Wall clock time and date at job start Tue Mar 31 2020 13:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45196 * 109.47122 * 2 1 4 4 C 1.34230 * 117.00187 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99695 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00130 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.46914 * 179.97438 * 6 4 3 8 8 C 1.38303 * 119.96379 * 269.72143 * 7 6 4 9 9 C 1.38265 * 120.13894 * 179.76667 * 8 7 6 10 10 C 1.38129 * 120.07000 * 0.51631 * 9 8 7 11 11 C 1.38848 * 119.93082 * 359.73776 * 10 9 8 12 12 N 1.39920 * 120.07375 * 180.02562 * 11 10 9 13 13 C 1.46501 * 120.00018 * 292.82210 * 12 11 10 14 14 C 1.34771 * 120.00245 * 112.81664 * 12 11 10 15 15 O 1.21288 * 119.99900 * 5.28191 * 14 12 11 16 16 C 1.50706 * 120.00398 * 185.28123 * 14 12 11 17 17 C 1.52996 * 109.47383 * 179.97438 * 16 14 12 18 18 C 1.50698 * 109.47293 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00277 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47011 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46521 * 120.00122 * 22 20 18 25 25 H 1.48500 * 109.46911 * 239.99794 * 22 20 18 26 26 C 1.38090 * 119.96452 * 90.00222 * 7 6 4 27 27 H 1.09000 * 109.47068 * 59.99966 * 1 2 3 28 28 H 1.09002 * 109.46769 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47007 * 299.99917 * 1 2 3 30 30 H 1.08999 * 109.47007 * 240.00083 * 2 1 3 31 31 H 1.09000 * 109.47068 * 120.00034 * 2 1 3 32 32 H 1.09001 * 109.46747 * 300.00014 * 6 4 3 33 33 H 1.08997 * 109.46819 * 59.99830 * 6 4 3 34 34 H 1.08000 * 119.92636 * 0.02692 * 8 7 6 35 35 H 1.08005 * 119.96191 * 180.25197 * 9 8 7 36 36 H 1.08006 * 120.03279 * 179.76504 * 10 9 8 37 37 H 1.08998 * 109.47649 * 89.99310 * 13 12 11 38 38 H 1.09001 * 109.47150 * 210.00036 * 13 12 11 39 39 H 1.09003 * 109.47100 * 329.99672 * 13 12 11 40 40 H 1.08998 * 109.46872 * 300.00278 * 16 14 12 41 41 H 1.09001 * 109.46985 * 59.99924 * 16 14 12 42 42 H 1.09004 * 109.46961 * 300.00192 * 17 16 14 43 43 H 1.09001 * 109.47118 * 60.00010 * 17 16 14 44 44 H 0.96996 * 119.99522 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.03722 * 359.95496 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 5.4257 2.8585 -0.0001 8 6 6.1159 2.8277 1.1980 9 6 7.4964 2.7504 1.2021 10 6 8.1911 2.7146 0.0088 11 6 7.5015 2.7507 -1.1957 12 7 8.2022 2.7140 -2.4063 13 6 9.0554 3.8403 -2.7932 14 6 8.0924 1.6425 -3.2163 15 8 7.3139 0.7533 -2.9435 16 6 8.9369 1.5490 -4.4610 17 6 8.6207 0.2444 -5.1951 18 6 9.4656 0.1507 -6.4394 19 1 10.1585 0.9427 -6.6826 20 6 9.3534 -0.9455 -7.2681 21 7 8.5092 -1.9097 -6.9722 22 14 10.4002 -1.0613 -8.8108 23 1 11.2627 0.1430 -8.9153 24 1 11.2524 -2.2754 -8.7406 25 1 9.5180 -1.1440 -10.0025 26 6 6.1144 2.8229 -1.1965 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5844 3.4700 -0.8895 33 1 3.5852 3.4690 0.8905 34 1 5.5751 2.8597 2.1323 35 1 8.0323 2.7224 2.1394 36 1 9.2697 2.6581 0.0127 37 1 10.0645 3.6789 -2.4141 38 1 9.0836 3.9182 -3.8801 39 1 8.6527 4.7622 -2.3734 40 1 8.7185 2.3951 -5.1125 41 1 9.9916 1.5646 -4.1865 42 1 8.8394 -0.6014 -4.5433 43 1 7.5660 0.2284 -5.4696 44 1 8.4300 -2.6808 -7.5554 45 1 5.5751 2.8509 -2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889465279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:32 Heat of formation + Delta-G solvation = -126.161653 kcal Electronic energy + Delta-G solvation = -26125.281102 eV Core-core repulsion = 22299.746029 eV Total energy + Delta-G solvation = -3825.535073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81161 -41.37015 -39.69404 -37.77681 -36.65678 -35.63612 -33.96109 -33.13086 -32.58141 -31.23604 -29.04012 -27.97435 -27.42466 -24.63806 -24.52304 -23.25542 -22.70939 -21.62829 -20.11379 -18.86867 -18.82268 -18.15107 -17.83641 -17.41919 -17.20889 -17.06602 -17.00709 -16.46651 -16.04809 -15.31284 -15.18739 -14.70003 -14.51874 -14.44868 -14.24573 -14.21998 -13.83171 -13.62124 -13.44576 -13.36724 -13.29216 -13.10455 -12.86749 -12.86468 -12.55829 -12.52388 -12.44080 -12.23899 -11.97001 -11.65327 -11.63027 -11.58991 -11.31917 -10.83695 -10.60654 -10.27645 -9.83848 -9.39885 -8.20163 -6.35100 0.18812 0.34070 1.13882 1.40663 1.42770 1.56101 1.56286 1.69208 1.96349 2.41490 2.74501 3.12799 3.48510 3.78317 3.88488 3.89815 3.94191 4.04541 4.08379 4.18970 4.28091 4.29971 4.35367 4.41447 4.44430 4.48681 4.56254 4.69791 4.74199 4.80736 4.84730 4.88560 4.98865 5.02945 5.11460 5.34602 5.42478 5.44840 5.45628 5.48802 5.56677 5.64262 5.81292 6.07618 6.13602 6.24666 6.69016 6.83416 7.19119 7.35548 8.93038 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.003005 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.533437 B = 9314.288895 C =11311.899612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.455 3.545 5 O -0.540 6.540 6 C -0.064 4.064 7 C -0.081 4.081 8 C -0.106 4.106 9 C -0.107 4.107 10 C -0.126 4.126 11 C 0.120 3.880 12 N -0.580 5.580 13 C 0.074 3.926 14 C 0.507 3.493 15 O -0.578 6.578 16 C -0.111 4.111 17 C 0.042 3.958 18 C -0.540 4.540 19 H 0.080 0.920 20 C -0.010 4.010 21 N -0.940 5.940 22 Si 0.977 3.023 23 H -0.249 1.249 24 H -0.281 1.281 25 H -0.280 1.280 26 C -0.114 4.114 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.107 0.893 42 H -0.022 1.022 43 H -0.021 1.021 44 H 0.263 0.737 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 17.540 19.434 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.300 3.700 5 O -0.430 6.430 6 C -0.101 4.101 7 C -0.081 4.081 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.145 4.145 11 C 0.029 3.971 12 N -0.310 5.310 13 C -0.066 4.066 14 C 0.298 3.702 15 O -0.456 6.456 16 C -0.150 4.150 17 C 0.005 3.995 18 C -0.578 4.578 19 H 0.098 0.902 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.801 3.199 23 H -0.173 1.173 24 H -0.207 1.207 25 H -0.206 1.206 26 C -0.134 4.134 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.149 0.851 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.125 0.875 42 H -0.004 1.004 43 H -0.003 1.003 44 H 0.071 0.929 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.244 16.621 19.480 27.224 hybrid contribution 0.286 -1.173 -1.121 1.647 sum -8.958 15.449 18.359 25.611 Atomic orbital electron populations 1.21808 0.89782 1.04337 1.04032 1.23251 0.97476 0.79549 1.01966 1.86479 1.23900 1.33229 1.83891 1.24342 0.80598 0.93505 0.71577 1.90768 1.61297 1.44787 1.46101 1.20445 0.90330 0.89816 1.09470 1.19362 0.94443 1.01300 0.93021 1.21392 0.94755 0.98566 0.97702 1.21366 0.94328 0.98638 0.98199 1.21477 1.01088 1.00563 0.91393 1.17867 0.91006 1.02007 0.86173 1.45654 1.47562 1.19440 1.18359 1.22178 0.94458 0.87214 1.02749 1.21719 0.82553 0.80522 0.85357 1.90707 1.39466 1.40835 1.74611 1.21658 0.99805 1.01142 0.92399 1.18700 0.94952 0.91665 0.94199 1.21721 1.22820 1.05789 1.07489 0.90203 1.26206 0.96917 0.95226 1.02339 1.70211 1.38135 1.09989 1.39645 0.85220 0.78234 0.78744 0.77714 1.17268 1.20676 1.20594 1.21131 0.93829 1.00340 0.98052 0.91341 0.88579 0.90293 0.93027 0.91256 0.85104 0.82301 0.82675 0.82192 0.84420 0.90357 0.89307 0.88875 0.87259 0.87478 1.00398 1.00256 0.92875 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.29 71.99 0.74 -1.16 16 2 C 0.05 1.09 6.19 71.99 0.45 1.53 16 3 O -0.36 -8.27 10.22 -51.42 -0.53 -8.80 16 4 C 0.46 12.13 7.95 71.24 0.57 12.69 16 5 O -0.54 -20.10 15.78 21.97 0.35 -19.75 16 6 C -0.06 -1.16 5.94 29.10 0.17 -0.99 16 7 C -0.08 -1.97 4.37 -19.88 -0.09 -2.05 16 8 C -0.11 -2.14 9.70 22.29 0.22 -1.92 16 9 C -0.11 -2.16 10.04 22.25 0.22 -1.94 16 10 C -0.13 -3.18 9.85 22.39 0.22 -2.96 16 11 C 0.12 3.75 4.82 38.15 0.18 3.93 16 12 N -0.58 -18.66 2.93 -654.56 -1.91 -20.58 16 13 C 0.07 1.52 10.10 127.77 1.29 2.81 16 14 C 0.51 21.95 7.55 87.66 0.66 22.61 16 15 O -0.58 -31.88 15.54 -3.05 -0.05 -31.93 16 16 C -0.11 -4.69 4.32 29.85 0.13 -4.56 16 17 C 0.04 2.47 4.26 29.85 0.13 2.60 16 18 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 19 H 0.08 4.18 7.74 -2.91 -0.02 4.15 16 20 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 21 N -0.94 -61.31 13.29 21.45 0.28 -61.02 16 22 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 23 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 C -0.11 -3.57 8.96 22.39 0.20 -3.37 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.13 1.95 8.09 -2.39 -0.02 1.93 16 33 H 0.16 1.44 8.08 -2.39 -0.02 1.42 16 34 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.70 6.48 -2.39 -0.02 1.68 16 39 H 0.09 1.46 8.05 -2.39 -0.02 1.44 16 40 H 0.11 3.98 7.24 -2.39 -0.02 3.97 16 41 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 42 H -0.02 -1.49 8.10 -2.39 -0.02 -1.51 16 43 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 44 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 45 H 0.10 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -91.79 386.93 6.93 -84.86 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.97 Total: 14.26 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.79 Total: -4.07 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.63 Total: -81.60 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -0.23 Total: -60.48 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -91.79 6.93 -84.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889465279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.298 kcal (2) G-P(sol) polarization free energy of solvation -91.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds