Wall clock time and date at job start Tue Mar 31 2020 12:37:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.47396 * 2 1
4 4 C 1.34776 * 120.00226 * 262.67627 * 3 2 1
5 5 O 1.21549 * 119.99908 * 180.14992 * 4 3 2
6 6 C 1.47883 * 120.00055 * 0.14735 * 4 3 2
7 7 C 1.39927 * 120.02639 * 213.85349 * 6 4 3
8 8 C 1.38320 * 120.35850 * 180.02562 * 7 6 4
9 9 C 1.37750 * 120.41300 * 359.95844 * 8 7 6
10 10 C 1.40746 * 120.03973 * 0.03678 * 9 8 7
11 11 C 1.41441 * 120.17951 * 179.97438 * 10 9 8
12 12 H 1.08000 * 120.00228 * 210.66736 * 11 10 9
13 13 C 1.39942 * 119.99948 * 30.65935 * 11 10 9
14 14 N 1.30833 * 119.99719 * 8.76231 * 13 11 10
15 15 Si 1.86799 * 120.00156 * 188.76005 * 13 11 10
16 16 H 1.48495 * 109.47126 * 84.99778 * 15 13 11
17 17 H 1.48499 * 109.47003 * 205.00304 * 15 13 11
18 18 H 1.48499 * 109.46720 * 324.99491 * 15 13 11
19 19 C 1.38988 * 120.02611 * 33.86960 * 6 4 3
20 20 C 1.46498 * 119.99894 * 82.67607 * 3 2 1
21 21 C 1.52995 * 109.47463 * 133.50232 * 20 3 2
22 22 C 1.52999 * 109.47072 * 253.50548 * 20 3 2
23 23 C 1.50702 * 109.47193 * 13.50293 * 20 3 2
24 24 O 1.20825 * 120.00267 * 134.78130 * 23 20 3
25 25 O 1.34233 * 119.99956 * 314.77958 * 23 20 3
26 26 C 1.45203 * 116.99906 * 179.97438 * 25 23 20
27 27 H 1.09005 * 109.47190 * 47.33594 * 1 2 3
28 28 H 1.08996 * 109.47758 * 167.33979 * 1 2 3
29 29 H 1.08999 * 109.46702 * 287.33944 * 1 2 3
30 30 H 1.09004 * 109.46905 * 240.00070 * 2 1 3
31 31 H 1.09000 * 109.47367 * 120.01017 * 2 1 3
32 32 H 1.07996 * 119.81555 * 0.02562 * 7 6 4
33 33 H 1.08004 * 119.79602 * 179.97438 * 8 7 6
34 34 H 1.08006 * 119.98148 * 179.97438 * 9 8 7
35 35 H 0.96996 * 119.99710 * 180.02562 * 14 13 11
36 36 H 1.08004 * 120.20296 * 359.71289 * 19 6 4
37 37 H 1.08998 * 109.47112 * 59.99888 * 21 20 3
38 38 H 1.09003 * 109.47444 * 180.02562 * 21 20 3
39 39 H 1.09003 * 109.47145 * 300.00190 * 21 20 3
40 40 H 1.08995 * 109.47331 * 59.99805 * 22 20 3
41 41 H 1.09007 * 109.47325 * 179.97438 * 22 20 3
42 42 H 1.08997 * 109.47320 * 299.99722 * 22 20 3
43 43 H 1.09006 * 109.46702 * 179.97438 * 26 25 23
44 44 H 1.08989 * 109.47118 * 300.00192 * 26 25 23
45 45 H 1.08998 * 109.46552 * 60.00649 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3833 1.9669 -1.1576
5 8 2.7911 3.1120 -1.1572
6 6 2.2877 1.2165 -2.4284
7 6 3.2252 1.4363 -3.4436
8 6 3.1420 0.7386 -4.6350
9 6 2.1362 -0.1809 -4.8359
10 6 1.1841 -0.4155 -3.8262
11 6 0.1498 -1.3586 -4.0295
12 1 -0.8097 -1.2187 -3.5539
13 6 0.3697 -2.4729 -4.8470
14 7 1.5744 -2.7360 -5.2840
15 14 -1.0569 -3.5847 -5.3141
16 1 -1.7501 -3.0272 -6.5032
17 1 -0.5437 -4.9416 -5.6312
18 1 -2.0109 -3.6691 -4.1792
19 6 1.2663 0.2927 -2.6153
20 6 2.1101 2.1256 1.2584
21 6 3.4667 2.8285 1.3375
22 6 0.9915 3.1678 1.3170
23 6 1.9698 1.1726 2.4173
24 8 2.7226 1.2517 3.3591
25 8 1.0086 0.2357 2.4033
26 6 0.9328 -0.6482 3.5528
27 1 -0.3634 0.6965 -0.7557
28 1 -0.3634 -1.0026 -0.2252
29 1 -0.3633 0.3063 0.9810
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5140 0.8899
32 1 4.0181 2.1546 -3.2960
33 1 3.8702 0.9157 -5.4127
34 1 2.0775 -0.7214 -5.7691
35 1 1.7268 -3.5081 -5.8509
36 1 0.5430 0.1166 -1.8328
37 1 3.5682 3.5179 0.4993
38 1 3.5351 3.3821 2.2740
39 1 4.2636 2.0860 1.2957
40 1 0.0250 2.6671 1.2607
41 1 1.0594 3.7215 2.2535
42 1 1.0929 3.8572 0.4789
43 1 0.1149 -1.3553 3.4140
44 1 1.8713 -1.1930 3.6547
45 1 0.7548 -0.0594 4.4526
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000886422815.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:13
Heat of formation + Delta-G solvation = -66.614308 kcal
Electronic energy + Delta-G solvation = -28421.097358 eV
Core-core repulsion = 24598.144452 eV
Total energy + Delta-G solvation = -3822.952906 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.29018 -39.62210 -37.35157 -36.77574 -35.99217 -33.89832 -33.25895 -30.13868
-29.59381 -29.27506 -28.07782 -27.21254 -25.33287 -24.36303 -22.77537 -22.47272
-21.02740 -20.27171 -19.02900 -17.68648 -17.32960 -16.86932 -16.65485 -15.82114
-15.64700 -15.04959 -14.98472 -14.58321 -14.26479 -13.77123 -13.58525 -13.24000
-13.07632 -12.93186 -12.91503 -12.59851 -12.36291 -12.23201 -12.06617 -11.98002
-11.76092 -11.62495 -11.45981 -11.25829 -11.21613 -11.12982 -10.94235 -10.63989
-10.55242 -10.48323 -10.23563 -10.07201 -9.41095 -9.29454 -8.91389 -8.47684
-7.58910 -7.46973 -6.76636 -4.47637 1.93505 2.20711 2.54354 2.71666
3.04058 3.06187 3.10984 3.24994 3.62887 3.89723 4.43228 4.59359
4.85466 4.94370 4.98725 5.04966 5.27250 5.35509 5.39407 5.51842
5.54135 5.67503 5.70888 5.76103 5.88598 5.94924 6.05631 6.16870
6.19886 6.22711 6.33135 6.38717 6.41817 6.62716 6.83464 6.85562
6.90588 7.00427 7.17020 7.32987 7.56259 7.60239 7.73725 7.89259
7.92376 8.09111 8.49910 8.68043 8.79679 8.82200 10.18203
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.015242 B = 0.004421 C = 0.003662
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1836.545549 B = 6331.786133 C = 7644.914524
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.087 3.913
3 N -0.604 5.604
4 C 0.576 3.424
5 O -0.547 6.547
6 C -0.120 4.120
7 C -0.171 4.171
8 C -0.119 4.119
9 C -0.129 4.129
10 C 0.099 3.901
11 C -0.465 4.465
12 H 0.077 0.923
13 C 0.074 3.926
14 N -0.807 5.807
15 Si 0.910 3.090
16 H -0.268 1.268
17 H -0.279 1.279
18 H -0.263 1.263
19 C -0.208 4.208
20 C 0.191 3.809
21 C -0.164 4.164
22 C -0.158 4.158
23 C 0.467 3.533
24 O -0.499 6.499
25 O -0.338 6.338
26 C 0.025 3.975
27 H 0.066 0.934
28 H 0.069 0.931
29 H 0.068 0.932
30 H 0.111 0.889
31 H 0.074 0.926
32 H 0.097 0.903
33 H 0.095 0.905
34 H 0.123 0.877
35 H 0.280 0.720
36 H 0.133 0.867
37 H 0.114 0.886
38 H 0.067 0.933
39 H 0.058 0.942
40 H 0.069 0.931
41 H 0.067 0.933
42 H 0.087 0.913
43 H 0.103 0.897
44 H 0.063 0.937
45 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.657 2.104 11.566 12.052
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.035 4.035
3 N -0.340 5.340
4 C 0.369 3.631
5 O -0.426 6.426
6 C -0.123 4.123
7 C -0.191 4.191
8 C -0.138 4.138
9 C -0.149 4.149
10 C 0.097 3.903
11 C -0.495 4.495
12 H 0.096 0.904
13 C -0.142 4.142
14 N -0.433 5.433
15 Si 0.735 3.265
16 H -0.194 1.194
17 H -0.204 1.204
18 H -0.187 1.187
19 C -0.227 4.227
20 C 0.105 3.895
21 C -0.221 4.221
22 C -0.216 4.216
23 C 0.309 3.691
24 O -0.384 6.384
25 O -0.254 6.254
26 C -0.068 4.068
27 H 0.084 0.916
28 H 0.088 0.912
29 H 0.087 0.913
30 H 0.128 0.872
31 H 0.092 0.908
32 H 0.116 0.884
33 H 0.113 0.887
34 H 0.140 0.860
35 H 0.091 0.909
36 H 0.150 0.850
37 H 0.132 0.868
38 H 0.086 0.914
39 H 0.077 0.923
40 H 0.088 0.912
41 H 0.086 0.914
42 H 0.106 0.894
43 H 0.121 0.879
44 H 0.081 0.919
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -2.094 2.501 11.769 12.213
hybrid contribution -0.532 -0.903 0.002 1.048
sum -2.626 1.598 11.771 12.166
Atomic orbital electron populations
1.22401 0.95560 1.02826 1.02025 1.22342 0.95306 0.81416 1.04429
1.48016 1.66343 1.14722 1.04922 1.18912 0.74857 0.85937 0.83401
1.90546 1.47212 1.18258 1.86567 1.19227 1.00049 1.00295 0.92762
1.20422 1.00786 1.03488 0.94444 1.20690 0.98894 0.97931 0.96244
1.21622 0.96148 0.97319 0.99788 1.17578 0.92506 0.90732 0.89517
1.19487 0.99174 1.05060 1.25784 0.90442 1.25846 0.96322 0.98137
0.93901 1.69754 1.21051 1.25649 1.26886 0.86287 0.81485 0.78858
0.79843 1.19351 1.20406 1.18732 1.22308 1.00708 1.00784 0.98908
1.20311 0.99215 0.89637 0.80367 1.22393 0.92790 1.02049 1.04889
1.22212 0.97140 0.98500 1.03762 1.23821 0.77660 0.79612 0.88004
1.90656 1.42404 1.69520 1.35848 1.86943 1.52091 1.42697 1.43694
1.23308 1.03316 0.92963 0.87253 0.91551 0.91200 0.91335 0.87154
0.90821 0.88437 0.88665 0.85960 0.90918 0.84962 0.86761 0.91417
0.92285 0.91233 0.91446 0.89405 0.87862 0.91853 0.92077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.39 8.27 37.16 0.31 -2.09 16
2 C 0.09 1.35 4.83 -4.04 -0.02 1.34 16
3 N -0.60 -10.07 2.42 -161.19 -0.39 -10.46 16
4 C 0.58 11.37 6.89 -12.31 -0.08 11.29 16
5 O -0.55 -11.42 13.12 5.32 0.07 -11.35 16
6 C -0.12 -2.62 5.33 -105.04 -0.56 -3.18 16
7 C -0.17 -3.80 9.61 -38.92 -0.37 -4.18 16
8 C -0.12 -2.67 10.01 -39.73 -0.40 -3.07 16
9 C -0.13 -3.15 8.64 -38.81 -0.34 -3.49 16
10 C 0.10 2.42 5.53 -106.87 -0.59 1.83 16
11 C -0.46 -11.31 9.06 -37.73 -0.34 -11.65 16
12 H 0.08 1.80 7.86 -52.49 -0.41 1.39 16
13 C 0.07 1.74 5.28 -17.34 -0.09 1.65 16
14 N -0.81 -19.73 10.86 55.55 0.60 -19.13 16
15 Si 0.91 17.71 29.57 -169.99 -5.03 12.69 16
16 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16
17 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16
18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16
19 C -0.21 -4.57 7.17 -38.45 -0.28 -4.84 16
20 C 0.19 2.83 0.94 -132.97 -0.13 2.71 16
21 C -0.16 -2.48 7.54 37.16 0.28 -2.20 16
22 C -0.16 -2.06 8.57 37.16 0.32 -1.74 16
23 C 0.47 6.63 5.97 36.01 0.21 6.85 16
24 O -0.50 -7.88 15.74 -18.75 -0.30 -8.17 16
25 O -0.34 -4.10 4.68 -39.27 -0.18 -4.29 16
26 C 0.03 0.23 10.56 101.05 1.07 1.29 16
27 H 0.07 1.03 6.63 -51.93 -0.34 0.68 16
28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.07 0.85 5.85 -51.93 -0.30 0.55 16
30 H 0.11 2.00 5.00 -51.93 -0.26 1.74 16
31 H 0.07 1.06 5.42 -51.93 -0.28 0.78 16
32 H 0.10 2.07 7.97 -52.49 -0.42 1.65 16
33 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16
34 H 0.12 3.09 6.28 -52.48 -0.33 2.76 16
35 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16
36 H 0.13 2.61 2.49 -52.48 -0.13 2.48 16
37 H 0.11 1.90 5.33 -51.93 -0.28 1.62 16
38 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16
39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
41 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16
42 H 0.09 1.26 7.22 -51.93 -0.37 0.89 16
43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
44 H 0.06 0.58 8.13 -51.94 -0.42 0.16 16
45 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16
LS Contribution 353.23 15.07 5.32 5.32
Total: -1.00 -27.54 353.23 -6.97 -34.51
By element:
Atomic # 1 Polarization: 16.42 SS G_CDS: -6.06 Total: 10.36 kcal
Atomic # 6 Polarization: -8.47 SS G_CDS: -1.01 Total: -9.48 kcal
Atomic # 7 Polarization: -29.80 SS G_CDS: 0.21 Total: -29.59 kcal
Atomic # 8 Polarization: -23.40 SS G_CDS: -0.41 Total: -23.81 kcal
Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -27.54 -6.97 -34.51 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000886422815.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.109 kcal
(2) G-P(sol) polarization free energy of solvation -27.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.505 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds