Wall clock time and date at job start Tue Mar 31 2020 12:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46499 * 109.47430 * 2 1 4 4 C 1.46502 * 119.99929 * 72.65770 * 3 2 1 5 5 C 1.53008 * 109.46880 * 90.00606 * 4 3 2 6 6 H 1.08994 * 110.56671 * 52.31909 * 5 4 3 7 7 C 1.54513 * 110.50862 * 174.99813 * 5 4 3 8 8 C 1.54487 * 104.05896 * 118.64437 * 7 5 4 9 9 O 1.44429 * 104.80450 * 23.97876 * 8 7 5 10 10 C 1.44426 * 105.27418 * 319.48750 * 9 8 7 11 11 C 1.34777 * 119.99997 * 252.66576 * 3 2 1 12 12 O 1.21589 * 119.99893 * 181.64641 * 11 3 2 13 13 C 1.47529 * 119.99768 * 1.64021 * 11 3 2 14 14 C 1.39666 * 120.19671 * 26.50079 * 13 11 3 15 15 C 1.37837 * 119.91513 * 179.71994 * 14 13 11 16 16 C 1.38569 * 120.32387 * 0.57800 * 15 14 13 17 17 C 1.38028 * 120.40431 * 359.69341 * 16 15 14 18 18 C 1.38835 * 120.06767 * 0.02562 * 17 16 15 19 19 O 1.35523 * 120.16162 * 179.97438 * 18 17 16 20 20 C 1.34821 * 116.99626 * 354.23323 * 19 18 17 21 21 H 1.07997 * 119.99913 * 5.06782 * 20 19 18 22 22 C 1.38701 * 119.99923 * 185.07691 * 20 19 18 23 23 N 1.31520 * 119.99684 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99889 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47145 * 89.99976 * 24 22 20 26 26 H 1.48495 * 109.47155 * 209.99619 * 24 22 20 27 27 H 1.48498 * 109.47376 * 330.00037 * 24 22 20 28 28 H 1.09001 * 109.47257 * 60.00308 * 1 2 3 29 29 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47793 * 300.00430 * 1 2 3 31 31 H 1.08995 * 109.47793 * 239.99570 * 2 1 3 32 32 H 1.09009 * 109.46994 * 119.99891 * 2 1 3 33 33 H 1.09005 * 109.47397 * 330.00708 * 4 3 2 34 34 H 1.09001 * 109.46953 * 210.00221 * 4 3 2 35 35 H 1.08994 * 110.51204 * 237.28446 * 7 5 4 36 36 H 1.08989 * 110.51216 * 0.02562 * 7 5 4 37 37 H 1.09001 * 110.37035 * 142.81015 * 8 7 5 38 38 H 1.08993 * 110.36968 * 265.14500 * 8 7 5 39 39 H 1.09001 * 110.37395 * 281.68340 * 10 9 8 40 40 H 1.08995 * 110.37344 * 159.34709 * 10 9 8 41 41 H 1.07997 * 120.04190 * 359.97438 * 14 13 11 42 42 H 1.07999 * 119.83488 * 180.27156 * 15 14 13 43 43 H 1.08002 * 119.79459 * 179.72058 * 16 15 14 44 44 H 1.07997 * 119.96613 * 180.02562 * 17 16 15 45 45 H 0.96999 * 119.99399 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9060 2.1979 1.2111 5 6 3.1652 2.0232 2.0626 6 1 4.0591 2.2048 1.4660 7 6 3.1281 2.9687 3.2841 8 6 3.1518 2.0141 4.4985 9 8 3.7611 0.8019 4.0032 10 6 3.2069 0.6092 2.6835 11 6 2.5709 1.9006 -1.1142 12 8 3.0034 3.0369 -1.1054 13 6 2.6510 1.0903 -2.3444 14 6 1.7293 0.0659 -2.5721 15 6 1.8060 -0.6838 -3.7262 16 6 2.8011 -0.4344 -4.6577 17 6 3.7223 0.5710 -4.4436 18 6 3.6569 1.3401 -3.2895 19 8 4.5607 2.3274 -3.0771 20 6 5.5695 2.4350 -3.9650 21 1 5.5858 1.8059 -4.8427 22 6 6.5865 3.3535 -3.7511 23 7 6.5665 4.1198 -2.6824 24 14 7.9847 3.5021 -4.9809 25 1 7.6304 4.5086 -6.0138 26 1 9.2201 3.9296 -4.2766 27 1 8.2149 2.1866 -5.6301 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.0337 1.8814 1.7831 34 1 1.7977 3.2463 0.9335 35 1 4.0037 3.6177 3.2913 36 1 2.2127 3.5602 3.2815 37 1 3.7518 2.4389 5.3033 38 1 2.1376 1.8151 4.8445 39 1 2.2010 0.1948 2.7511 40 1 3.8490 -0.0452 2.0941 41 1 0.9550 -0.1359 -1.8468 42 1 1.0900 -1.4728 -3.9030 43 1 2.8560 -1.0300 -5.5570 44 1 4.4947 0.7596 -5.1744 45 1 7.2779 4.7619 -2.5327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919927727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:23 Heat of formation + Delta-G solvation = -49.252539 kcal Electronic energy + Delta-G solvation = -27841.220765 eV Core-core repulsion = 24019.020722 eV Total energy + Delta-G solvation = -3822.200044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26942 -39.28853 -38.16121 -36.51636 -35.58598 -33.16869 -32.35540 -30.71983 -30.21331 -29.13690 -28.82437 -25.96116 -25.31066 -23.58793 -22.74738 -22.12903 -21.58210 -20.44083 -19.05773 -18.15574 -17.13898 -16.59529 -16.42676 -15.81162 -15.52848 -15.22333 -14.91296 -14.56305 -14.34961 -14.24508 -14.13344 -13.65335 -13.44532 -13.20146 -12.76223 -12.68445 -12.50801 -12.27893 -12.19916 -11.83599 -11.66272 -11.63619 -11.48969 -11.22585 -11.12040 -11.02333 -10.82801 -10.80471 -10.52878 -10.48458 -10.30387 -9.78656 -9.57435 -8.89095 -8.88181 -8.27879 -8.18809 -7.32501 -6.46590 -4.06462 1.72193 2.28245 3.11064 3.11875 3.16753 3.37402 3.65389 3.92420 3.98733 4.53893 4.67151 4.78866 4.89009 4.96856 5.02315 5.06817 5.13656 5.20132 5.25347 5.26780 5.39777 5.49900 5.54658 5.58959 5.65513 5.71158 5.73891 5.78358 5.84379 5.85831 5.93021 6.00279 6.10993 6.14502 6.20899 6.36255 6.55261 6.65774 6.78435 6.90117 6.98170 7.04560 7.23653 7.27883 7.68006 7.87003 7.97375 8.93685 9.00713 9.65151 10.67863 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.004720 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.974429 B = 5930.183107 C = 7868.602174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 N -0.619 5.619 4 C 0.132 3.868 5 C -0.139 4.139 6 H 0.094 0.906 7 C -0.147 4.147 8 C 0.045 3.955 9 O -0.379 6.379 10 C 0.053 3.947 11 C 0.563 3.437 12 O -0.505 6.505 13 C -0.225 4.225 14 C -0.069 4.069 15 C -0.231 4.231 16 C -0.052 4.052 17 C -0.238 4.238 18 C 0.190 3.810 19 O -0.133 6.133 20 C -0.402 4.402 21 H 0.094 0.906 22 C 0.044 3.956 23 N -0.837 5.837 24 Si 0.941 3.059 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.460 -8.174 7.902 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.054 4.054 3 N -0.355 5.355 4 C 0.009 3.991 5 C -0.159 4.159 6 H 0.112 0.888 7 C -0.186 4.186 8 C -0.032 4.032 9 O -0.298 6.298 10 C -0.024 4.024 11 C 0.353 3.647 12 O -0.379 6.379 13 C -0.230 4.230 14 C -0.087 4.087 15 C -0.250 4.250 16 C -0.070 4.070 17 C -0.257 4.257 18 C 0.131 3.869 19 O -0.031 6.031 20 C -0.478 4.478 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.469 5.469 24 Si 0.765 3.235 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.191 1.191 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.161 0.839 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.852 -7.259 8.304 14.789 hybrid contribution 0.517 0.095 -0.816 0.971 sum -9.335 -7.164 7.488 13.947 Atomic orbital electron populations 1.22261 0.96365 1.02213 1.02587 1.22473 0.94056 0.84025 1.04888 1.47794 1.62980 1.13217 1.11507 1.21319 0.95476 0.97116 0.85165 1.22995 1.01291 0.94733 0.96876 0.88779 1.22925 1.03345 0.98499 0.93810 1.23402 0.97874 0.85057 0.96831 1.89115 1.66560 1.43130 1.30982 1.23576 0.98460 0.97017 0.83333 1.18282 0.77065 0.86700 0.82606 1.90878 1.44849 1.18219 1.83920 1.18783 1.02970 1.04079 0.97132 1.21703 0.97408 0.92822 0.96768 1.20522 1.02760 1.04823 0.96907 1.20915 0.93312 0.95300 0.97520 1.21150 1.03896 1.00795 0.99837 1.19261 0.89313 0.86926 0.91407 1.84116 1.31098 1.40492 1.47428 1.21468 1.00184 1.22792 1.03362 0.88868 1.25374 0.98124 0.95303 0.97497 1.70109 1.32269 1.19555 1.24926 0.85719 0.79360 0.79135 0.79261 1.19725 1.20139 1.19059 0.91674 0.91457 0.92314 0.86426 0.91656 0.91103 0.89653 0.90318 0.90377 0.89358 0.92560 0.92396 0.89170 0.83874 0.87238 0.87235 0.85113 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.11 37.15 0.34 -1.36 16 2 C 0.07 0.84 5.47 -4.05 -0.02 0.82 16 3 N -0.62 -10.00 2.47 -174.91 -0.43 -10.43 16 4 C 0.13 1.88 4.53 -4.04 -0.02 1.86 16 5 C -0.14 -2.00 3.35 -89.04 -0.30 -2.30 16 6 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 7 C -0.15 -1.76 6.74 -25.16 -0.17 -1.93 16 8 C 0.05 0.50 7.63 37.94 0.29 0.79 16 9 O -0.38 -5.36 11.65 -35.23 -0.41 -5.77 16 10 C 0.05 0.69 5.81 37.93 0.22 0.91 16 11 C 0.56 12.26 7.41 -12.47 -0.09 12.16 16 12 O -0.50 -13.52 15.23 -14.52 -0.22 -13.75 16 13 C -0.22 -4.85 5.58 -104.81 -0.58 -5.43 16 14 C -0.07 -1.17 7.46 -39.20 -0.29 -1.46 16 15 C -0.23 -3.70 10.03 -39.61 -0.40 -4.10 16 16 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 17 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 18 C 0.19 4.69 6.63 -38.60 -0.26 4.44 16 19 O -0.13 -3.90 8.18 -19.04 -0.16 -4.05 16 20 C -0.40 -11.36 9.49 30.90 0.29 -11.07 16 21 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 22 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 23 N -0.84 -25.17 13.67 55.48 0.76 -24.41 16 24 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 28 H 0.06 0.69 7.10 -51.93 -0.37 0.33 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.52 7.28 -51.93 -0.38 0.15 16 31 H 0.12 1.57 3.86 -53.32 -0.21 1.37 16 32 H 0.07 0.70 5.91 -51.92 -0.31 0.39 16 33 H 0.07 0.78 6.99 -51.93 -0.36 0.41 16 34 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.80 7.73 -51.94 -0.40 0.39 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.64 6.84 -51.93 -0.36 0.28 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.14 1.93 2.82 -52.49 -0.15 1.79 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -34.64 356.08 -7.96 -42.60 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.00 Total: 7.20 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.84 Total: -12.28 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.33 Total: -34.85 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.79 Total: -23.57 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.64 -7.96 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919927727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.651 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds