Wall clock time and date at job start Tue Mar 31 2020 13:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47333 * 2 1 4 4 C 1.34226 * 117.00090 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00038 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99814 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46617 * 85.00170 * 6 4 3 8 8 N 1.46497 * 109.47174 * 325.00304 * 6 4 3 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 6 4 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 6 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99854 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00129 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47118 * 90.00195 * 17 15 13 19 19 H 1.48507 * 109.46904 * 209.99852 * 17 15 13 20 20 H 1.48494 * 109.47201 * 330.00027 * 17 15 13 21 21 C 1.50699 * 109.46915 * 204.99854 * 6 4 3 22 22 C 1.38240 * 119.99545 * 119.73542 * 21 6 4 23 23 C 1.38229 * 119.99961 * 179.81010 * 22 21 6 24 24 C 1.38238 * 119.99725 * 0.39380 * 23 22 21 25 25 C 1.38236 * 120.00194 * 359.85606 * 24 23 22 26 26 C 1.38228 * 119.99804 * 359.95700 * 25 24 23 27 27 H 1.08994 * 109.47426 * 300.00045 * 1 2 3 28 28 H 1.09005 * 109.47053 * 59.99783 * 1 2 3 29 29 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47041 * 240.00035 * 2 1 3 31 31 H 1.08998 * 109.47092 * 119.99878 * 2 1 3 32 32 H 1.08995 * 109.47357 * 300.00167 * 7 6 4 33 33 H 1.09003 * 109.47092 * 60.00058 * 7 6 4 34 34 H 1.09001 * 109.46873 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00580 * 0.02562 * 8 6 4 36 36 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 37 37 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 38 38 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 39 39 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 40 40 H 0.96999 * 120.00128 * 179.97438 * 16 15 13 41 41 H 1.07997 * 119.99933 * 359.97438 * 22 21 6 42 42 H 1.08002 * 120.00606 * 180.22991 * 23 22 21 43 43 H 1.08009 * 119.99998 * 179.83743 * 24 23 22 44 44 H 1.08007 * 119.99930 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.99939 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.9988 3.4575 1.4368 8 7 3.0622 3.8207 -0.7931 9 6 3.3821 5.1223 -0.9345 10 8 4.3809 5.5622 -0.4055 11 6 2.5023 6.0295 -1.7554 12 6 3.0898 7.4423 -1.7601 13 6 2.2097 8.3496 -2.5805 14 1 1.3205 7.9578 -3.0518 15 6 2.5397 9.6800 -2.7293 16 7 1.7719 10.4718 -3.4457 17 14 4.0781 10.3575 -1.9146 18 1 5.2294 10.2246 -2.8431 19 1 3.8725 11.7904 -1.5831 20 1 4.3554 9.5963 -0.6702 21 6 5.3029 2.9090 -0.5998 22 6 5.5795 3.6494 -1.7340 23 6 6.8483 3.6265 -2.2819 24 6 7.8385 2.8569 -1.7004 25 6 7.5606 2.1125 -0.5691 26 6 6.2928 2.1385 -0.0190 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9991 3.4779 1.8706 33 1 4.6375 2.8003 2.0269 34 1 4.4158 4.4646 1.4365 35 1 2.2632 3.4690 -1.2159 36 1 2.4480 5.6553 -2.7778 37 1 1.5018 6.0536 -1.3237 38 1 3.1442 7.8164 -0.7377 39 1 4.0904 7.4182 -2.1918 40 1 2.0039 11.4078 -3.5501 41 1 4.8049 4.2477 -2.1905 42 1 7.0655 4.2077 -3.1659 43 1 8.8293 2.8369 -2.1300 44 1 8.3341 1.5109 -0.1150 45 1 6.0755 1.5566 0.8645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895259971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:49 Heat of formation + Delta-G solvation = -92.183409 kcal Electronic energy + Delta-G solvation = -27492.293182 eV Core-core repulsion = 23668.231516 eV Total energy + Delta-G solvation = -3824.061666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48341 -39.88163 -38.52906 -36.96946 -35.52469 -33.51758 -32.08950 -31.99740 -31.09311 -30.61085 -29.39196 -26.35051 -25.36738 -23.58917 -22.49578 -22.25484 -21.56809 -20.17940 -19.67148 -18.21779 -17.49624 -17.10022 -16.92951 -16.62979 -15.83258 -15.51835 -15.04721 -14.87858 -14.43327 -14.12828 -14.03282 -13.77902 -13.57038 -13.28820 -13.23883 -13.08649 -12.71447 -12.57995 -12.41544 -12.24780 -12.22826 -11.93906 -11.92182 -11.44656 -11.31357 -10.99861 -10.91635 -10.86740 -10.61131 -10.19008 -10.07413 -9.79495 -9.28044 -9.20141 -9.17707 -8.74436 -8.66640 -8.52084 -6.04280 -4.03276 1.29769 1.54295 1.79698 2.29541 2.96596 3.18447 3.36915 3.43929 3.54135 3.85802 4.27719 4.45605 4.49557 4.57897 4.62785 4.80438 4.91000 4.99737 5.09236 5.17782 5.28722 5.31303 5.33694 5.43475 5.46545 5.53231 5.61928 5.63286 5.69642 5.97283 6.00829 6.04621 6.06433 6.09140 6.16025 6.30673 6.50776 6.59949 6.63757 6.69015 7.05517 7.33084 7.38247 7.40469 7.61845 7.76947 8.45557 8.54898 8.98739 9.58629 11.08521 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.004042 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.263490 B = 6925.576320 C = 8598.222527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.470 3.530 5 O -0.488 6.488 6 C 0.238 3.762 7 C -0.160 4.160 8 N -0.734 5.734 9 C 0.512 3.488 10 O -0.521 6.521 11 C -0.122 4.122 12 C 0.003 3.997 13 C -0.525 4.525 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.903 5.903 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.261 1.261 21 C -0.092 4.092 22 C -0.074 4.074 23 C -0.126 4.126 24 C -0.112 4.112 25 C -0.132 4.132 26 C -0.082 4.082 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.408 0.592 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.024 0.976 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -22.960 7.468 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.311 3.689 5 O -0.373 6.373 6 C 0.150 3.850 7 C -0.218 4.218 8 N -0.391 5.391 9 C 0.302 3.698 10 O -0.396 6.396 11 C -0.162 4.162 12 C -0.035 4.035 13 C -0.563 4.563 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.542 5.542 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.185 1.185 21 C -0.093 4.093 22 C -0.092 4.092 23 C -0.144 4.144 24 C -0.130 4.130 25 C -0.150 4.150 26 C -0.101 4.101 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.244 0.756 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.817 -22.771 7.796 24.369 hybrid contribution 0.352 0.076 0.133 0.384 sum 4.169 -22.695 7.929 24.399 Atomic orbital electron populations 1.21820 0.92257 1.03069 1.03916 1.23099 0.95640 0.79799 1.02702 1.86510 1.23941 1.32829 1.83601 1.23504 0.80935 0.91962 0.72541 1.90687 1.60324 1.42030 1.44305 1.18765 0.88289 0.83358 0.94618 1.22278 1.03392 1.04921 0.91188 1.46282 1.28575 1.09609 1.54626 1.21547 0.86426 0.81127 0.80734 1.90695 1.26724 1.74815 1.47321 1.21721 0.98879 0.96701 0.98875 1.19370 0.96456 0.89751 0.97931 1.21098 1.10288 0.93620 1.31330 0.90922 1.24962 0.96598 0.96934 0.94659 1.69910 1.38366 1.05738 1.40173 0.86810 0.83728 0.78005 0.81090 1.20262 1.21480 1.18495 1.19389 0.93138 0.99932 0.96854 1.21098 0.97358 0.96413 0.94316 1.21125 0.93195 0.99521 1.00547 1.21163 0.99034 0.96780 0.96065 1.21018 0.96519 1.00457 0.96994 1.20856 0.92463 0.97163 0.99586 0.91285 0.91136 0.90173 0.91050 0.91130 0.91111 0.91218 0.87824 0.75597 0.89500 0.89249 0.95723 0.96226 0.92709 0.85799 0.85903 0.86253 0.86176 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.35 -3.71 9.43 -39.25 -0.37 -4.08 16 4 C 0.47 5.82 6.73 36.01 0.24 6.07 16 5 O -0.49 -6.80 14.31 -18.75 -0.27 -7.07 16 6 C 0.24 3.17 0.85 -134.12 -0.11 3.05 16 7 C -0.16 -2.02 8.20 37.16 0.30 -1.72 16 8 N -0.73 -9.78 4.55 -49.76 -0.23 -10.01 16 9 C 0.51 8.61 5.14 -10.98 -0.06 8.55 16 10 O -0.52 -10.38 12.01 5.55 0.07 -10.31 16 11 C -0.12 -2.22 5.64 -27.88 -0.16 -2.38 16 12 C 0.00 0.07 3.33 -27.88 -0.09 -0.03 16 13 C -0.53 -14.66 9.66 -34.44 -0.33 -14.99 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 17 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 21 C -0.09 -1.35 4.15 -104.62 -0.43 -1.78 16 22 C -0.07 -1.15 7.70 -39.58 -0.30 -1.46 16 23 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.11 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.13 -1.64 10.05 -39.59 -0.40 -2.03 16 26 C -0.08 -1.12 7.89 -39.59 -0.31 -1.43 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.77 7.39 -51.93 -0.38 0.39 16 34 H 0.10 1.57 6.17 -51.93 -0.32 1.25 16 35 H 0.41 4.51 7.91 -40.82 -0.32 4.19 16 36 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 39 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 41 H 0.12 2.03 5.12 -52.49 -0.27 1.76 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.12 1.51 6.89 -52.48 -0.36 1.15 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -33.71 367.63 -7.75 -41.46 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.66 Total: 3.78 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.94 Total: -10.00 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.55 Total: -36.89 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.57 Total: -21.45 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.71 -7.75 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895259971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.727 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds