Wall clock time and date at job start Tue Mar 31 2020 13:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47333 * 2 1 4 4 C 1.34226 * 117.00090 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00038 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99814 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46617 * 85.00170 * 6 4 3 8 8 N 1.46497 * 109.47174 * 325.00304 * 6 4 3 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 6 4 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 6 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99854 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00129 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47118 * 90.00195 * 17 15 13 19 19 H 1.48507 * 109.46904 * 209.99852 * 17 15 13 20 20 H 1.48494 * 109.47201 * 330.00027 * 17 15 13 21 21 C 1.50699 * 109.46915 * 204.99854 * 6 4 3 22 22 C 1.38240 * 119.99545 * 119.73542 * 21 6 4 23 23 C 1.38229 * 119.99961 * 179.81010 * 22 21 6 24 24 C 1.38238 * 119.99725 * 0.39380 * 23 22 21 25 25 C 1.38236 * 120.00194 * 359.85606 * 24 23 22 26 26 C 1.38228 * 119.99804 * 359.95700 * 25 24 23 27 27 H 1.08994 * 109.47426 * 300.00045 * 1 2 3 28 28 H 1.09005 * 109.47053 * 59.99783 * 1 2 3 29 29 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47041 * 240.00035 * 2 1 3 31 31 H 1.08998 * 109.47092 * 119.99878 * 2 1 3 32 32 H 1.08995 * 109.47357 * 300.00167 * 7 6 4 33 33 H 1.09003 * 109.47092 * 60.00058 * 7 6 4 34 34 H 1.09001 * 109.46873 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00580 * 0.02562 * 8 6 4 36 36 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 37 37 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 38 38 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 39 39 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 40 40 H 0.96999 * 120.00128 * 179.97438 * 16 15 13 41 41 H 1.07997 * 119.99933 * 359.97438 * 22 21 6 42 42 H 1.08002 * 120.00606 * 180.22991 * 23 22 21 43 43 H 1.08009 * 119.99998 * 179.83743 * 24 23 22 44 44 H 1.08007 * 119.99930 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.99939 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.9988 3.4575 1.4368 8 7 3.0622 3.8207 -0.7931 9 6 3.3821 5.1223 -0.9345 10 8 4.3809 5.5622 -0.4055 11 6 2.5023 6.0295 -1.7554 12 6 3.0898 7.4423 -1.7601 13 6 2.2097 8.3496 -2.5805 14 1 1.3205 7.9578 -3.0518 15 6 2.5397 9.6800 -2.7293 16 7 1.7719 10.4718 -3.4457 17 14 4.0781 10.3575 -1.9146 18 1 5.2294 10.2246 -2.8431 19 1 3.8725 11.7904 -1.5831 20 1 4.3554 9.5963 -0.6702 21 6 5.3029 2.9090 -0.5998 22 6 5.5795 3.6494 -1.7340 23 6 6.8483 3.6265 -2.2819 24 6 7.8385 2.8569 -1.7004 25 6 7.5606 2.1125 -0.5691 26 6 6.2928 2.1385 -0.0190 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9991 3.4779 1.8706 33 1 4.6375 2.8003 2.0269 34 1 4.4158 4.4646 1.4365 35 1 2.2632 3.4690 -1.2159 36 1 2.4480 5.6553 -2.7778 37 1 1.5018 6.0536 -1.3237 38 1 3.1442 7.8164 -0.7377 39 1 4.0904 7.4182 -2.1918 40 1 2.0039 11.4078 -3.5501 41 1 4.8049 4.2477 -2.1905 42 1 7.0655 4.2077 -3.1659 43 1 8.8293 2.8369 -2.1300 44 1 8.3341 1.5109 -0.1150 45 1 6.0755 1.5566 0.8645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895259971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:48 Heat of formation + Delta-G solvation = -112.360199 kcal Electronic energy + Delta-G solvation = -27493.168113 eV Core-core repulsion = 23668.231516 eV Total energy + Delta-G solvation = -3824.936597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52152 -40.97877 -39.65566 -37.86371 -36.71617 -35.48567 -33.60880 -32.65432 -32.59416 -31.70068 -30.44191 -28.04633 -26.49826 -24.40578 -23.54481 -23.35767 -22.99867 -21.42130 -20.93108 -19.38455 -19.05867 -18.25712 -18.02118 -17.74228 -17.08526 -16.69132 -16.26149 -16.18942 -15.84338 -15.43802 -15.11976 -14.90512 -14.66740 -14.60323 -14.51958 -14.28597 -13.94494 -13.64735 -13.46085 -13.33866 -13.30916 -13.07118 -12.95032 -12.82894 -12.52564 -12.32898 -12.06309 -11.96712 -11.92736 -11.74908 -11.62625 -11.56427 -11.36614 -10.75993 -10.66151 -10.37175 -9.78852 -9.70854 -8.29266 -6.31796 0.28873 0.49930 0.81790 1.34783 1.37187 1.41698 1.51543 1.63751 2.01291 2.36581 2.84251 3.07047 3.30415 3.54063 3.74873 3.90809 4.01545 4.05632 4.10671 4.11321 4.23644 4.34278 4.39022 4.47654 4.50565 4.54150 4.61913 4.66794 4.78933 4.94380 4.98252 5.00689 5.05946 5.07540 5.12004 5.19798 5.35811 5.39231 5.48140 5.50995 5.58017 5.62006 5.63997 6.05744 6.25686 6.41902 6.49982 6.75098 7.23255 7.33525 8.86486 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.004042 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.263490 B = 6925.576320 C = 8598.222527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.478 3.522 5 O -0.504 6.504 6 C 0.235 3.765 7 C -0.156 4.156 8 N -0.716 5.716 9 C 0.523 3.477 10 O -0.553 6.553 11 C -0.117 4.117 12 C 0.008 3.992 13 C -0.527 4.527 14 H 0.050 0.950 15 C 0.015 3.985 16 N -0.945 5.945 17 Si 0.937 3.063 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.259 1.259 21 C -0.104 4.104 22 C -0.100 4.100 23 C -0.142 4.142 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.092 4.092 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.420 0.580 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -24.933 8.512 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.268 6.268 4 C 0.320 3.680 5 O -0.390 6.390 6 C 0.147 3.853 7 C -0.214 4.214 8 N -0.373 5.373 9 C 0.312 3.688 10 O -0.430 6.430 11 C -0.156 4.156 12 C -0.030 4.030 13 C -0.565 4.565 14 H 0.068 0.932 15 C -0.183 4.183 16 N -0.585 5.585 17 Si 0.761 3.239 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.160 4.160 24 C -0.131 4.131 25 C -0.149 4.149 26 C -0.111 4.111 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.258 0.742 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.545 -24.783 8.836 26.701 hybrid contribution 0.049 0.589 -0.225 0.632 sum 4.594 -24.194 8.611 26.089 Atomic orbital electron populations 1.21846 0.90404 1.04449 1.03855 1.23401 0.97041 0.78460 1.03025 1.86505 1.22681 1.34554 1.83057 1.23178 0.81476 0.91140 0.72238 1.90678 1.60863 1.42255 1.45223 1.18823 0.87898 0.83875 0.94698 1.22225 1.04326 1.03726 0.91102 1.45970 1.28779 1.08495 1.54025 1.21057 0.85581 0.81949 0.80196 1.90691 1.27937 1.75676 1.48694 1.21532 0.99502 0.94124 1.00471 1.19200 0.95421 0.92296 0.96074 1.21438 1.09891 0.94269 1.30921 0.93205 1.25776 0.99549 0.97555 0.95419 1.70026 1.40309 1.06258 1.41950 0.85853 0.80256 0.77564 0.80182 1.19541 1.20652 1.18289 1.19552 0.94049 1.00152 0.96808 1.21125 0.97831 0.97477 0.95425 1.21356 0.93316 1.00230 1.01116 1.21495 0.99822 0.95870 0.95939 1.21420 0.96769 1.00069 0.96635 1.21079 0.92826 0.97147 1.00012 0.91248 0.91255 0.88072 0.90990 0.90617 0.89840 0.89677 0.90296 0.74187 0.88064 0.87697 0.96875 0.97144 0.92465 0.87343 0.85314 0.83486 0.83247 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 71.98 0.74 -0.64 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.35 -6.75 9.43 -51.38 -0.48 -7.24 16 4 C 0.48 11.12 6.73 71.24 0.48 11.60 16 5 O -0.50 -13.22 14.31 21.96 0.31 -12.91 16 6 C 0.24 6.01 0.85 2.11 0.00 6.01 16 7 C -0.16 -3.77 8.20 71.98 0.59 -3.18 16 8 N -0.72 -18.44 4.55 -429.75 -1.95 -20.40 16 9 C 0.52 17.37 5.14 87.66 0.45 17.82 16 10 O -0.55 -22.09 12.01 -3.04 -0.04 -22.13 16 11 C -0.12 -4.19 5.64 29.85 0.17 -4.03 16 12 C 0.01 0.39 3.33 29.85 0.10 0.49 16 13 C -0.53 -29.80 9.66 25.60 0.25 -29.56 16 14 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 15 C 0.01 0.86 5.47 84.65 0.46 1.32 16 16 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 17 Si 0.94 46.22 27.47 68.60 1.88 48.11 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 20 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 21 C -0.10 -2.99 4.15 -19.87 -0.08 -3.07 16 22 C -0.10 -3.13 7.70 22.27 0.17 -2.96 16 23 C -0.14 -3.97 10.05 22.27 0.22 -3.75 16 24 C -0.11 -2.64 10.05 22.27 0.22 -2.41 16 25 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 26 C -0.09 -2.36 7.89 22.27 0.18 -2.19 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 1.02 8.13 -2.38 -0.02 1.00 16 31 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.75 7.39 -2.39 -0.02 1.74 16 34 H 0.08 2.36 6.17 -2.39 -0.01 2.35 16 35 H 0.42 8.70 7.91 -92.71 -0.73 7.97 16 36 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 37 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.01 0.65 7.16 -2.39 -0.02 0.63 16 39 H 0.01 0.51 7.53 -2.39 -0.02 0.49 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.11 3.62 5.12 -2.91 -0.01 3.60 16 42 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 43 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 44 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.13 3.02 6.89 -2.91 -0.02 3.00 16 Total: -1.00 -72.96 367.63 4.85 -68.10 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.21 Total: 20.99 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.62 Total: -16.09 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -1.66 Total: -78.84 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.21 Total: -42.27 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.88 Total: 48.11 kcal Total: -72.96 4.85 -68.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895259971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.259 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds