Wall clock time and date at job start Tue Mar 31 2020 12:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46976 * 2 1 4 4 C 1.46502 * 119.99845 * 275.53750 * 3 2 1 5 5 C 1.53000 * 109.47204 * 270.00201 * 4 3 2 6 6 C 1.34772 * 120.00302 * 95.54113 * 3 2 1 7 7 O 1.21277 * 119.99934 * 175.42092 * 6 3 2 8 8 C 1.50701 * 119.99692 * 355.41432 * 6 3 2 9 9 H 1.09000 * 109.47346 * 319.23862 * 8 6 3 10 10 C 1.53002 * 109.47231 * 79.24074 * 8 6 3 11 11 O 1.45194 * 109.47060 * 199.23912 * 8 6 3 12 12 C 1.34709 * 117.00294 * 150.00440 * 11 8 6 13 13 O 1.21463 * 119.99816 * 359.97438 * 12 11 8 14 14 C 1.47769 * 120.00494 * 180.02562 * 12 11 8 15 15 C 1.39972 * 120.02603 * 0.24086 * 14 12 11 16 16 C 1.38317 * 120.34773 * 180.28120 * 15 14 12 17 17 C 1.37759 * 120.42288 * 359.45116 * 16 15 14 18 18 C 1.40752 * 120.04900 * 0.29821 * 17 16 15 19 19 C 1.41435 * 120.17832 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00015 * 28.88100 * 19 18 17 21 21 C 1.39936 * 120.00071 * 208.88391 * 19 18 17 22 22 N 1.30828 * 120.00062 * 11.44474 * 21 19 18 23 23 Si 1.86804 * 119.99925 * 191.43920 * 21 19 18 24 24 H 1.48496 * 109.47094 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46813 * 120.00537 * 23 21 19 26 26 H 1.48500 * 109.47229 * 240.00246 * 23 21 19 27 27 C 1.39044 * 120.03294 * 180.02562 * 14 12 11 28 28 H 1.08995 * 109.47321 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.47115 * 60.00715 * 1 2 3 30 30 H 1.09007 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47191 * 239.99545 * 2 1 3 32 32 H 1.08997 * 109.46700 * 119.99901 * 2 1 3 33 33 H 1.08999 * 109.46990 * 30.00228 * 4 3 2 34 34 H 1.09000 * 109.46975 * 149.99844 * 4 3 2 35 35 H 1.08997 * 109.46738 * 60.00101 * 5 4 3 36 36 H 1.08996 * 109.46959 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47170 * 299.99918 * 5 4 3 38 38 H 1.09006 * 109.46580 * 306.12786 * 10 8 6 39 39 H 1.09002 * 109.46770 * 66.11753 * 10 8 6 40 40 H 1.08994 * 109.47390 * 186.12293 * 10 8 6 41 41 H 1.07994 * 119.82579 * 0.02562 * 15 14 12 42 42 H 1.08005 * 119.78776 * 179.72387 * 16 15 14 43 43 H 1.07993 * 119.97667 * 180.27389 * 17 16 15 44 44 H 0.97000 * 120.00177 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.20693 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1470 2.1126 -1.2628 5 6 3.5455 1.8887 -1.8417 6 6 2.3492 1.9791 1.1617 7 8 2.8313 3.0919 1.1552 8 6 2.1200 1.2647 2.4687 9 1 1.1611 0.7474 2.4367 10 6 3.2405 0.2484 2.6978 11 8 2.1131 2.2302 3.5531 12 6 1.3519 1.9396 4.6259 13 8 0.7111 0.9081 4.6543 14 6 1.2955 2.8761 5.7675 15 6 2.0289 4.0678 5.7327 16 6 1.9856 4.9464 6.8001 17 6 1.2119 4.6648 7.9045 18 6 0.4634 3.4739 7.9555 19 6 -0.3315 3.1817 9.0883 20 1 -0.7490 3.9853 9.6768 21 6 -0.5770 1.8515 9.4466 22 7 0.1004 0.8859 8.8806 23 14 -1.8717 1.4544 10.7333 24 1 -2.4919 2.7141 11.2166 25 1 -2.9169 0.5872 10.1325 26 1 -1.2359 0.7460 11.8732 27 6 0.5104 2.5765 6.8753 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3994 1.7521 -1.9693 34 1 1.9941 3.1769 -1.0835 35 1 3.6983 0.8245 -2.0210 36 1 3.6411 2.4325 -2.7815 37 1 4.2932 2.2492 -1.1352 38 1 3.3164 -0.4099 1.8323 39 1 4.1848 0.7743 2.8382 40 1 3.0184 -0.3432 3.5859 41 1 2.6350 4.3004 4.8697 42 1 2.5587 5.8613 6.7656 43 1 1.1799 5.3580 8.7320 44 1 -0.0695 -0.0362 9.1292 45 1 -0.0596 1.6597 6.9054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919318468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:17 Heat of formation + Delta-G solvation = -121.951730 kcal Electronic energy + Delta-G solvation = -26888.376712 eV Core-core repulsion = 23063.024195 eV Total energy + Delta-G solvation = -3825.352517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.00383 -40.89456 -39.22450 -37.63978 -37.26409 -35.60942 -33.95658 -32.53166 -31.89883 -31.38337 -30.39638 -27.34429 -26.42286 -25.14560 -24.58174 -23.29836 -22.85183 -21.54723 -20.31900 -19.78228 -18.51705 -18.35015 -17.61409 -17.31373 -17.13141 -16.66489 -16.51475 -16.21603 -15.36274 -15.23979 -15.06032 -14.86119 -14.83166 -14.41412 -14.29802 -14.16496 -13.70340 -13.57805 -13.52893 -13.51044 -12.98938 -12.92344 -12.90355 -12.82435 -12.60642 -12.58327 -12.24328 -12.07044 -12.04712 -11.95697 -11.88970 -11.56061 -11.38722 -11.13955 -10.85331 -9.86733 -9.65196 -9.43261 -8.64038 -6.42576 0.06198 0.93722 1.09776 1.39241 1.40061 1.44202 1.55021 1.73040 2.09975 2.20882 2.73153 3.17102 3.58257 3.63282 3.74184 3.83021 3.92015 4.11397 4.15912 4.33901 4.38125 4.40847 4.46931 4.50634 4.58046 4.59639 4.68919 4.77543 4.84683 4.92775 4.97919 5.01437 5.02771 5.08030 5.15277 5.26126 5.28133 5.31559 5.41690 5.51739 5.77868 5.85279 5.99518 6.12516 6.19465 6.51187 6.70567 6.85928 6.86607 6.92504 8.33451 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.003026 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.153982 B = 9251.879429 C =10135.502458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.086 3.914 3 N -0.601 5.601 4 C 0.107 3.893 5 C -0.161 4.161 6 C 0.520 3.480 7 O -0.558 6.558 8 C 0.058 3.942 9 H 0.109 0.891 10 C -0.161 4.161 11 O -0.336 6.336 12 C 0.517 3.483 13 O -0.534 6.534 14 C -0.132 4.132 15 C -0.180 4.180 16 C -0.101 4.101 17 C -0.196 4.196 18 C 0.065 3.935 19 C -0.493 4.493 20 H 0.087 0.913 21 C 0.028 3.972 22 N -0.833 5.833 23 Si 0.987 3.013 24 H -0.253 1.253 25 H -0.269 1.269 26 H -0.266 1.266 27 C -0.109 4.109 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.033 0.967 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.119 0.881 44 H 0.287 0.713 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -5.118 -18.726 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.035 4.035 3 N -0.335 5.335 4 C -0.014 4.014 5 C -0.219 4.219 6 C 0.307 3.693 7 O -0.436 6.436 8 C -0.001 4.001 9 H 0.126 0.874 10 C -0.218 4.218 11 O -0.252 6.252 12 C 0.365 3.635 13 O -0.425 6.425 14 C -0.133 4.133 15 C -0.199 4.199 16 C -0.119 4.119 17 C -0.216 4.216 18 C 0.063 3.937 19 C -0.522 4.522 20 H 0.105 0.895 21 C -0.186 4.186 22 N -0.460 5.460 23 Si 0.808 3.192 24 H -0.176 1.176 25 H -0.194 1.194 26 H -0.190 1.190 27 C -0.129 4.129 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.135 0.865 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.098 0.902 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.011 -5.096 -18.777 19.688 hybrid contribution -0.540 -0.376 0.741 0.991 sum 2.471 -5.472 -18.036 19.009 Atomic orbital electron populations 1.22226 0.95332 1.03734 1.01866 1.22129 0.95071 0.80553 1.05737 1.48064 1.64324 1.15634 1.05466 1.21643 0.99224 0.96839 0.83697 1.22075 0.95682 1.03089 1.01054 1.20215 0.77904 0.85690 0.85516 1.90697 1.44230 1.21117 1.87556 1.22778 1.03691 0.89712 0.83881 0.87353 1.22235 0.96913 0.97709 1.04992 1.86705 1.63208 1.48918 1.26382 1.21726 0.74873 0.84801 0.82099 1.90712 1.43956 1.27211 1.80632 1.19064 1.05161 0.96216 0.92881 1.20949 1.03919 0.94604 1.00428 1.20945 0.98868 0.99135 0.92979 1.21565 1.00644 0.99871 0.99502 1.17931 0.91712 0.91760 0.92281 1.19863 1.28793 0.93438 1.10129 0.89484 1.26849 0.97145 0.95530 0.99099 1.69849 1.35312 1.01828 1.38970 0.85072 0.77558 0.79316 0.77257 1.17582 1.19410 1.19032 1.21496 0.99262 1.00921 0.91243 0.95001 0.91158 0.89154 0.86240 0.89438 0.86999 0.92159 0.90777 0.89829 0.94786 0.86469 0.91091 0.91180 0.86050 0.84319 0.86335 0.90213 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.14 71.98 0.73 -1.65 16 2 C 0.09 1.12 5.64 86.38 0.49 1.60 16 3 N -0.60 -12.10 2.47 -821.81 -2.03 -14.14 16 4 C 0.11 1.75 6.11 86.38 0.53 2.28 16 5 C -0.16 -2.23 10.24 71.98 0.74 -1.49 16 6 C 0.52 15.66 6.94 87.66 0.61 16.27 16 7 O -0.56 -21.48 16.24 14.99 0.24 -21.23 16 8 C 0.06 1.83 2.14 29.85 0.06 1.89 16 9 H 0.11 3.35 5.58 -2.39 -0.01 3.34 16 10 C -0.16 -4.06 9.16 71.98 0.66 -3.40 16 11 O -0.34 -13.97 8.73 -50.01 -0.44 -14.41 16 12 C 0.52 24.38 7.87 70.34 0.55 24.93 16 13 O -0.53 -26.31 15.59 19.96 0.31 -26.00 16 14 C -0.13 -6.68 5.87 -20.14 -0.12 -6.80 16 15 C -0.18 -8.21 9.62 22.71 0.22 -7.99 16 16 C -0.10 -4.35 10.01 22.17 0.22 -4.13 16 17 C -0.20 -9.30 9.78 22.77 0.22 -9.07 16 18 C 0.07 3.54 5.54 -21.32 -0.12 3.42 16 19 C -0.49 -26.31 9.06 23.47 0.21 -26.09 16 20 H 0.09 4.37 7.87 -2.91 -0.02 4.35 16 21 C 0.03 1.41 5.24 85.25 0.45 1.85 16 22 N -0.83 -45.21 10.88 21.82 0.24 -44.97 16 23 Si 0.99 38.67 29.57 68.60 2.03 40.69 16 24 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 25 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 26 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 27 C -0.11 -6.08 8.20 23.02 0.19 -5.89 16 28 H 0.03 0.63 7.40 -2.39 -0.02 0.61 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 31 H 0.12 0.75 8.11 -2.39 -0.02 0.73 16 32 H 0.09 1.15 4.50 -2.39 -0.01 1.14 16 33 H 0.11 1.08 8.07 -2.39 -0.02 1.06 16 34 H 0.06 1.29 7.49 -2.39 -0.02 1.28 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.12 1.94 6.13 -2.38 -0.01 1.92 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.12 5.16 7.59 -2.91 -0.02 5.14 16 42 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 43 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 44 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 45 H 0.11 6.66 5.83 -2.91 -0.02 6.64 16 Total: -1.00 -71.75 376.35 6.99 -64.77 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.99 Total: 29.56 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 5.64 Total: -14.27 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -1.80 Total: -59.10 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: 0.12 Total: -61.65 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.69 kcal Total: -71.75 6.99 -64.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919318468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.185 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds