8 38 38 H 1.08996 * 109.47502 * 60.00064 * 11 9 8 39 39 H 1.07999 * 119.96911 * 359.97438 * 13 12 11 40 40 H 1.08003 * 120.03051 * 180.27244 * 14 13 12 41 41 H 0.97005 * 119.99795 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.03616 * 180.02562 * 25 15 14 43 43 H 1.08002 * 119.96490 * 179.97438 * 26 25 15 44 44 H 1.09004 * 110.34301 * 265.25274 * 27 8 7 45 45 H 1.08990 * 110.40975 * 142.91624 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8886 0.6054 0.4976 6 6 3.9755 1.6195 -1.4446 7 6 5.3010 2.3809 -1.2319 8 7 5.2066 3.0679 0.0645 9 6 6.1710 3.8248 0.6244 10 8 5.9831 4.3458 1.7033 11 6 7.4827 4.0236 -0.0903 12 6 8.3797 4.9036 0.7418 13 6 8.3499 6.2759 0.5725 14 6 9.1665 7.0853 1.3375 15 6 10.0269 6.5191 2.2692 16 8 10.8354 7.3117 3.0181 17 6 11.5614 6.7092 3.9814 18 1 11.5463 5.6335 4.0758 19 6 12.3273 7.4708 4.8508 20 7 12.3460 8.7812 4.7355 21 14 13.3326 6.6362 6.1858 22 1 14.3118 5.7103 5.5622 23 1 14.0565 7.6642 6.9759 24 1 12.4282 5.8707 7.0809 25 6 10.0585 5.1403 2.4328 26 6 9.2353 4.3367 1.6688 27 6 3.8827 2.7904 0.6520 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 4.1589 0.6451 -1.8973 34 1 3.2861 2.2030 -2.0547 35 1 6.1342 1.6783 -1.2194 36 1 5.4424 3.1091 -2.0305 37 1 7.9628 3.0572 -0.2443 38 1 7.3027 4.4978 -1.0550 39 1 7.6843 6.7152 -0.1558 40 1 9.1396 8.1572 1.2079 41 1 12.8816 9.3140 5.3440 42 1 10.7261 4.6970 3.1568 43 1 9.2597 3.2644 1.7954 44 1 3.1840 3.5901 0.4061 45 1 3.9632 2.6747 1.7327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885344488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:09 Heat of formation + Delta-G solvation = -104.558579 kcal Electronic energy + Delta-G solvation = -25657.813215 eV Core-core repulsion = 21833.214921 eV Total energy + Delta-G solvation = -3824.598293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31862 -40.63973 -39.48567 -38.22861 -37.36219 -34.40487 -33.24882 -32.42017 -31.78379 -31.27207 -29.73182 -28.01823 -26.93095 -24.41421 -23.72700 -23.64186 -22.44094 -22.04145 -20.26604 -19.83394 -18.83321 -18.32073 -18.10664 -16.81130 -16.72092 -16.37739 -16.31312 -16.12693 -15.73309 -15.62858 -15.45693 -15.12528 -14.90922 -14.48343 -14.40822 -14.14089 -13.85272 -13.62632 -13.50634 -13.36938 -13.28555 -12.95101 -12.80034 -12.59874 -12.47194 -12.33566 -12.28920 -12.22697 -12.14117 -12.04139 -11.61056 -11.18537 -10.97278 -10.75491 -10.50905 -9.77031 -9.68857 -8.90994 -8.47274 -6.15654 0.60977 0.65486 1.33426 1.44659 1.50365 1.65270 1.84372 2.17717 2.74882 2.84537 3.14691 3.45337 3.52496 3.60813 3.84390 3.95670 4.03939 4.08492 4.18345 4.20789 4.25219 4.29952 4.39763 4.46550 4.52502 4.58119 4.62779 4.67961 4.71420 4.79754 4.83799 4.92058 4.98401 5.06662 5.08354 5.13220 5.14514 5.28212 5.30170 5.31190 5.55996 5.71074 5.77014 6.02468 6.21573 6.24727 6.49152 6.96914 7.19697 7.78125 8.75909 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.002064 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.484250 B =13564.300852 C =14019.238130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.396 6.396 4 C 0.081 3.919 5 H 0.089 0.911 6 C -0.144 4.144 7 C 0.094 3.906 8 N -0.621 5.621 9 C 0.524 3.476 10 O -0.582 6.582 11 C -0.069 4.069 12 C -0.148 4.148 13 C -0.058 4.058 14 C -0.207 4.207 15 C 0.112 3.888 16 O -0.233 6.233 17 C -0.416 4.416 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.254 1.254 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.244 4.244 26 C -0.059 4.059 27 C 0.104 3.896 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.065 0.935 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.197 -22.733 -16.649 34.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.315 6.315 4 C 0.023 3.977 5 H 0.107 0.893 6 C -0.181 4.181 7 C -0.027 4.027 8 N -0.357 5.357 9 C 0.315 3.685 10 O -0.461 6.461 11 C -0.108 4.108 12 C -0.149 4.149 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.062 3.938 16 O -0.140 6.140 17 C -0.492 4.492 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.263 4.263 26 C -0.077 4.077 27 C -0.019 4.019 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.164 0.836 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.157 0.843 44 H 0.083 0.917 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.235 -21.841 -15.977 33.200 hybrid contribution 0.604 0.229 1.131 1.303 sum -18.631 -21.612 -14.846 32.165 Atomic orbital electron populations 1.21778 0.93196 1.03364 1.02593 1.22729 0.96091 0.82436 1.01242 1.87881 1.20051 1.28493 1.95051 1.23131 0.81615 0.96423 0.96565 0.89334 1.23130 0.95921 1.02675 0.96421 1.22349 0.99398 0.96880 0.84074 1.48474 1.14509 1.50308 1.22392 1.21003 0.85545 0.76870 0.85094 1.90759 1.81472 1.49918 1.23957 1.20490 0.89472 1.02140 0.98656 1.19259 1.00625 0.93627 1.01350 1.20877 0.96142 0.93029 0.97538 1.20440 1.01044 1.00097 1.01011 1.19936 0.90622 0.91128 0.92105 1.83936 1.50621 1.36171 1.43285 1.21791 1.24777 0.93431 1.09167 0.88242 1.26629 0.98796 0.96228 1.00514 1.70187 1.40658 1.06239 1.38835 0.84636 0.77651 0.77656 0.76168 1.17832 1.19431 1.18492 1.21237 1.06201 0.92942 1.05955 1.20935 0.93710 0.99612 0.93478 1.22031 0.84449 0.97393 0.98036 0.92065 0.89156 0.92841 0.91465 0.92784 0.87145 0.89596 0.88577 0.88990 0.85197 0.85203 0.83641 0.86964 0.91833 0.86363 0.84300 0.91669 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 71.98 0.74 -0.55 16 2 C 0.05 0.49 6.52 71.98 0.47 0.96 16 3 O -0.40 -6.06 10.15 -148.98 -1.51 -7.57 16 4 C 0.08 1.06 3.51 31.99 0.11 1.18 16 5 H 0.09 0.98 7.86 -2.38 -0.02 0.96 16 6 C -0.14 -1.10 6.69 31.78 0.21 -0.89 16 7 C 0.09 0.86 6.49 86.73 0.56 1.42 16 8 N -0.62 -11.98 3.33 -811.68 -2.70 -14.68 16 9 C 0.52 14.05 7.84 87.66 0.69 14.74 16 10 O -0.58 -22.82 16.29 -3.02 -0.05 -22.87 16 11 C -0.07 -1.45 5.02 29.11 0.15 -1.30 16 12 C -0.15 -4.87 4.38 -19.83 -0.09 -4.96 16 13 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 14 C -0.21 -9.54 9.99 22.39 0.22 -9.32 16 15 C 0.11 6.00 6.65 22.58 0.15 6.15 16 16 O -0.23 -14.82 9.76 -22.74 -0.22 -15.04 16 17 C -0.42 -25.36 9.49 67.92 0.64 -24.71 16 18 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 19 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 20 N -0.92 -58.43 13.67 21.61 0.30 -58.13 16 21 Si 1.02 44.45 29.55 68.60 2.03 46.48 16 22 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.24 -11.44 9.17 22.39 0.21 -11.23 16 26 C -0.06 -2.20 9.69 22.25 0.22 -1.99 16 27 C 0.10 2.11 6.64 86.85 0.58 2.68 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.47 8.11 -2.38 -0.02 0.45 16 33 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.13 1.87 8.08 -2.39 -0.02 1.85 16 38 H 0.13 1.89 8.08 -2.39 -0.02 1.87 16 39 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 40 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 41 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 42 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 43 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.06 1.48 8.04 -2.39 -0.02 1.46 16 Total: -1.00 -85.58 378.40 4.36 -81.23 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.98 Total: 21.27 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 5.54 Total: -30.68 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -2.41 Total: -72.82 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.78 Total: -45.48 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -85.58 4.36 -81.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885344488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.331 kcal (2) G-P(sol) polarization free energy of solvation -85.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds