Wall clock time and date at job start Tue Mar 31 2020 12:37:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46507 * 109.46864 * 2 1
4 4 C 1.34774 * 119.99884 * 96.68723 * 3 2 1
5 5 O 1.21585 * 120.00098 * 184.58480 * 4 3 2
6 6 C 1.47641 * 120.00279 * 4.59400 * 4 3 2
7 7 C 1.40009 * 119.89857 * 130.55534 * 6 4 3
8 8 C 1.36316 * 120.10917 * 180.25767 * 7 6 4
9 9 C 1.40889 * 119.89189 * 359.52086 * 8 7 6
10 10 C 1.41105 * 120.10845 * 180.23334 * 9 8 7
11 11 H 1.07996 * 120.00374 * 191.75375 * 10 9 8
12 12 C 1.40227 * 119.99713 * 11.75598 * 10 9 8
13 13 N 1.30642 * 120.00058 * 32.99740 * 12 10 9
14 14 Si 1.86796 * 119.99812 * 212.99584 * 12 10 9
15 15 H 1.48502 * 109.47276 * 94.99969 * 14 12 10
16 16 H 1.48508 * 109.47269 * 214.99687 * 14 12 10
17 17 H 1.48502 * 109.47494 * 334.99829 * 14 12 10
18 18 C 1.40898 * 119.79052 * 0.49890 * 9 8 7
19 19 C 1.36311 * 119.89080 * 359.73252 * 18 9 8
20 20 C 1.46495 * 119.99912 * 276.68948 * 3 2 1
21 21 C 1.53005 * 109.47048 * 102.26452 * 20 3 2
22 22 C 1.53001 * 109.47132 * 222.26192 * 20 3 2
23 23 C 1.50699 * 109.47539 * 342.26766 * 20 3 2
24 24 O 1.20819 * 120.00386 * 126.25564 * 23 20 3
25 25 O 1.34234 * 119.99602 * 306.25613 * 23 20 3
26 26 C 1.45199 * 116.99861 * 179.97438 * 25 23 20
27 27 H 1.08995 * 109.47127 * 346.11121 * 1 2 3
28 28 H 1.08999 * 109.46541 * 106.10997 * 1 2 3
29 29 H 1.09000 * 109.46555 * 226.10828 * 1 2 3
30 30 H 1.08994 * 109.47107 * 240.00205 * 2 1 3
31 31 H 1.09002 * 109.47394 * 119.99660 * 2 1 3
32 32 H 1.07999 * 119.94930 * 359.97438 * 7 6 4
33 33 H 1.07998 * 120.05656 * 179.72229 * 8 7 6
34 34 H 0.97008 * 119.99870 * 179.97438 * 13 12 10
35 35 H 1.08000 * 120.05452 * 179.71316 * 18 9 8
36 36 H 1.08005 * 119.94838 * 179.97438 * 19 18 9
37 37 H 1.09000 * 109.46998 * 60.00196 * 21 20 3
38 38 H 1.08996 * 109.46971 * 179.97438 * 21 20 3
39 39 H 1.08995 * 109.47030 * 299.99812 * 21 20 3
40 40 H 1.09002 * 109.46942 * 60.00288 * 22 20 3
41 41 H 1.09006 * 109.47058 * 179.97438 * 22 20 3
42 42 H 1.08996 * 109.47065 * 300.00157 * 22 20 3
43 43 H 1.08993 * 109.47267 * 299.99936 * 26 25 23
44 44 H 1.08996 * 109.46924 * 60.00803 * 26 25 23
45 45 H 1.09000 * 109.46825 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.3711 1.9713 1.1593
5 8 2.6967 3.1427 1.1708
6 6 2.3623 1.1953 2.4152
7 6 3.4774 1.2243 3.2614
8 6 3.4759 0.5053 4.4195
9 6 2.3460 -0.2600 4.7694
10 6 2.3376 -1.0021 5.9695
11 1 1.5617 -1.7318 6.1479
12 6 3.3370 -0.7922 6.9305
13 7 3.8523 0.3980 7.0878
14 14 3.9313 -2.2143 7.9859
15 1 5.1433 -2.8137 7.3718
16 1 4.2598 -1.7176 9.3464
17 1 2.8635 -3.2421 8.0785
18 6 1.2263 -0.2865 3.9144
19 6 1.2390 0.4321 2.7561
20 6 2.1231 2.1211 -1.2601
21 6 0.9449 3.0896 -1.3824
22 6 3.4348 2.9085 -1.2816
23 6 2.0994 1.1529 -2.4146
24 8 1.2994 1.2980 -3.3084
25 8 2.9670 0.1293 -2.4500
26 6 2.8864 -0.7639 -3.5919
27 1 -0.3633 0.9976 0.2467
28 1 -0.3632 -0.2852 -0.9873
29 1 -0.3632 -0.7125 0.7406
30 1 1.8934 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8900
32 1 4.3419 1.8138 2.9939
33 1 4.3383 0.5248 5.0693
34 1 4.5434 0.5432 7.7529
35 1 0.3597 -0.8754 4.1762
36 1 0.3814 0.4121 2.0999
37 1 0.9621 3.7899 -0.5473
38 1 1.0231 3.6404 -2.3197
39 1 0.0105 2.5287 -1.3670
40 1 4.2742 2.2186 -1.1945
41 1 3.5130 3.4587 -2.2194
42 1 3.4519 3.6088 -0.4466
43 1 1.8962 -1.2179 -3.6289
44 1 3.0619 -0.1995 -4.5077
45 1 3.6411 -1.5446 -3.4965
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000886426877.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:16
Heat of formation + Delta-G solvation = -88.101655 kcal
Electronic energy + Delta-G solvation = -27948.598039 eV
Core-core repulsion = 24124.713371 eV
Total energy + Delta-G solvation = -3823.884668 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.18368 -39.48835 -37.36091 -36.72130 -35.76506 -34.25225 -33.17491 -30.22874
-29.50568 -29.36698 -28.18297 -27.09528 -25.95578 -24.16160 -22.82818 -22.01412
-21.09779 -20.22463 -18.80923 -17.72555 -17.55139 -16.98439 -16.66154 -16.11649
-15.45109 -15.22710 -14.76654 -14.41262 -14.13362 -13.74431 -13.58920 -13.51450
-13.10892 -12.88866 -12.72682 -12.64497 -12.39101 -12.24372 -12.12096 -12.04446
-11.98599 -11.75711 -11.55338 -11.25388 -11.20553 -11.14040 -11.07882 -10.90684
-10.73180 -10.63147 -10.41023 -10.08442 -9.57403 -9.14047 -8.77137 -8.40602
-7.71253 -7.60973 -7.16258 -4.54866 1.92109 2.38528 2.53244 2.88927
2.95416 2.98231 3.04518 3.33517 3.60146 3.70861 4.33733 4.50821
4.88307 4.93064 4.98488 5.00252 5.12239 5.33798 5.41150 5.50819
5.55524 5.60316 5.68695 5.80840 5.88608 5.90792 5.94748 6.10404
6.11438 6.24993 6.26777 6.28358 6.37365 6.44973 6.75375 6.82585
6.90982 7.09452 7.14663 7.43085 7.57649 7.63078 7.79049 7.87188
8.01150 8.06884 8.41215 8.64178 8.78446 8.89215 9.75060
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.021857 B = 0.003333 C = 0.003212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.734813 B = 8399.250577 C = 8715.656166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.088 3.912
3 N -0.607 5.607
4 C 0.589 3.411
5 O -0.554 6.554
6 C -0.290 4.290
7 C -0.037 4.037
8 C -0.199 4.199
9 C 0.122 3.878
10 C -0.444 4.444
11 H 0.086 0.914
12 C 0.083 3.917
13 N -0.746 5.746
14 Si 0.906 3.094
15 H -0.263 1.263
16 H -0.275 1.275
17 H -0.257 1.257
18 C -0.244 4.244
19 C -0.053 4.053
20 C 0.191 3.809
21 C -0.146 4.146
22 C -0.177 4.177
23 C 0.471 3.529
24 O -0.500 6.500
25 O -0.348 6.348
26 C 0.031 3.969
27 H 0.065 0.935
28 H 0.049 0.951
29 H 0.070 0.930
30 H 0.076 0.924
31 H 0.107 0.893
32 H 0.091 0.909
33 H 0.119 0.881
34 H 0.289 0.711
35 H 0.094 0.906
36 H 0.100 0.900
37 H 0.082 0.918
38 H 0.069 0.931
39 H 0.063 0.937
40 H 0.065 0.935
41 H 0.059 0.941
42 H 0.121 0.879
43 H 0.063 0.937
44 H 0.061 0.939
45 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.787 -2.774 -13.020 13.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.035 4.035
3 N -0.343 5.343
4 C 0.384 3.616
5 O -0.433 6.433
6 C -0.294 4.294
7 C -0.056 4.056
8 C -0.218 4.218
9 C 0.119 3.881
10 C -0.470 4.470
11 H 0.104 0.896
12 C -0.142 4.142
13 N -0.367 5.367
14 Si 0.728 3.272
15 H -0.188 1.188
16 H -0.200 1.200
17 H -0.180 1.180
18 C -0.263 4.263
19 C -0.071 4.071
20 C 0.104 3.896
21 C -0.204 4.204
22 C -0.234 4.234
23 C 0.313 3.687
24 O -0.386 6.386
25 O -0.264 6.264
26 C -0.063 4.063
27 H 0.084 0.916
28 H 0.068 0.932
29 H 0.089 0.911
30 H 0.094 0.906
31 H 0.125 0.875
32 H 0.109 0.891
33 H 0.137 0.863
34 H 0.100 0.900
35 H 0.112 0.888
36 H 0.118 0.882
37 H 0.101 0.899
38 H 0.088 0.912
39 H 0.082 0.918
40 H 0.084 0.916
41 H 0.078 0.922
42 H 0.139 0.861
43 H 0.082 0.918
44 H 0.080 0.920
45 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -0.693 -1.981 -13.178 13.344
hybrid contribution 0.164 -0.781 0.199 0.822
sum -0.529 -2.761 -12.979 13.280
Atomic orbital electron populations
1.22445 0.96374 1.02989 1.01554 1.21983 0.93972 0.82587 1.04920
1.48060 1.67433 1.14108 1.04701 1.18767 0.73709 0.86212 0.82911
1.90513 1.49752 1.16731 1.86352 1.18645 1.00128 1.12923 0.97678
1.20266 0.95423 0.96513 0.93433 1.20957 0.99750 1.03703 0.97416
1.17684 0.90126 0.88556 0.91724 1.19840 1.09040 1.18150 0.99938
0.89562 1.26169 0.94912 0.96087 0.97052 1.69850 1.18767 1.21733
1.26329 0.86329 0.80349 0.81875 0.78597 1.18785 1.19978 1.18030
1.20509 0.99007 1.08376 0.98413 1.20602 0.95793 0.94507 0.96224
1.20257 0.99338 0.89373 0.80597 1.22091 0.96205 0.98793 1.03290
1.22530 0.93810 1.02006 1.05037 1.23866 0.77383 0.80066 0.87389
1.90646 1.37175 1.72261 1.38555 1.86657 1.56232 1.37569 1.45928
1.23298 1.03309 0.92539 0.87146 0.91605 0.93155 0.91105 0.90619
0.87466 0.89101 0.86300 0.89977 0.88756 0.88184 0.89900 0.91237
0.91796 0.91643 0.92192 0.86076 0.91830 0.91982 0.87928
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.35 8.51 37.16 0.32 -2.03 16
2 C 0.09 1.32 5.06 -4.04 -0.02 1.30 16
3 N -0.61 -10.18 2.26 -161.26 -0.36 -10.55 16
4 C 0.59 11.92 6.72 -12.42 -0.08 11.83 16
5 O -0.55 -12.17 13.43 5.29 0.07 -12.09 16
6 C -0.29 -6.38 4.92 -104.73 -0.52 -6.89 16
7 C -0.04 -0.87 9.65 -39.61 -0.38 -1.25 16
8 C -0.20 -4.95 8.80 -39.27 -0.35 -5.30 16
9 C 0.12 3.04 5.67 -106.80 -0.61 2.44 16
10 C -0.44 -10.82 8.98 -37.75 -0.34 -11.15 16
11 H 0.09 2.01 8.02 -52.49 -0.42 1.59 16
12 C 0.08 1.90 4.91 -17.31 -0.08 1.82 16
13 N -0.75 -17.71 11.14 55.56 0.62 -17.09 16
14 Si 0.91 16.83 29.66 -169.99 -5.04 11.79 16
15 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16
16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16
17 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16
18 C -0.24 -5.53 9.73 -39.27 -0.38 -5.91 16
19 C -0.05 -1.10 7.46 -39.61 -0.30 -1.40 16
20 C 0.19 2.90 0.91 -132.97 -0.12 2.78 16
21 C -0.15 -2.09 7.95 37.16 0.30 -1.79 16
22 C -0.18 -2.61 8.03 37.16 0.30 -2.31 16
23 C 0.47 6.80 5.43 36.01 0.20 6.99 16
24 O -0.50 -7.77 15.73 -18.74 -0.29 -8.06 16
25 O -0.35 -4.54 8.51 -39.27 -0.33 -4.87 16
26 C 0.03 0.28 10.56 101.05 1.07 1.35 16
27 H 0.06 0.94 7.15 -51.93 -0.37 0.57 16
28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.07 0.89 7.47 -51.93 -0.39 0.50 16
30 H 0.08 1.05 5.02 -51.93 -0.26 0.79 16
31 H 0.11 1.78 5.41 -51.93 -0.28 1.50 16
32 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16
33 H 0.12 3.02 5.84 -52.49 -0.31 2.71 16
34 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16
35 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16
36 H 0.10 1.83 4.38 -52.48 -0.23 1.60 16
37 H 0.08 1.27 7.41 -51.93 -0.38 0.89 16
38 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16
39 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16
40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
42 H 0.12 2.06 5.25 -51.93 -0.27 1.78 16
43 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16
44 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16
45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
LS Contribution 360.10 15.07 5.43 5.43
Total: -1.00 -27.73 360.10 -7.16 -34.90
By element:
Atomic # 1 Polarization: 16.32 SS G_CDS: -6.24 Total: 10.09 kcal
Atomic # 6 Polarization: -8.53 SS G_CDS: -1.00 Total: -9.54 kcal
Atomic # 7 Polarization: -27.89 SS G_CDS: 0.25 Total: -27.63 kcal
Atomic # 8 Polarization: -24.47 SS G_CDS: -0.56 Total: -25.03 kcal
Atomic # 14 Polarization: 16.83 SS G_CDS: -5.04 Total: 11.79 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -27.73 -7.16 -34.90 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000886426877.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.206 kcal
(2) G-P(sol) polarization free energy of solvation -27.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.940 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.102 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds