Wall clock time and date at job start Tue Mar 31 2020 12:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20754 * 120.00237 * 2 1 4 4 C 1.50700 * 119.99470 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46711 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47206 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47580 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47229 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47058 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00532 * 180.02562 * 9 8 7 11 11 O 1.21596 * 119.99483 * 0.02562 * 10 9 8 12 12 C 1.47529 * 120.00576 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.19410 * 0.02562 * 12 10 9 14 14 C 1.37835 * 119.91853 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.31903 * 0.02562 * 14 13 12 16 16 C 1.38022 * 120.40696 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.06839 * 359.95623 * 16 15 14 18 18 O 1.35527 * 120.16025 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99627 * 354.39561 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.06815 * 19 18 17 21 21 C 1.38705 * 119.99676 * 185.06799 * 19 18 17 22 22 N 1.31514 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47501 * 60.00015 * 23 21 19 25 25 H 1.48510 * 109.46856 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47250 * 299.99489 * 23 21 19 27 27 H 1.08990 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47221 * 300.00796 * 1 2 3 29 29 H 1.09003 * 109.46749 * 59.99971 * 1 2 3 30 30 H 1.08999 * 109.46750 * 60.00569 * 4 2 1 31 31 H 1.08995 * 109.47367 * 300.00008 * 4 2 1 32 32 H 1.08991 * 109.47416 * 60.00328 * 5 4 2 33 33 H 1.08999 * 109.47480 * 299.99967 * 5 4 2 34 34 H 1.08996 * 109.47548 * 59.99442 * 6 5 4 35 35 H 1.09003 * 109.46871 * 300.00226 * 6 5 4 36 36 H 1.09004 * 109.46986 * 59.99478 * 7 6 5 37 37 H 1.09000 * 109.46715 * 300.00025 * 7 6 5 38 38 H 1.08999 * 109.46796 * 60.00185 * 8 7 6 39 39 H 1.08995 * 109.47178 * 299.99712 * 8 7 6 40 40 H 0.97003 * 120.00039 * 0.02562 * 9 8 7 41 41 H 1.07997 * 120.04248 * 0.26955 * 13 12 10 42 42 H 1.07992 * 119.83718 * 179.97438 * 14 13 12 43 43 H 1.08000 * 119.79251 * 179.97438 * 15 14 13 44 44 H 1.07996 * 119.96390 * 179.97438 * 16 15 14 45 45 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5297 -2.3507 0.0011 7 6 6.0339 -2.0712 0.0009 8 6 6.7988 -3.3962 0.0015 9 7 8.2392 -3.1286 0.0008 10 6 9.1150 -4.1530 0.0006 11 8 8.7096 -5.2994 0.0006 12 6 10.5655 -3.8835 -0.0007 13 6 11.0356 -2.5683 -0.0012 14 6 12.3919 -2.3231 -0.0019 15 6 13.2932 -3.3757 -0.0026 16 6 12.8432 -4.6805 -0.0032 17 6 11.4806 -4.9465 -0.0021 18 8 11.0368 -6.2270 -0.0021 19 6 11.9659 -7.1967 -0.1205 20 1 13.0152 -6.9413 -0.1274 21 6 11.5740 -8.5225 -0.2335 22 7 10.2962 -8.8335 -0.2246 23 14 12.8614 -9.8661 -0.3969 24 1 13.7444 -9.8536 0.7970 25 1 12.1887 -11.1860 -0.5018 26 1 13.6743 -9.6272 -1.6164 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9971 -1.8770 -0.8892 31 1 1.9971 -1.8763 0.8908 32 1 4.0277 -0.4540 0.8910 33 1 4.0284 -0.4543 -0.8889 34 1 4.2666 -2.9221 -0.8890 35 1 4.2660 -2.9224 0.8908 36 1 6.2973 -1.4996 0.8909 37 1 6.2972 -1.4997 -0.8891 38 1 6.5355 -3.9681 -0.8882 39 1 6.5355 -3.9674 0.8917 40 1 8.5626 -2.2141 0.0004 41 1 10.3372 -1.7445 0.0037 42 1 12.7540 -1.3057 -0.0028 43 1 14.3541 -3.1738 -0.0036 44 1 13.5519 -5.4955 -0.0042 45 1 10.0222 -9.7606 -0.3040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909087524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:49 Heat of formation + Delta-G solvation = -119.629860 kcal Electronic energy + Delta-G solvation = -25247.918607 eV Core-core repulsion = 21422.666774 eV Total energy + Delta-G solvation = -3825.251833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27406 -40.45974 -39.83590 -38.03233 -37.24055 -35.27284 -34.32253 -32.86441 -31.84001 -30.60121 -30.51965 -27.57634 -27.10551 -24.67151 -23.48123 -22.73944 -22.18289 -21.28111 -20.39463 -19.84641 -19.18578 -17.81803 -17.15210 -17.08168 -16.56860 -16.46627 -16.33495 -15.93602 -15.88364 -15.80166 -15.67840 -15.30651 -15.20991 -14.44775 -14.35938 -14.21726 -13.77735 -13.54860 -13.27962 -13.26420 -12.98702 -12.88116 -12.85663 -12.68586 -12.50232 -12.37472 -12.16845 -12.10161 -11.99602 -11.96433 -11.43476 -11.43267 -10.82316 -10.65277 -10.48343 -10.10132 -9.77614 -9.03725 -8.44250 -6.15432 0.12393 0.72716 1.06110 1.32322 1.45518 1.50338 2.10044 2.16348 2.30041 2.87841 3.19027 3.22708 3.46981 3.86371 3.91868 3.97922 4.02257 4.08959 4.24472 4.25163 4.30261 4.47439 4.53194 4.58586 4.59667 4.64668 4.72462 4.73621 4.88165 4.90368 4.97491 4.99191 5.04763 5.07524 5.13826 5.20288 5.23498 5.38999 5.46664 5.48313 5.58009 5.61461 5.69502 5.96436 6.17081 6.63029 6.71225 6.94706 7.49258 7.80623 8.76201 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002152 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.732890 B =13009.888405 C =14595.138319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.353 3.647 3 O -0.511 6.511 4 C -0.174 4.174 5 C -0.107 4.107 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.121 3.879 9 N -0.720 5.720 10 C 0.545 3.455 11 O -0.571 6.571 12 C -0.247 4.247 13 C -0.030 4.030 14 C -0.201 4.201 15 C -0.040 4.040 16 C -0.258 4.258 17 C 0.148 3.852 18 O -0.189 6.189 19 C -0.429 4.429 20 H 0.107 0.893 21 C -0.023 4.023 22 N -0.905 5.905 23 Si 1.023 2.977 24 H -0.254 1.254 25 H -0.273 1.273 26 H -0.254 1.254 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.411 0.589 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.124 0.876 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.841 18.156 0.209 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.233 3.767 3 O -0.389 6.389 4 C -0.211 4.211 5 C -0.145 4.145 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.002 4.002 9 N -0.375 5.375 10 C 0.335 3.665 11 O -0.450 6.450 12 C -0.252 4.252 13 C -0.049 4.049 14 C -0.219 4.219 15 C -0.058 4.058 16 C -0.277 4.277 17 C 0.093 3.907 18 O -0.091 6.091 19 C -0.505 4.505 20 H 0.124 0.876 21 C -0.223 4.223 22 N -0.541 5.541 23 Si 0.841 3.159 24 H -0.178 1.178 25 H -0.198 1.198 26 H -0.178 1.178 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.249 0.751 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.142 0.858 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.232 17.579 0.218 21.417 hybrid contribution 0.495 -0.809 -0.045 0.950 sum -11.737 16.770 0.172 20.470 Atomic orbital electron populations 1.22308 0.92255 1.06412 1.05013 1.25274 0.93412 0.90101 0.67901 1.90410 1.73115 1.36966 1.38403 1.22275 0.95183 0.97051 1.06630 1.21332 0.94099 0.96776 1.02312 1.21483 0.92945 0.97543 1.03134 1.21720 0.95350 0.94644 1.03743 1.21347 0.79243 0.98875 1.00746 1.45691 1.06174 1.08954 1.76670 1.18573 0.87050 0.84801 0.76063 1.90923 1.80483 1.23226 1.50387 1.19330 0.91275 0.93777 1.20784 1.21313 0.97344 0.92769 0.93430 1.21184 0.92066 1.00232 1.08459 1.21439 1.01312 0.90680 0.92382 1.21307 0.93771 0.99413 1.13241 1.20099 0.93534 0.85597 0.91478 1.84183 1.36125 1.11216 1.77611 1.22008 0.89195 0.86020 1.53244 0.87596 1.26786 0.99777 1.00133 0.95560 1.70316 1.17477 1.19711 1.46611 0.84612 0.76167 0.75031 0.80074 1.17766 1.19762 1.17837 0.87528 0.88735 0.88740 0.86332 0.86318 0.92384 0.92414 0.91150 0.91108 0.90231 0.90268 0.93541 0.93451 0.75061 0.82245 0.81818 0.82799 0.85843 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 10.33 71.24 0.74 -0.54 16 2 C 0.35 4.65 7.27 29.10 0.21 4.86 16 3 O -0.51 -11.55 16.72 -1.43 -0.02 -11.57 16 4 C -0.17 -1.69 5.55 29.85 0.17 -1.53 16 5 C -0.11 -1.55 4.50 30.59 0.14 -1.41 16 6 C -0.11 -1.74 5.21 30.59 0.16 -1.58 16 7 C -0.12 -2.14 5.33 30.59 0.16 -1.98 16 8 C 0.12 3.50 5.67 86.38 0.49 3.99 16 9 N -0.72 -23.27 5.51 -466.29 -2.57 -25.84 16 10 C 0.55 25.36 7.76 86.69 0.67 26.03 16 11 O -0.57 -34.41 15.17 16.88 0.26 -34.15 16 12 C -0.25 -10.95 5.89 -19.99 -0.12 -11.07 16 13 C -0.03 -0.93 9.54 22.52 0.21 -0.71 16 14 C -0.20 -5.46 10.03 22.25 0.22 -5.23 16 15 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 16 C -0.26 -11.18 9.16 22.36 0.20 -10.98 16 17 C 0.15 7.77 6.66 22.91 0.15 7.92 16 18 O -0.19 -12.20 7.84 0.74 0.01 -12.19 16 19 C -0.43 -26.24 9.49 67.93 0.64 -25.59 16 20 H 0.11 5.79 5.21 -2.91 -0.02 5.78 16 21 C -0.02 -1.40 5.49 84.85 0.47 -0.94 16 22 N -0.91 -59.68 13.67 21.62 0.30 -59.38 16 23 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 24 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 26 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 27 H 0.11 0.15 8.00 -2.39 -0.02 0.13 16 28 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.41 9.63 6.50 -92.71 -0.60 9.03 16 41 H 0.16 3.31 6.40 -2.91 -0.02 3.29 16 42 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 44 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 45 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -93.74 381.48 5.14 -88.60 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.40 Total: 27.79 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 4.75 Total: -19.78 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.27 Total: -85.22 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: 0.24 Total: -57.92 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -93.74 5.14 -88.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909087524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.034 kcal (2) G-P(sol) polarization free energy of solvation -93.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds