Wall clock time and date at job start Tue Mar 31 2020 13:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45196 * 109.47122 * 2 1 4 4 C 1.34230 * 117.00187 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99695 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00130 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.46914 * 179.97438 * 6 4 3 8 8 C 1.38303 * 119.96379 * 269.72143 * 7 6 4 9 9 C 1.38265 * 120.13894 * 179.76667 * 8 7 6 10 10 C 1.38129 * 120.07000 * 0.51631 * 9 8 7 11 11 C 1.38848 * 119.93082 * 359.73776 * 10 9 8 12 12 N 1.39920 * 120.07375 * 180.02562 * 11 10 9 13 13 C 1.46501 * 120.00018 * 292.82210 * 12 11 10 14 14 C 1.34771 * 120.00245 * 112.81664 * 12 11 10 15 15 O 1.21288 * 119.99900 * 5.28191 * 14 12 11 16 16 C 1.50706 * 120.00398 * 185.28123 * 14 12 11 17 17 C 1.52996 * 109.47383 * 179.97438 * 16 14 12 18 18 C 1.50698 * 109.47293 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00277 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47011 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46521 * 120.00122 * 22 20 18 25 25 H 1.48500 * 109.46911 * 239.99794 * 22 20 18 26 26 C 1.38090 * 119.96452 * 90.00222 * 7 6 4 27 27 H 1.09000 * 109.47068 * 59.99966 * 1 2 3 28 28 H 1.09002 * 109.46769 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47007 * 299.99917 * 1 2 3 30 30 H 1.08999 * 109.47007 * 240.00083 * 2 1 3 31 31 H 1.09000 * 109.47068 * 120.00034 * 2 1 3 32 32 H 1.09001 * 109.46747 * 300.00014 * 6 4 3 33 33 H 1.08997 * 109.46819 * 59.99830 * 6 4 3 34 34 H 1.08000 * 119.92636 * 0.02692 * 8 7 6 35 35 H 1.08005 * 119.96191 * 180.25197 * 9 8 7 36 36 H 1.08006 * 120.03279 * 179.76504 * 10 9 8 37 37 H 1.08998 * 109.47649 * 89.99310 * 13 12 11 38 38 H 1.09001 * 109.47150 * 210.00036 * 13 12 11 39 39 H 1.09003 * 109.47100 * 329.99672 * 13 12 11 40 40 H 1.08998 * 109.46872 * 300.00278 * 16 14 12 41 41 H 1.09001 * 109.46985 * 59.99924 * 16 14 12 42 42 H 1.09004 * 109.46961 * 300.00192 * 17 16 14 43 43 H 1.09001 * 109.47118 * 60.00010 * 17 16 14 44 44 H 0.96996 * 119.99522 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.03722 * 359.95496 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 5.4257 2.8585 -0.0001 8 6 6.1159 2.8277 1.1980 9 6 7.4964 2.7504 1.2021 10 6 8.1911 2.7146 0.0088 11 6 7.5015 2.7507 -1.1957 12 7 8.2022 2.7140 -2.4063 13 6 9.0554 3.8403 -2.7932 14 6 8.0924 1.6425 -3.2163 15 8 7.3139 0.7533 -2.9435 16 6 8.9369 1.5490 -4.4610 17 6 8.6207 0.2444 -5.1951 18 6 9.4656 0.1507 -6.4394 19 1 10.1585 0.9427 -6.6826 20 6 9.3534 -0.9455 -7.2681 21 7 8.5092 -1.9097 -6.9722 22 14 10.4002 -1.0613 -8.8108 23 1 11.2627 0.1430 -8.9153 24 1 11.2524 -2.2754 -8.7406 25 1 9.5180 -1.1440 -10.0025 26 6 6.1144 2.8229 -1.1965 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5844 3.4700 -0.8895 33 1 3.5852 3.4690 0.8905 34 1 5.5751 2.8597 2.1323 35 1 8.0323 2.7224 2.1394 36 1 9.2697 2.6581 0.0127 37 1 10.0645 3.6789 -2.4141 38 1 9.0836 3.9182 -3.8801 39 1 8.6527 4.7622 -2.3734 40 1 8.7185 2.3951 -5.1125 41 1 9.9916 1.5646 -4.1865 42 1 8.8394 -0.6014 -4.5433 43 1 7.5660 0.2284 -5.4696 44 1 8.4300 -2.6808 -7.5554 45 1 5.5751 2.8509 -2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889465279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:33 Heat of formation + Delta-G solvation = -102.310158 kcal Electronic energy + Delta-G solvation = -26124.246823 eV Core-core repulsion = 22299.746029 eV Total energy + Delta-G solvation = -3824.500794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72982 -40.10735 -38.45941 -36.70477 -35.31678 -33.50662 -32.97413 -31.82451 -31.27693 -29.98015 -28.09325 -26.57781 -25.76056 -23.70740 -23.08068 -22.18885 -21.33655 -20.42850 -18.69862 -17.82030 -17.12979 -16.87503 -16.72931 -16.21913 -16.01636 -15.88158 -15.54449 -14.80512 -14.45254 -14.22876 -14.13318 -13.60442 -13.35296 -13.23019 -13.05146 -12.92930 -12.57344 -12.44740 -12.35720 -12.15902 -12.14704 -11.97044 -11.78712 -11.55960 -11.28646 -11.11746 -10.94166 -10.67758 -10.57622 -10.53569 -9.95539 -9.63875 -9.25693 -9.13099 -9.00124 -8.84456 -8.32532 -8.23968 -5.95140 -3.99817 1.17584 1.35997 2.16612 2.57586 3.16705 3.20709 3.33016 3.40085 3.43348 3.72211 4.38342 4.47642 4.68200 4.68925 4.74069 4.81154 4.98870 5.04356 5.07655 5.14255 5.21723 5.27361 5.38336 5.39705 5.46930 5.47826 5.54165 5.55661 5.67402 5.71634 5.72287 5.95267 6.19732 6.20870 6.29488 6.34645 6.42836 6.51130 6.64202 6.84882 7.18823 7.63176 7.70227 7.75427 7.86384 8.07878 8.38540 8.71923 9.08737 9.63691 11.15828 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.003005 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.533437 B = 9314.288895 C =11311.899612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.455 3.545 5 O -0.485 6.485 6 C -0.068 4.068 7 C -0.075 4.075 8 C -0.109 4.109 9 C -0.111 4.111 10 C -0.118 4.118 11 C 0.154 3.846 12 N -0.594 5.594 13 C 0.084 3.916 14 C 0.509 3.491 15 O -0.513 6.513 16 C -0.125 4.125 17 C 0.036 3.964 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.087 4.087 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 14.771 18.319 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.297 3.703 5 O -0.370 6.370 6 C -0.106 4.106 7 C -0.075 4.075 8 C -0.127 4.127 9 C -0.129 4.129 10 C -0.138 4.138 11 C 0.063 3.937 12 N -0.326 5.326 13 C -0.058 4.058 14 C 0.300 3.700 15 O -0.385 6.385 16 C -0.164 4.164 17 C -0.002 4.002 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.527 5.527 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.107 4.107 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.224 13.752 18.339 25.099 hybrid contribution 0.660 -0.341 -0.888 1.158 sum -9.564 13.411 17.451 23.997 Atomic orbital electron populations 1.21803 0.92637 1.03008 1.03372 1.23039 0.95241 0.80148 1.02922 1.86463 1.24625 1.32565 1.84485 1.23616 0.80570 0.92763 0.73391 1.90782 1.60148 1.42801 1.43277 1.20261 0.92164 0.91582 1.06548 1.19056 0.92906 1.02136 0.93432 1.20920 0.94405 1.00447 0.96948 1.20913 0.93985 1.00447 0.97576 1.21269 1.00260 1.00624 0.91643 1.17559 0.90570 0.99734 0.85817 1.45788 1.48010 1.19969 1.18875 1.21810 0.94063 0.87975 1.01946 1.21825 0.83281 0.79967 0.84916 1.90735 1.36734 1.38013 1.73032 1.21903 0.98384 1.04016 0.92144 1.18928 0.97587 0.89572 0.94097 1.21236 1.22677 1.05132 1.07393 0.92515 1.25037 0.95530 0.95781 0.98089 1.70019 1.35899 1.09029 1.37789 0.86531 0.80254 0.77965 0.83186 1.19736 1.21017 1.21017 1.21091 0.93537 0.98394 0.97683 0.91432 0.90215 0.91619 0.90925 0.91267 0.86771 0.86757 0.86090 0.85628 0.85760 0.92517 0.89970 0.91395 0.90071 0.90024 0.95793 0.95828 0.93000 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.36 -4.23 10.22 -39.26 -0.40 -4.63 16 4 C 0.46 6.01 7.95 36.01 0.29 6.30 16 5 O -0.48 -8.60 15.78 -18.75 -0.30 -8.89 16 6 C -0.07 -0.67 5.94 -29.04 -0.17 -0.84 16 7 C -0.07 -0.94 4.37 -104.65 -0.46 -1.40 16 8 C -0.11 -1.23 9.70 -39.55 -0.38 -1.61 16 9 C -0.11 -1.26 10.04 -39.61 -0.40 -1.66 16 10 C -0.12 -1.57 9.85 -39.40 -0.39 -1.96 16 11 C 0.15 2.39 4.82 -83.70 -0.40 1.99 16 12 N -0.59 -9.52 2.93 -120.82 -0.35 -9.87 16 13 C 0.08 0.95 10.10 59.85 0.60 1.55 16 14 C 0.51 10.56 7.55 -10.98 -0.08 10.47 16 15 O -0.51 -13.07 15.54 5.55 0.09 -12.99 16 16 C -0.12 -2.61 4.32 -27.88 -0.12 -2.73 16 17 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 18 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.82 13.29 55.43 0.74 -27.09 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.09 -1.33 8.96 -39.39 -0.35 -1.68 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.11 0.91 8.09 -51.93 -0.42 0.49 16 33 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.88 6.48 -51.93 -0.34 0.55 16 39 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.08 1.51 7.24 -51.93 -0.38 1.14 16 41 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -38.42 386.93 -8.21 -46.62 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.00 Total: -1.47 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.79 Total: -4.34 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.38 Total: -36.96 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.61 Total: -26.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.42 -8.21 -46.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889465279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.686 kcal (2) G-P(sol) polarization free energy of solvation -38.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds