Wall clock time and date at job start Tue Mar 31 2020 12:37:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46507 * 109.46864 * 2 1
4 4 C 1.34774 * 119.99884 * 96.68723 * 3 2 1
5 5 O 1.21585 * 120.00098 * 184.58480 * 4 3 2
6 6 C 1.47641 * 120.00279 * 4.59400 * 4 3 2
7 7 C 1.40009 * 119.89857 * 130.55534 * 6 4 3
8 8 C 1.36316 * 120.10917 * 180.25767 * 7 6 4
9 9 C 1.40889 * 119.89189 * 359.52086 * 8 7 6
10 10 C 1.41105 * 120.10845 * 180.23334 * 9 8 7
11 11 H 1.07996 * 120.00374 * 191.75375 * 10 9 8
12 12 C 1.40227 * 119.99713 * 11.75598 * 10 9 8
13 13 N 1.30642 * 120.00058 * 32.99740 * 12 10 9
14 14 Si 1.86796 * 119.99812 * 212.99584 * 12 10 9
15 15 H 1.48502 * 109.47276 * 94.99969 * 14 12 10
16 16 H 1.48508 * 109.47269 * 214.99687 * 14 12 10
17 17 H 1.48502 * 109.47494 * 334.99829 * 14 12 10
18 18 C 1.40898 * 119.79052 * 0.49890 * 9 8 7
19 19 C 1.36311 * 119.89080 * 359.73252 * 18 9 8
20 20 C 1.46495 * 119.99912 * 276.68948 * 3 2 1
21 21 C 1.53005 * 109.47048 * 102.26452 * 20 3 2
22 22 C 1.53001 * 109.47132 * 222.26192 * 20 3 2
23 23 C 1.50699 * 109.47539 * 342.26766 * 20 3 2
24 24 O 1.20819 * 120.00386 * 126.25564 * 23 20 3
25 25 O 1.34234 * 119.99602 * 306.25613 * 23 20 3
26 26 C 1.45199 * 116.99861 * 179.97438 * 25 23 20
27 27 H 1.08995 * 109.47127 * 346.11121 * 1 2 3
28 28 H 1.08999 * 109.46541 * 106.10997 * 1 2 3
29 29 H 1.09000 * 109.46555 * 226.10828 * 1 2 3
30 30 H 1.08994 * 109.47107 * 240.00205 * 2 1 3
31 31 H 1.09002 * 109.47394 * 119.99660 * 2 1 3
32 32 H 1.07999 * 119.94930 * 359.97438 * 7 6 4
33 33 H 1.07998 * 120.05656 * 179.72229 * 8 7 6
34 34 H 0.97008 * 119.99870 * 179.97438 * 13 12 10
35 35 H 1.08000 * 120.05452 * 179.71316 * 18 9 8
36 36 H 1.08005 * 119.94838 * 179.97438 * 19 18 9
37 37 H 1.09000 * 109.46998 * 60.00196 * 21 20 3
38 38 H 1.08996 * 109.46971 * 179.97438 * 21 20 3
39 39 H 1.08995 * 109.47030 * 299.99812 * 21 20 3
40 40 H 1.09002 * 109.46942 * 60.00288 * 22 20 3
41 41 H 1.09006 * 109.47058 * 179.97438 * 22 20 3
42 42 H 1.08996 * 109.47065 * 300.00157 * 22 20 3
43 43 H 1.08993 * 109.47267 * 299.99936 * 26 25 23
44 44 H 1.08996 * 109.46924 * 60.00803 * 26 25 23
45 45 H 1.09000 * 109.46825 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.3711 1.9713 1.1593
5 8 2.6967 3.1427 1.1708
6 6 2.3623 1.1953 2.4152
7 6 3.4774 1.2243 3.2614
8 6 3.4759 0.5053 4.4195
9 6 2.3460 -0.2600 4.7694
10 6 2.3376 -1.0021 5.9695
11 1 1.5617 -1.7318 6.1479
12 6 3.3370 -0.7922 6.9305
13 7 3.8523 0.3980 7.0878
14 14 3.9313 -2.2143 7.9859
15 1 5.1433 -2.8137 7.3718
16 1 4.2598 -1.7176 9.3464
17 1 2.8635 -3.2421 8.0785
18 6 1.2263 -0.2865 3.9144
19 6 1.2390 0.4321 2.7561
20 6 2.1231 2.1211 -1.2601
21 6 0.9449 3.0896 -1.3824
22 6 3.4348 2.9085 -1.2816
23 6 2.0994 1.1529 -2.4146
24 8 1.2994 1.2980 -3.3084
25 8 2.9670 0.1293 -2.4500
26 6 2.8864 -0.7639 -3.5919
27 1 -0.3633 0.9976 0.2467
28 1 -0.3632 -0.2852 -0.9873
29 1 -0.3632 -0.7125 0.7406
30 1 1.8934 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8900
32 1 4.3419 1.8138 2.9939
33 1 4.3383 0.5248 5.0693
34 1 4.5434 0.5432 7.7529
35 1 0.3597 -0.8754 4.1762
36 1 0.3814 0.4121 2.0999
37 1 0.9621 3.7899 -0.5473
38 1 1.0231 3.6404 -2.3197
39 1 0.0105 2.5287 -1.3670
40 1 4.2742 2.2186 -1.1945
41 1 3.5130 3.4587 -2.2194
42 1 3.4519 3.6088 -0.4466
43 1 1.8962 -1.2179 -3.6289
44 1 3.0619 -0.1995 -4.5077
45 1 3.6411 -1.5446 -3.4965
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000886426877.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:15
Heat of formation + Delta-G solvation = -101.030666 kcal
Electronic energy + Delta-G solvation = -27949.158683 eV
Core-core repulsion = 24124.713371 eV
Total energy + Delta-G solvation = -3824.445312 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.38003 -40.90167 -39.05142 -37.82180 -37.19965 -35.90623 -34.53391 -31.94753
-31.19698 -30.79471 -29.04563 -28.22509 -27.68044 -25.36532 -24.03359 -23.62645
-22.84665 -21.59806 -20.20217 -19.41252 -18.84979 -18.15539 -17.93808 -17.39092
-17.09191 -16.57819 -16.23379 -15.90951 -15.48660 -15.15548 -14.93165 -14.68500
-14.46637 -14.36823 -14.08247 -13.82362 -13.81160 -13.73259 -13.46042 -13.35475
-13.10644 -13.00903 -12.83271 -12.81127 -12.72754 -12.60506 -12.32942 -12.26246
-12.06736 -11.83999 -11.68302 -11.57562 -11.30096 -10.91303 -10.35005 -9.79825
-9.52902 -9.41200 -8.88931 -6.38424 0.63527 0.80172 1.20937 1.37309
1.44912 1.51757 1.54802 1.90522 2.08090 2.15409 2.61361 3.40543
3.68562 3.70672 3.85032 3.94364 4.10426 4.25776 4.29219 4.31255
4.35005 4.43530 4.50799 4.57018 4.59641 4.67935 4.69186 4.74720
4.88047 4.96667 5.01388 5.02877 5.05166 5.18507 5.20091 5.25663
5.30948 5.34816 5.59582 5.62702 5.85897 6.03469 6.08167 6.23864
6.42755 6.50769 6.59080 6.81414 6.96516 7.31970 8.06457
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.021857 B = 0.003333 C = 0.003212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.734813 B = 8399.250577 C = 8715.656166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.084 3.916
3 N -0.598 5.598
4 C 0.589 3.411
5 O -0.576 6.576
6 C -0.295 4.295
7 C -0.047 4.047
8 C -0.221 4.221
9 C 0.096 3.904
10 C -0.474 4.474
11 H 0.090 0.910
12 C 0.046 3.954
13 N -0.780 5.780
14 Si 0.981 3.019
15 H -0.261 1.261
16 H -0.265 1.265
17 H -0.251 1.251
18 C -0.255 4.255
19 C -0.041 4.041
20 C 0.182 3.818
21 C -0.141 4.141
22 C -0.172 4.172
23 C 0.479 3.521
24 O -0.510 6.510
25 O -0.357 6.357
26 C 0.023 3.977
27 H 0.056 0.944
28 H 0.066 0.934
29 H 0.080 0.920
30 H 0.091 0.909
31 H 0.091 0.909
32 H 0.090 0.910
33 H 0.105 0.895
34 H 0.299 0.701
35 H 0.109 0.891
36 H 0.129 0.871
37 H 0.068 0.932
38 H 0.085 0.915
39 H 0.066 0.934
40 H 0.061 0.939
41 H 0.084 0.916
42 H 0.098 0.902
43 H 0.069 0.931
44 H 0.068 0.932
45 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.369 -4.210 -14.373 15.040
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.038 4.038
3 N -0.332 5.332
4 C 0.383 3.617
5 O -0.458 6.458
6 C -0.299 4.299
7 C -0.067 4.067
8 C -0.241 4.241
9 C 0.093 3.907
10 C -0.499 4.499
11 H 0.108 0.892
12 C -0.177 4.177
13 N -0.401 5.401
14 Si 0.800 3.200
15 H -0.186 1.186
16 H -0.190 1.190
17 H -0.174 1.174
18 C -0.275 4.275
19 C -0.060 4.060
20 C 0.097 3.903
21 C -0.199 4.199
22 C -0.229 4.229
23 C 0.321 3.679
24 O -0.397 6.397
25 O -0.273 6.273
26 C -0.070 4.070
27 H 0.075 0.925
28 H 0.085 0.915
29 H 0.099 0.901
30 H 0.109 0.891
31 H 0.109 0.891
32 H 0.108 0.892
33 H 0.123 0.877
34 H 0.110 0.890
35 H 0.127 0.873
36 H 0.147 0.853
37 H 0.087 0.913
38 H 0.103 0.897
39 H 0.085 0.915
40 H 0.080 0.920
41 H 0.103 0.897
42 H 0.117 0.883
43 H 0.087 0.913
44 H 0.086 0.914
45 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -1.287 -3.433 -14.563 15.017
hybrid contribution 0.353 -0.311 0.487 0.677
sum -0.934 -3.743 -14.076 14.595
Atomic orbital electron populations
1.22385 0.94730 1.02797 1.02976 1.22114 0.95278 0.81458 1.04902
1.47948 1.66150 1.14692 1.04435 1.18471 0.74079 0.85762 0.83399
1.90520 1.50862 1.17567 1.86836 1.18909 0.99831 1.12779 0.98428
1.20373 0.96230 0.96476 0.93578 1.20906 0.99840 1.05280 0.98035
1.18018 0.90797 0.89056 0.92815 1.20121 1.10450 1.18800 1.00549
0.89178 1.27039 0.94307 0.98382 0.97958 1.69866 1.19329 1.23669
1.27246 0.85206 0.79658 0.78200 0.76912 1.18585 1.18959 1.17389
1.20738 0.98933 1.09030 0.98754 1.20836 0.96172 0.93111 0.95844
1.20419 0.99899 0.89880 0.80142 1.22034 0.95895 0.98434 1.03496
1.22434 0.93551 1.01575 1.05367 1.23472 0.77434 0.80215 0.86730
1.90646 1.37679 1.72596 1.38816 1.86630 1.55584 1.37477 1.47577
1.23650 1.04709 0.92487 0.86114 0.92477 0.91462 0.90069 0.89079
0.89074 0.89196 0.87712 0.89003 0.87317 0.85298 0.91342 0.89656
0.91492 0.92029 0.89749 0.88314 0.91256 0.91365 0.85238
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.15 8.51 71.98 0.61 -3.53 16
2 C 0.08 2.39 5.06 86.38 0.44 2.83 16
3 N -0.60 -19.43 2.26 -782.37 -1.77 -21.20 16
4 C 0.59 23.84 6.72 86.73 0.58 24.42 16
5 O -0.58 -25.65 13.43 -3.98 -0.05 -25.70 16
6 C -0.30 -13.13 4.92 -19.93 -0.10 -13.23 16
7 C -0.05 -2.31 9.65 22.25 0.21 -2.09 16
8 C -0.22 -11.46 8.80 22.47 0.20 -11.26 16
9 C 0.10 4.91 5.67 -21.28 -0.12 4.79 16
10 C -0.47 -23.50 8.98 23.46 0.21 -23.29 16
11 H 0.09 4.24 8.02 -2.91 -0.02 4.22 16
12 C 0.05 2.11 4.91 85.35 0.42 2.53 16
13 N -0.78 -37.88 11.14 21.87 0.24 -37.64 16
14 Si 0.98 34.32 29.66 68.60 2.03 36.36 16
15 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16
16 H -0.27 -8.79 7.11 99.48 0.71 -8.08 16
17 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16
18 C -0.26 -11.62 9.73 22.47 0.22 -11.40 16
19 C -0.04 -1.71 7.46 22.25 0.17 -1.55 16
20 C 0.18 5.28 0.91 2.86 0.00 5.28 16
21 C -0.14 -3.81 7.95 71.98 0.57 -3.24 16
22 C -0.17 -4.92 8.03 71.98 0.58 -4.34 16
23 C 0.48 12.71 5.43 71.24 0.39 13.09 16
24 O -0.51 -14.48 15.73 21.98 0.35 -14.13 16
25 O -0.36 -8.42 8.51 -51.45 -0.44 -8.86 16
26 C 0.02 0.36 10.56 113.37 1.20 1.55 16
27 H 0.06 1.51 7.15 -2.39 -0.02 1.49 16
28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
29 H 0.08 1.82 7.47 -2.39 -0.02 1.80 16
30 H 0.09 2.31 5.02 -2.39 -0.01 2.30 16
31 H 0.09 2.91 5.41 -2.39 -0.01 2.90 16
32 H 0.09 4.26 8.06 -2.91 -0.02 4.24 16
33 H 0.11 5.61 5.84 -2.91 -0.02 5.59 16
34 H 0.30 12.85 8.29 -92.70 -0.77 12.08 16
35 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16
36 H 0.13 4.51 4.38 -2.91 -0.01 4.50 16
37 H 0.07 2.06 7.41 -2.39 -0.02 2.04 16
38 H 0.08 2.03 8.03 -2.39 -0.02 2.01 16
39 H 0.07 1.76 7.53 -2.39 -0.02 1.74 16
40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
41 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16
42 H 0.10 3.36 5.25 -2.39 -0.01 3.34 16
43 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16
44 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16
45 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16
Total: -1.00 -60.62 360.10 6.95 -53.67
By element:
Atomic # 1 Polarization: 35.94 SS G_CDS: 1.01 Total: 36.95 kcal
Atomic # 6 Polarization: -25.02 SS G_CDS: 5.58 Total: -19.45 kcal
Atomic # 7 Polarization: -57.32 SS G_CDS: -1.53 Total: -58.84 kcal
Atomic # 8 Polarization: -48.54 SS G_CDS: -0.15 Total: -48.69 kcal
Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.36 kcal
Total: -60.62 6.95 -53.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000886426877.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.363 kcal
(2) G-P(sol) polarization free energy of solvation -60.615 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.948 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.667 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds