Wall clock time and date at job start Tue Mar 31 2020 12:30:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46499 * 109.47384 * 2 1
4 4 C 1.46497 * 119.99870 * 264.23928 * 3 2 1
5 5 C 1.53003 * 109.47095 * 262.92862 * 4 3 2
6 6 H 1.09002 * 110.43540 * 297.97288 * 5 4 3
7 7 C 1.54808 * 110.49016 * 175.28521 * 5 4 3
8 8 C 1.54998 * 102.09063 * 220.44235 * 7 5 4
9 9 O 1.44383 * 103.49309 * 37.02290 * 8 7 5
10 10 C 1.43749 * 106.97289 * 319.94226 * 9 8 7
11 11 C 1.34781 * 120.00017 * 84.23425 * 3 2 1
12 12 O 1.21591 * 119.99399 * 185.98426 * 11 3 2
13 13 C 1.47527 * 120.00056 * 5.98375 * 11 3 2
14 14 C 1.39671 * 120.19568 * 56.16521 * 13 11 3
15 15 C 1.37826 * 119.91937 * 179.69866 * 14 13 11
16 16 C 1.38569 * 120.32257 * 0.29975 * 15 14 13
17 17 C 1.38028 * 120.40403 * 359.97438 * 16 15 14
18 18 C 1.38832 * 120.06750 * 359.97298 * 17 16 15
19 19 O 1.35525 * 120.15666 * 180.02562 * 18 17 16
20 20 C 1.34818 * 116.99983 * 354.55825 * 19 18 17
21 21 H 1.07996 * 120.00026 * 5.09311 * 20 19 18
22 22 C 1.38697 * 119.99629 * 185.08916 * 20 19 18
23 23 N 1.31517 * 120.00463 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 119.99778 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47315 * 90.00286 * 24 22 20
26 26 H 1.48503 * 109.47303 * 210.00064 * 24 22 20
27 27 H 1.48497 * 109.47315 * 330.00319 * 24 22 20
28 28 H 1.08995 * 109.47349 * 179.97438 * 1 2 3
29 29 H 1.08991 * 109.47585 * 300.00558 * 1 2 3
30 30 H 1.09000 * 109.46630 * 60.00693 * 1 2 3
31 31 H 1.09000 * 109.47496 * 239.99277 * 2 1 3
32 32 H 1.08999 * 109.46744 * 119.99845 * 2 1 3
33 33 H 1.09005 * 109.47310 * 22.92535 * 4 3 2
34 34 H 1.09000 * 109.47279 * 142.93169 * 4 3 2
35 35 H 1.09001 * 110.90608 * 338.63731 * 7 5 4
36 36 H 1.09003 * 110.90902 * 102.24358 * 7 5 4
37 37 H 1.08997 * 110.62087 * 278.51813 * 8 7 5
38 38 H 1.09007 * 110.75170 * 155.58945 * 8 7 5
39 39 H 1.09000 * 109.87240 * 267.08653 * 10 9 8
40 40 H 1.08992 * 109.87593 * 145.93978 * 10 9 8
41 41 H 1.07998 * 120.04235 * 359.97438 * 14 13 11
42 42 H 1.08003 * 119.83955 * 180.28196 * 15 14 13
43 43 H 1.08010 * 119.80223 * 180.02562 * 16 15 14
44 44 H 1.07998 * 119.96616 * 179.97438 * 17 16 15
45 45 H 0.97000 * 120.00120 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3826 2.0293 -1.2623
5 6 3.8952 1.9280 -1.4697
6 1 4.4244 2.4496 -0.6722
7 6 4.2921 2.5007 -2.8521
8 6 5.3674 1.4899 -3.3257
9 8 4.8726 0.2216 -2.8448
10 6 4.3333 0.4520 -1.5323
11 6 2.1325 2.0556 1.1613
12 8 2.4330 3.2338 1.1530
13 6 1.8929 1.3644 2.4424
14 6 2.6206 0.2178 2.7688
15 6 2.3965 -0.4199 3.9700
16 6 1.4474 0.0672 4.8543
17 6 0.7166 1.1960 4.5428
18 6 0.9297 1.8520 3.3379
19 8 0.2135 2.9608 3.0304
20 6 -0.7687 3.3114 3.8847
21 1 -0.9016 2.7666 4.8076
22 6 -1.6083 4.3720 3.5783
23 7 -1.4467 5.0352 2.4542
24 14 -2.9688 4.8583 4.7624
25 1 -2.4528 5.8677 5.7216
26 1 -4.1054 5.4353 4.0004
27 1 -3.4298 3.6588 5.5064
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5139 0.8898
30 1 -0.3632 0.5137 -0.8901
31 1 1.8934 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.8690 1.5342 -2.0865
34 1 2.0899 3.0787 -1.2297
35 1 3.4387 2.5069 -3.5302
36 1 4.7151 3.5003 -2.7522
37 1 6.3341 1.7196 -2.8775
38 1 5.4413 1.4857 -4.4132
39 1 5.0972 0.2598 -0.7789
40 1 3.4739 -0.1973 -1.3657
41 1 3.3612 -0.1660 2.0829
42 1 2.9632 -1.3038 4.2231
43 1 1.2789 -0.4389 5.7934
44 1 -0.0217 1.5693 5.2370
45 1 -2.0342 5.7767 2.2398
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000919927728.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:26
Heat of formation + Delta-G solvation = -74.835214 kcal
Electronic energy + Delta-G solvation = -27876.709497 eV
Core-core repulsion = 24053.400105 eV
Total energy + Delta-G solvation = -3823.309392 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.20356 -39.31958 -38.19326 -36.39828 -35.55423 -33.06258 -32.38276 -30.62295
-30.19801 -29.14801 -28.90441 -25.93375 -25.36259 -23.76663 -22.58785 -22.12281
-21.59098 -20.58714 -18.93688 -18.09321 -17.15798 -16.63910 -16.31867 -16.16510
-15.80826 -15.08335 -14.84388 -14.75624 -14.27385 -14.02467 -13.82350 -13.64107
-13.62758 -13.10744 -13.02839 -12.78734 -12.58353 -12.27204 -12.17432 -11.83367
-11.76956 -11.58961 -11.36364 -11.32222 -11.08992 -11.00915 -10.94679 -10.88889
-10.77489 -10.49968 -10.44809 -9.73531 -9.63656 -9.03508 -8.91508 -8.36777
-8.14448 -7.35874 -6.50127 -4.10310 1.80510 2.26498 3.09469 3.09788
3.14798 3.32245 3.49936 3.86816 3.90213 4.45230 4.54411 4.70492
4.79508 5.01434 5.02649 5.08907 5.10755 5.17291 5.23094 5.40868
5.47530 5.50191 5.56527 5.58201 5.69273 5.69525 5.73589 5.83190
5.85467 5.96173 6.00862 6.10515 6.12808 6.14379 6.16279 6.53085
6.56282 6.63906 6.76584 6.90819 6.98469 7.03136 7.22208 7.26452
7.65006 7.83961 7.93242 8.86948 8.92642 9.60614 10.65584
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.015337 B = 0.004045 C = 0.003508
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1825.250888 B = 6921.158602 C = 7980.911528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.101 3.899
3 N -0.618 5.618
4 C 0.129 3.871
5 C -0.139 4.139
6 H 0.088 0.912
7 C -0.147 4.147
8 C 0.047 3.953
9 O -0.382 6.382
10 C 0.048 3.952
11 C 0.582 3.418
12 O -0.520 6.520
13 C -0.212 4.212
14 C -0.045 4.045
15 C -0.221 4.221
16 C -0.056 4.056
17 C -0.234 4.234
18 C 0.187 3.813
19 O -0.151 6.151
20 C -0.399 4.399
21 H 0.094 0.906
22 C 0.044 3.956
23 N -0.846 5.846
24 Si 0.941 3.059
25 H -0.272 1.272
26 H -0.277 1.277
27 H -0.266 1.266
28 H 0.061 0.939
29 H 0.067 0.933
30 H 0.053 0.947
31 H 0.074 0.926
32 H 0.087 0.913
33 H 0.076 0.924
34 H 0.085 0.915
35 H 0.079 0.921
36 H 0.082 0.918
37 H 0.058 0.942
38 H 0.090 0.910
39 H 0.055 0.945
40 H 0.090 0.910
41 H 0.114 0.886
42 H 0.110 0.890
43 H 0.110 0.890
44 H 0.131 0.869
45 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.436 -10.288 -6.952 14.473
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.022 4.022
3 N -0.352 5.352
4 C 0.006 3.994
5 C -0.159 4.159
6 H 0.107 0.893
7 C -0.185 4.185
8 C -0.030 4.030
9 O -0.301 6.301
10 C -0.028 4.028
11 C 0.371 3.629
12 O -0.394 6.394
13 C -0.217 4.217
14 C -0.063 4.063
15 C -0.240 4.240
16 C -0.075 4.075
17 C -0.253 4.253
18 C 0.129 3.871
19 O -0.052 6.052
20 C -0.475 4.475
21 H 0.112 0.888
22 C -0.162 4.162
23 N -0.479 5.479
24 Si 0.765 3.235
25 H -0.197 1.197
26 H -0.202 1.202
27 H -0.191 1.191
28 H 0.080 0.920
29 H 0.086 0.914
30 H 0.072 0.928
31 H 0.092 0.908
32 H 0.105 0.895
33 H 0.095 0.905
34 H 0.103 0.897
35 H 0.098 0.902
36 H 0.100 0.900
37 H 0.076 0.924
38 H 0.109 0.891
39 H 0.074 0.926
40 H 0.108 0.892
41 H 0.132 0.868
42 H 0.128 0.872
43 H 0.128 0.872
44 H 0.149 0.851
45 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 7.473 -9.439 -7.383 14.123
hybrid contribution -0.742 0.418 0.862 1.211
sum 6.731 -9.021 -6.522 13.008
Atomic orbital electron populations
1.22172 0.95790 1.01670 1.03185 1.21772 0.94924 0.82679 1.02785
1.47893 1.66947 1.14325 1.06077 1.21339 0.92434 0.99948 0.85641
1.22985 0.98405 0.96145 0.98324 0.89327 1.23132 0.99545 0.99736
0.96132 1.23532 0.96456 0.83209 0.99779 1.88846 1.79147 1.30213
1.31907 1.23390 0.98384 0.96280 0.84792 1.18171 0.75624 0.85802
0.83267 1.90769 1.46296 1.15243 1.87118 1.18709 1.05765 1.00978
0.96258 1.20628 0.96910 0.92429 0.96373 1.20472 1.03988 1.03184
0.96400 1.20879 0.94076 0.94674 0.97859 1.21139 1.05818 0.99628
0.98699 1.19185 0.90320 0.86179 0.91402 1.84011 1.40661 1.33655
1.46843 1.21402 1.08162 1.16526 1.01419 0.88843 1.25342 0.98196
0.95495 0.97212 1.70067 1.36854 1.18997 1.21958 0.85715 0.79331
0.79241 0.79170 1.19730 1.20157 1.19066 0.92043 0.91437 0.92758
0.90814 0.89536 0.90535 0.89715 0.90199 0.89969 0.92382 0.89133
0.92631 0.89228 0.86794 0.87172 0.87170 0.85092 0.91847
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.48 10.20 37.16 0.38 -2.10 16
2 C 0.10 1.38 5.17 -4.04 -0.02 1.35 16
3 N -0.62 -10.32 2.26 -174.92 -0.40 -10.72 16
4 C 0.13 1.90 4.72 -4.04 -0.02 1.88 16
5 C -0.14 -1.78 3.29 -89.09 -0.29 -2.07 16
6 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16
7 C -0.15 -1.53 6.71 -24.72 -0.17 -1.69 16
8 C 0.05 0.46 7.72 38.21 0.29 0.76 16
9 O -0.38 -4.79 11.52 -35.23 -0.41 -5.19 16
10 C 0.05 0.58 7.13 37.73 0.27 0.85 16
11 C 0.58 12.56 6.65 -12.47 -0.08 12.48 16
12 O -0.52 -13.50 16.52 4.49 0.07 -13.43 16
13 C -0.21 -4.50 4.79 -104.81 -0.50 -5.00 16
14 C -0.04 -0.76 7.62 -39.20 -0.30 -1.06 16
15 C -0.22 -3.54 10.02 -39.61 -0.40 -3.94 16
16 C -0.06 -0.97 10.03 -39.54 -0.40 -1.37 16
17 C -0.23 -4.91 9.16 -39.44 -0.36 -5.27 16
18 C 0.19 4.50 6.65 -38.60 -0.26 4.24 16
19 O -0.15 -4.36 9.03 -0.03 0.00 -4.36 16
20 C -0.40 -11.09 9.49 30.90 0.29 -10.80 16
21 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16
22 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16
23 N -0.85 -25.04 13.67 55.48 0.76 -24.28 16
24 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16
25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16
26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16
27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16
28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
29 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16
30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
31 H 0.07 0.80 5.97 -51.93 -0.31 0.49 16
32 H 0.09 1.16 4.67 -51.93 -0.24 0.92 16
33 H 0.08 0.95 7.99 -51.93 -0.41 0.54 16
34 H 0.08 1.45 7.56 -51.93 -0.39 1.06 16
35 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16
36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16
39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
40 H 0.09 1.03 4.63 -51.93 -0.24 0.79 16
41 H 0.11 1.62 7.47 -52.49 -0.39 1.22 16
42 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16
43 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16
44 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16
45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
LS Contribution 365.13 15.07 5.50 5.50
Total: -1.00 -33.71 365.13 -7.47 -41.18
By element:
Atomic # 1 Polarization: 12.94 SS G_CDS: -6.32 Total: 6.62 kcal
Atomic # 6 Polarization: -8.97 SS G_CDS: -1.65 Total: -10.63 kcal
Atomic # 7 Polarization: -35.36 SS G_CDS: 0.36 Total: -34.99 kcal
Atomic # 8 Polarization: -22.64 SS G_CDS: -0.33 Total: -22.98 kcal
Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -33.71 -7.47 -41.18 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000919927728.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.656 kcal
(2) G-P(sol) polarization free energy of solvation -33.710 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.367 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds