Wall clock time and date at job start Tue Mar 31 2020 12:37:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.47396 * 2 1
4 4 C 1.34776 * 120.00226 * 262.67627 * 3 2 1
5 5 O 1.21549 * 119.99908 * 180.14992 * 4 3 2
6 6 C 1.47883 * 120.00055 * 0.14735 * 4 3 2
7 7 C 1.39927 * 120.02639 * 213.85349 * 6 4 3
8 8 C 1.38320 * 120.35850 * 180.02562 * 7 6 4
9 9 C 1.37750 * 120.41300 * 359.95844 * 8 7 6
10 10 C 1.40746 * 120.03973 * 0.03678 * 9 8 7
11 11 C 1.41441 * 120.17951 * 179.97438 * 10 9 8
12 12 H 1.08000 * 120.00228 * 210.66736 * 11 10 9
13 13 C 1.39942 * 119.99948 * 30.65935 * 11 10 9
14 14 N 1.30833 * 119.99719 * 8.76231 * 13 11 10
15 15 Si 1.86799 * 120.00156 * 188.76005 * 13 11 10
16 16 H 1.48495 * 109.47126 * 84.99778 * 15 13 11
17 17 H 1.48499 * 109.47003 * 205.00304 * 15 13 11
18 18 H 1.48499 * 109.46720 * 324.99491 * 15 13 11
19 19 C 1.38988 * 120.02611 * 33.86960 * 6 4 3
20 20 C 1.46498 * 119.99894 * 82.67607 * 3 2 1
21 21 C 1.52995 * 109.47463 * 133.50232 * 20 3 2
22 22 C 1.52999 * 109.47072 * 253.50548 * 20 3 2
23 23 C 1.50702 * 109.47193 * 13.50293 * 20 3 2
24 24 O 1.20825 * 120.00267 * 134.78130 * 23 20 3
25 25 O 1.34233 * 119.99956 * 314.77958 * 23 20 3
26 26 C 1.45203 * 116.99906 * 179.97438 * 25 23 20
27 27 H 1.09005 * 109.47190 * 47.33594 * 1 2 3
28 28 H 1.08996 * 109.47758 * 167.33979 * 1 2 3
29 29 H 1.08999 * 109.46702 * 287.33944 * 1 2 3
30 30 H 1.09004 * 109.46905 * 240.00070 * 2 1 3
31 31 H 1.09000 * 109.47367 * 120.01017 * 2 1 3
32 32 H 1.07996 * 119.81555 * 0.02562 * 7 6 4
33 33 H 1.08004 * 119.79602 * 179.97438 * 8 7 6
34 34 H 1.08006 * 119.98148 * 179.97438 * 9 8 7
35 35 H 0.96996 * 119.99710 * 180.02562 * 14 13 11
36 36 H 1.08004 * 120.20296 * 359.71289 * 19 6 4
37 37 H 1.08998 * 109.47112 * 59.99888 * 21 20 3
38 38 H 1.09003 * 109.47444 * 180.02562 * 21 20 3
39 39 H 1.09003 * 109.47145 * 300.00190 * 21 20 3
40 40 H 1.08995 * 109.47331 * 59.99805 * 22 20 3
41 41 H 1.09007 * 109.47325 * 179.97438 * 22 20 3
42 42 H 1.08997 * 109.47320 * 299.99722 * 22 20 3
43 43 H 1.09006 * 109.46702 * 179.97438 * 26 25 23
44 44 H 1.08989 * 109.47118 * 300.00192 * 26 25 23
45 45 H 1.08998 * 109.46552 * 60.00649 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3833 1.9669 -1.1576
5 8 2.7911 3.1120 -1.1572
6 6 2.2877 1.2165 -2.4284
7 6 3.2252 1.4363 -3.4436
8 6 3.1420 0.7386 -4.6350
9 6 2.1362 -0.1809 -4.8359
10 6 1.1841 -0.4155 -3.8262
11 6 0.1498 -1.3586 -4.0295
12 1 -0.8097 -1.2187 -3.5539
13 6 0.3697 -2.4729 -4.8470
14 7 1.5744 -2.7360 -5.2840
15 14 -1.0569 -3.5847 -5.3141
16 1 -1.7501 -3.0272 -6.5032
17 1 -0.5437 -4.9416 -5.6312
18 1 -2.0109 -3.6691 -4.1792
19 6 1.2663 0.2927 -2.6153
20 6 2.1101 2.1256 1.2584
21 6 3.4667 2.8285 1.3375
22 6 0.9915 3.1678 1.3170
23 6 1.9698 1.1726 2.4173
24 8 2.7226 1.2517 3.3591
25 8 1.0086 0.2357 2.4033
26 6 0.9328 -0.6482 3.5528
27 1 -0.3634 0.6965 -0.7557
28 1 -0.3634 -1.0026 -0.2252
29 1 -0.3633 0.3063 0.9810
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5140 0.8899
32 1 4.0181 2.1546 -3.2960
33 1 3.8702 0.9157 -5.4127
34 1 2.0775 -0.7214 -5.7691
35 1 1.7268 -3.5081 -5.8509
36 1 0.5430 0.1166 -1.8328
37 1 3.5682 3.5179 0.4993
38 1 3.5351 3.3821 2.2740
39 1 4.2636 2.0860 1.2957
40 1 0.0250 2.6671 1.2607
41 1 1.0594 3.7215 2.2535
42 1 1.0929 3.8572 0.4789
43 1 0.1149 -1.3553 3.4140
44 1 1.8713 -1.1930 3.6547
45 1 0.7548 -0.0594 4.4526
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000886422815.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:12
Heat of formation + Delta-G solvation = -79.340997 kcal
Electronic energy + Delta-G solvation = -28421.649229 eV
Core-core repulsion = 24598.144452 eV
Total energy + Delta-G solvation = -3823.504777 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.49199 -41.00157 -39.00631 -37.86842 -37.40440 -35.54963 -34.67532 -31.83411
-31.18583 -30.75625 -28.93724 -28.31644 -27.13997 -25.57490 -24.10233 -23.92481
-22.69895 -21.70426 -20.43174 -18.96346 -18.82053 -18.06072 -17.82650 -17.41141
-17.11719 -16.63517 -16.31692 -16.06960 -15.64514 -15.18969 -14.73410 -14.66287
-14.55673 -14.46862 -14.08887 -13.70503 -13.60645 -13.53203 -13.40839 -13.28435
-13.10923 -12.90581 -12.79781 -12.73516 -12.67051 -12.42436 -12.31978 -12.16011
-12.01312 -11.83510 -11.58411 -11.42565 -11.10928 -11.03982 -10.47687 -9.84714
-9.34990 -9.28688 -8.52902 -6.32928 0.48934 0.79893 0.97757 1.45538
1.50572 1.54277 1.57128 1.90759 2.00833 2.27169 2.82557 3.31827
3.68599 3.73036 3.81880 3.89518 4.01815 4.31357 4.35480 4.39130
4.45576 4.50531 4.57910 4.59181 4.64115 4.71197 4.73165 4.75894
4.93825 5.02868 5.05380 5.11201 5.13540 5.16057 5.19236 5.26149
5.38693 5.47347 5.57556 5.61985 5.84778 6.03193 6.09500 6.25153
6.32115 6.50506 6.67512 6.97610 6.99692 7.15260 8.43611
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.015242 B = 0.004421 C = 0.003662
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1836.545549 B = 6331.786133 C = 7644.914524
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.086 3.914
3 N -0.596 5.596
4 C 0.575 3.425
5 O -0.561 6.561
6 C -0.128 4.128
7 C -0.183 4.183
8 C -0.119 4.119
9 C -0.155 4.155
10 C 0.072 3.928
11 C -0.489 4.489
12 H 0.083 0.917
13 C 0.035 3.965
14 N -0.838 5.838
15 Si 0.980 3.020
16 H -0.267 1.267
17 H -0.275 1.275
18 H -0.254 1.254
19 C -0.201 4.201
20 C 0.183 3.817
21 C -0.159 4.159
22 C -0.153 4.153
23 C 0.475 3.525
24 O -0.515 6.515
25 O -0.339 6.339
26 C 0.019 3.981
27 H 0.051 0.949
28 H 0.077 0.923
29 H 0.090 0.910
30 H 0.083 0.917
31 H 0.091 0.909
32 H 0.105 0.895
33 H 0.115 0.885
34 H 0.107 0.893
35 H 0.285 0.715
36 H 0.154 0.846
37 H 0.098 0.902
38 H 0.084 0.916
39 H 0.047 0.953
40 H 0.079 0.921
41 H 0.089 0.911
42 H 0.072 0.928
43 H 0.133 0.867
44 H 0.060 0.940
45 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.225 1.514 13.412 14.143
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.035 4.035
3 N -0.330 5.330
4 C 0.367 3.633
5 O -0.442 6.442
6 C -0.131 4.131
7 C -0.203 4.203
8 C -0.138 4.138
9 C -0.175 4.175
10 C 0.070 3.930
11 C -0.519 4.519
12 H 0.101 0.899
13 C -0.178 4.178
14 N -0.465 5.465
15 Si 0.801 3.199
16 H -0.192 1.192
17 H -0.200 1.200
18 H -0.177 1.177
19 C -0.220 4.220
20 C 0.098 3.902
21 C -0.216 4.216
22 C -0.211 4.211
23 C 0.317 3.683
24 O -0.403 6.403
25 O -0.255 6.255
26 C -0.074 4.074
27 H 0.070 0.930
28 H 0.096 0.904
29 H 0.109 0.891
30 H 0.101 0.899
31 H 0.109 0.891
32 H 0.123 0.877
33 H 0.133 0.867
34 H 0.125 0.875
35 H 0.095 0.905
36 H 0.171 0.829
37 H 0.116 0.884
38 H 0.103 0.897
39 H 0.066 0.934
40 H 0.098 0.902
41 H 0.108 0.892
42 H 0.091 0.909
43 H 0.151 0.849
44 H 0.079 0.921
45 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -3.672 1.904 13.640 14.254
hybrid contribution 0.008 -0.708 -0.472 0.851
sum -3.664 1.196 13.168 13.721
Atomic orbital electron populations
1.22325 0.93954 1.02987 1.02794 1.22370 0.96526 0.80703 1.03908
1.47953 1.65140 1.15039 1.04855 1.18598 0.75375 0.85646 0.83702
1.90549 1.48052 1.18724 1.86891 1.19532 0.99608 1.00085 0.93832
1.20622 1.01299 1.03730 0.94645 1.20881 0.98731 0.97217 0.96947
1.21583 0.97649 0.98624 0.99618 1.17933 0.93058 0.91589 0.90415
1.19749 0.99445 1.05740 1.27011 0.89888 1.26655 0.98654 0.99229
0.93303 1.69835 1.22917 1.26371 1.27373 0.85232 0.78234 0.76815
0.79572 1.19231 1.19963 1.17723 1.22570 1.00935 0.99907 0.98610
1.20478 0.99810 0.90267 0.79682 1.22298 0.92749 1.01553 1.05048
1.22180 0.96743 0.97854 1.04319 1.23505 0.77792 0.79713 0.87277
1.90657 1.43160 1.70052 1.36416 1.86880 1.51008 1.42384 1.45184
1.23638 1.04453 0.92868 0.86452 0.93037 0.90382 0.89116 0.89875
0.89143 0.87677 0.86705 0.87541 0.90465 0.82880 0.88368 0.89720
0.93411 0.90199 0.89189 0.90943 0.84861 0.92074 0.91345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.22 8.27 71.98 0.60 -3.62 16
2 C 0.09 2.58 4.83 86.38 0.42 2.99 16
3 N -0.60 -19.23 2.42 -782.15 -1.89 -21.13 16
4 C 0.57 22.62 6.89 86.80 0.60 23.21 16
5 O -0.56 -23.46 13.12 -3.87 -0.05 -23.52 16
6 C -0.13 -5.60 5.33 -20.13 -0.11 -5.71 16
7 C -0.18 -8.24 9.61 22.70 0.22 -8.02 16
8 C -0.12 -5.48 10.01 22.17 0.22 -5.26 16
9 C -0.15 -7.81 8.64 22.77 0.20 -7.61 16
10 C 0.07 3.61 5.53 -21.32 -0.12 3.49 16
11 C -0.49 -24.04 9.06 23.47 0.21 -23.83 16
12 H 0.08 3.84 7.86 -2.91 -0.02 3.82 16
13 C 0.03 1.64 5.28 85.25 0.45 2.09 16
14 N -0.84 -41.72 10.86 21.83 0.24 -41.48 16
15 Si 0.98 35.88 29.57 68.60 2.03 37.91 16
16 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16
17 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16
18 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16
19 C -0.20 -8.93 7.17 23.01 0.16 -8.77 16
20 C 0.18 5.13 0.94 2.86 0.00 5.13 16
21 C -0.16 -4.66 7.54 71.98 0.54 -4.12 16
22 C -0.15 -3.66 8.57 71.98 0.62 -3.05 16
23 C 0.47 12.34 5.97 71.24 0.43 12.76 16
24 O -0.52 -15.15 15.74 21.97 0.35 -14.81 16
25 O -0.34 -7.16 4.68 -51.45 -0.24 -7.40 16
26 C 0.02 0.27 10.56 113.37 1.20 1.47 16
27 H 0.05 1.51 6.63 -2.38 -0.02 1.49 16
28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
29 H 0.09 1.95 5.85 -2.39 -0.01 1.94 16
30 H 0.08 2.99 5.00 -2.39 -0.01 2.98 16
31 H 0.09 2.41 5.42 -2.39 -0.01 2.40 16
32 H 0.11 4.50 7.97 -2.91 -0.02 4.48 16
33 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16
34 H 0.11 5.62 6.28 -2.91 -0.02 5.60 16
35 H 0.28 13.01 8.30 -92.71 -0.77 12.24 16
36 H 0.15 5.99 2.49 -2.91 -0.01 5.99 16
37 H 0.10 3.24 5.33 -2.39 -0.01 3.23 16
38 H 0.08 2.16 7.94 -2.39 -0.02 2.14 16
39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16
41 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16
42 H 0.07 1.99 7.22 -2.39 -0.02 1.97 16
43 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16
44 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16
45 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16
Total: -1.00 -59.81 353.23 7.08 -52.73
By element:
Atomic # 1 Polarization: 35.50 SS G_CDS: 1.02 Total: 36.52 kcal
Atomic # 6 Polarization: -24.47 SS G_CDS: 5.63 Total: -18.84 kcal
Atomic # 7 Polarization: -60.95 SS G_CDS: -1.66 Total: -62.61 kcal
Atomic # 8 Polarization: -45.78 SS G_CDS: 0.05 Total: -45.72 kcal
Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal
Total: -59.81 7.08 -52.73 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000886422815.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.610 kcal
(2) G-P(sol) polarization free energy of solvation -59.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.417 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.076 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.731 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.341 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds