Wall clock time and date at job start Tue Mar 31 2020 12:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46976 * 2 1 4 4 C 1.46502 * 119.99845 * 275.53750 * 3 2 1 5 5 C 1.53000 * 109.47204 * 270.00201 * 4 3 2 6 6 C 1.34772 * 120.00302 * 95.54113 * 3 2 1 7 7 O 1.21277 * 119.99934 * 175.42092 * 6 3 2 8 8 C 1.50701 * 119.99692 * 355.41432 * 6 3 2 9 9 H 1.09000 * 109.47346 * 319.23862 * 8 6 3 10 10 C 1.53002 * 109.47231 * 79.24074 * 8 6 3 11 11 O 1.45194 * 109.47060 * 199.23912 * 8 6 3 12 12 C 1.34709 * 117.00294 * 150.00440 * 11 8 6 13 13 O 1.21463 * 119.99816 * 359.97438 * 12 11 8 14 14 C 1.47769 * 120.00494 * 180.02562 * 12 11 8 15 15 C 1.39972 * 120.02603 * 0.24086 * 14 12 11 16 16 C 1.38317 * 120.34773 * 180.28120 * 15 14 12 17 17 C 1.37759 * 120.42288 * 359.45116 * 16 15 14 18 18 C 1.40752 * 120.04900 * 0.29821 * 17 16 15 19 19 C 1.41435 * 120.17832 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00015 * 28.88100 * 19 18 17 21 21 C 1.39936 * 120.00071 * 208.88391 * 19 18 17 22 22 N 1.30828 * 120.00062 * 11.44474 * 21 19 18 23 23 Si 1.86804 * 119.99925 * 191.43920 * 21 19 18 24 24 H 1.48496 * 109.47094 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46813 * 120.00537 * 23 21 19 26 26 H 1.48500 * 109.47229 * 240.00246 * 23 21 19 27 27 C 1.39044 * 120.03294 * 180.02562 * 14 12 11 28 28 H 1.08995 * 109.47321 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.47115 * 60.00715 * 1 2 3 30 30 H 1.09007 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47191 * 239.99545 * 2 1 3 32 32 H 1.08997 * 109.46700 * 119.99901 * 2 1 3 33 33 H 1.08999 * 109.46990 * 30.00228 * 4 3 2 34 34 H 1.09000 * 109.46975 * 149.99844 * 4 3 2 35 35 H 1.08997 * 109.46738 * 60.00101 * 5 4 3 36 36 H 1.08996 * 109.46959 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47170 * 299.99918 * 5 4 3 38 38 H 1.09006 * 109.46580 * 306.12786 * 10 8 6 39 39 H 1.09002 * 109.46770 * 66.11753 * 10 8 6 40 40 H 1.08994 * 109.47390 * 186.12293 * 10 8 6 41 41 H 1.07994 * 119.82579 * 0.02562 * 15 14 12 42 42 H 1.08005 * 119.78776 * 179.72387 * 16 15 14 43 43 H 1.07993 * 119.97667 * 180.27389 * 17 16 15 44 44 H 0.97000 * 120.00177 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.20693 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1470 2.1126 -1.2628 5 6 3.5455 1.8887 -1.8417 6 6 2.3492 1.9791 1.1617 7 8 2.8313 3.0919 1.1552 8 6 2.1200 1.2647 2.4687 9 1 1.1611 0.7474 2.4367 10 6 3.2405 0.2484 2.6978 11 8 2.1131 2.2302 3.5531 12 6 1.3519 1.9396 4.6259 13 8 0.7111 0.9081 4.6543 14 6 1.2955 2.8761 5.7675 15 6 2.0289 4.0678 5.7327 16 6 1.9856 4.9464 6.8001 17 6 1.2119 4.6648 7.9045 18 6 0.4634 3.4739 7.9555 19 6 -0.3315 3.1817 9.0883 20 1 -0.7490 3.9853 9.6768 21 6 -0.5770 1.8515 9.4466 22 7 0.1004 0.8859 8.8806 23 14 -1.8717 1.4544 10.7333 24 1 -2.4919 2.7141 11.2166 25 1 -2.9169 0.5872 10.1325 26 1 -1.2359 0.7460 11.8732 27 6 0.5104 2.5765 6.8753 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3994 1.7521 -1.9693 34 1 1.9941 3.1769 -1.0835 35 1 3.6983 0.8245 -2.0210 36 1 3.6411 2.4325 -2.7815 37 1 4.2932 2.2492 -1.1352 38 1 3.3164 -0.4099 1.8323 39 1 4.1848 0.7743 2.8382 40 1 3.0184 -0.3432 3.5859 41 1 2.6350 4.3004 4.8697 42 1 2.5587 5.8613 6.7656 43 1 1.1799 5.3580 8.7320 44 1 -0.0695 -0.0362 9.1292 45 1 -0.0596 1.6597 6.9054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919318468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:18 Heat of formation + Delta-G solvation = -106.359047 kcal Electronic energy + Delta-G solvation = -26887.700562 eV Core-core repulsion = 23063.024195 eV Total energy + Delta-G solvation = -3824.676368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62227 -39.45645 -37.40693 -36.41254 -35.78458 -33.73053 -32.94594 -31.44569 -30.19203 -29.56729 -29.47611 -25.50791 -25.13657 -23.98525 -23.56697 -22.07734 -20.97754 -19.85226 -19.24177 -18.06290 -17.14058 -17.01951 -16.13863 -15.88259 -15.59947 -15.30307 -14.82915 -14.59452 -14.28125 -14.12081 -13.93174 -13.47353 -13.37047 -13.14657 -12.93224 -12.87348 -12.59201 -12.48658 -12.31851 -12.18314 -11.96135 -11.75014 -11.58228 -11.25991 -11.20179 -11.18154 -11.12206 -10.74192 -10.55482 -10.46453 -10.22020 -9.73872 -9.68140 -9.48347 -9.28782 -8.95201 -7.75382 -7.50578 -6.77201 -4.44937 1.93335 2.36025 2.54174 2.77818 3.07427 3.11559 3.12518 3.35020 3.55844 3.91987 4.23601 4.56879 4.60856 4.80828 4.81583 4.86363 4.93212 5.02463 5.11934 5.15802 5.27864 5.34559 5.47027 5.52599 5.54735 5.62297 5.70470 5.73146 5.90503 5.96182 6.03293 6.13723 6.31147 6.43488 6.59930 6.86270 6.93967 6.96211 7.11048 7.18762 7.31125 7.68292 7.74543 7.91212 8.02366 8.10314 8.44877 8.48546 8.77378 8.80518 10.18099 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.003026 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.153982 B = 9251.879429 C =10135.502458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 N -0.614 5.614 4 C 0.113 3.887 5 C -0.168 4.168 6 C 0.521 3.479 7 O -0.511 6.511 8 C 0.068 3.932 9 H 0.105 0.895 10 C -0.167 4.167 11 O -0.328 6.328 12 C 0.513 3.487 13 O -0.517 6.517 14 C -0.118 4.118 15 C -0.183 4.183 16 C -0.108 4.108 17 C -0.193 4.193 18 C 0.093 3.907 19 C -0.462 4.462 20 H 0.082 0.918 21 C 0.071 3.929 22 N -0.797 5.797 23 Si 0.913 3.087 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.081 4.081 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.282 0.718 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -4.566 -17.213 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.029 4.029 3 N -0.350 5.350 4 C -0.009 4.009 5 C -0.226 4.226 6 C 0.308 3.692 7 O -0.384 6.384 8 C 0.008 3.992 9 H 0.123 0.877 10 C -0.225 4.225 11 O -0.244 6.244 12 C 0.360 3.640 13 O -0.406 6.406 14 C -0.120 4.120 15 C -0.203 4.203 16 C -0.126 4.126 17 C -0.213 4.213 18 C 0.091 3.909 19 C -0.492 4.492 20 H 0.100 0.900 21 C -0.146 4.146 22 N -0.423 5.423 23 Si 0.737 3.263 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.100 4.100 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.867 -4.527 -17.213 18.028 hybrid contribution -0.562 -0.558 0.466 0.919 sum 2.305 -5.084 -16.747 17.653 Atomic orbital electron populations 1.22237 0.95443 1.02774 1.02889 1.21818 0.95011 0.82261 1.03856 1.47953 1.66283 1.14553 1.06212 1.21411 0.97304 0.98041 0.84136 1.22129 0.97553 1.01730 1.01171 1.20299 0.77931 0.86233 0.84742 1.90721 1.41556 1.19240 1.86903 1.22338 1.02305 0.89796 0.84721 0.87700 1.22221 0.98479 0.98160 1.03609 1.86768 1.64237 1.47358 1.26061 1.22019 0.74833 0.85410 0.81707 1.90741 1.43169 1.26651 1.80086 1.18815 1.05388 0.95161 0.92620 1.20684 1.04673 0.95256 0.99687 1.20540 0.99652 0.98136 0.94267 1.21271 1.01176 1.00544 0.98337 1.17560 0.90709 0.90607 0.92008 1.19569 1.27557 0.92464 1.09565 0.90020 1.25932 0.95500 0.96107 0.97085 1.69755 1.33816 1.01307 1.37386 0.86181 0.80605 0.79395 0.80085 1.18423 1.19703 1.19940 1.21693 0.97524 1.01011 0.89783 0.91971 0.92165 0.91056 0.90032 0.89445 0.90465 0.89827 0.92660 0.91606 0.91988 0.90488 0.90614 0.90140 0.87522 0.88386 0.88219 0.90647 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 10.14 37.16 0.38 -1.01 16 2 C 0.09 0.74 5.64 -4.04 -0.02 0.72 16 3 N -0.61 -6.70 2.47 -173.69 -0.43 -7.12 16 4 C 0.11 1.04 6.11 -4.04 -0.02 1.01 16 5 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 6 C 0.52 7.89 6.94 -10.99 -0.08 7.81 16 7 O -0.51 -9.62 16.24 -13.27 -0.22 -9.83 16 8 C 0.07 1.07 2.14 -27.88 -0.06 1.01 16 9 H 0.11 1.60 5.58 -51.93 -0.29 1.31 16 10 C -0.17 -2.16 9.16 37.16 0.34 -1.82 16 11 O -0.33 -6.66 8.73 -46.97 -0.41 -7.07 16 12 C 0.51 11.67 7.87 34.63 0.27 11.94 16 13 O -0.52 -12.22 15.59 -19.24 -0.30 -12.52 16 14 C -0.12 -2.91 5.87 -105.05 -0.62 -3.53 16 15 C -0.18 -4.21 9.62 -38.90 -0.37 -4.58 16 16 C -0.11 -2.39 10.01 -39.73 -0.40 -2.78 16 17 C -0.19 -4.61 9.78 -38.81 -0.38 -4.99 16 18 C 0.09 2.46 5.54 -106.87 -0.59 1.87 16 19 C -0.46 -12.03 9.06 -37.73 -0.34 -12.37 16 20 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 21 C 0.07 1.78 5.24 -17.34 -0.09 1.69 16 22 N -0.80 -20.84 10.88 55.55 0.60 -20.24 16 23 Si 0.91 18.65 29.57 -169.99 -5.03 13.63 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 C -0.08 -2.14 8.20 -38.42 -0.32 -2.46 16 28 H 0.06 0.63 7.40 -51.93 -0.38 0.25 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.46 8.11 -51.93 -0.42 0.03 16 32 H 0.09 0.69 4.50 -51.93 -0.23 0.46 16 33 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.08 0.91 7.49 -51.93 -0.39 0.53 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.72 6.13 -51.93 -0.32 0.41 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.11 2.30 7.59 -52.49 -0.40 1.91 16 42 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 44 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 45 H 0.14 3.86 5.83 -52.49 -0.31 3.55 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -31.19 376.35 -8.54 -39.73 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.51 Total: 6.23 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.92 Total: -8.47 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.17 Total: -27.36 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.93 Total: -29.42 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.19 -8.54 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919318468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.628 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds