Wall clock time and date at job start Tue Mar 31 2020 12:30:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46499 * 109.47384 * 2 1
4 4 C 1.46497 * 119.99870 * 264.23928 * 3 2 1
5 5 C 1.53003 * 109.47095 * 262.92862 * 4 3 2
6 6 H 1.09002 * 110.43540 * 297.97288 * 5 4 3
7 7 C 1.54808 * 110.49016 * 175.28521 * 5 4 3
8 8 C 1.54998 * 102.09063 * 220.44235 * 7 5 4
9 9 O 1.44383 * 103.49309 * 37.02290 * 8 7 5
10 10 C 1.43749 * 106.97289 * 319.94226 * 9 8 7
11 11 C 1.34781 * 120.00017 * 84.23425 * 3 2 1
12 12 O 1.21591 * 119.99399 * 185.98426 * 11 3 2
13 13 C 1.47527 * 120.00056 * 5.98375 * 11 3 2
14 14 C 1.39671 * 120.19568 * 56.16521 * 13 11 3
15 15 C 1.37826 * 119.91937 * 179.69866 * 14 13 11
16 16 C 1.38569 * 120.32257 * 0.29975 * 15 14 13
17 17 C 1.38028 * 120.40403 * 359.97438 * 16 15 14
18 18 C 1.38832 * 120.06750 * 359.97298 * 17 16 15
19 19 O 1.35525 * 120.15666 * 180.02562 * 18 17 16
20 20 C 1.34818 * 116.99983 * 354.55825 * 19 18 17
21 21 H 1.07996 * 120.00026 * 5.09311 * 20 19 18
22 22 C 1.38697 * 119.99629 * 185.08916 * 20 19 18
23 23 N 1.31517 * 120.00463 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 119.99778 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47315 * 90.00286 * 24 22 20
26 26 H 1.48503 * 109.47303 * 210.00064 * 24 22 20
27 27 H 1.48497 * 109.47315 * 330.00319 * 24 22 20
28 28 H 1.08995 * 109.47349 * 179.97438 * 1 2 3
29 29 H 1.08991 * 109.47585 * 300.00558 * 1 2 3
30 30 H 1.09000 * 109.46630 * 60.00693 * 1 2 3
31 31 H 1.09000 * 109.47496 * 239.99277 * 2 1 3
32 32 H 1.08999 * 109.46744 * 119.99845 * 2 1 3
33 33 H 1.09005 * 109.47310 * 22.92535 * 4 3 2
34 34 H 1.09000 * 109.47279 * 142.93169 * 4 3 2
35 35 H 1.09001 * 110.90608 * 338.63731 * 7 5 4
36 36 H 1.09003 * 110.90902 * 102.24358 * 7 5 4
37 37 H 1.08997 * 110.62087 * 278.51813 * 8 7 5
38 38 H 1.09007 * 110.75170 * 155.58945 * 8 7 5
39 39 H 1.09000 * 109.87240 * 267.08653 * 10 9 8
40 40 H 1.08992 * 109.87593 * 145.93978 * 10 9 8
41 41 H 1.07998 * 120.04235 * 359.97438 * 14 13 11
42 42 H 1.08003 * 119.83955 * 180.28196 * 15 14 13
43 43 H 1.08010 * 119.80223 * 180.02562 * 16 15 14
44 44 H 1.07998 * 119.96616 * 179.97438 * 17 16 15
45 45 H 0.97000 * 120.00120 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3826 2.0293 -1.2623
5 6 3.8952 1.9280 -1.4697
6 1 4.4244 2.4496 -0.6722
7 6 4.2921 2.5007 -2.8521
8 6 5.3674 1.4899 -3.3257
9 8 4.8726 0.2216 -2.8448
10 6 4.3333 0.4520 -1.5323
11 6 2.1325 2.0556 1.1613
12 8 2.4330 3.2338 1.1530
13 6 1.8929 1.3644 2.4424
14 6 2.6206 0.2178 2.7688
15 6 2.3965 -0.4199 3.9700
16 6 1.4474 0.0672 4.8543
17 6 0.7166 1.1960 4.5428
18 6 0.9297 1.8520 3.3379
19 8 0.2135 2.9608 3.0304
20 6 -0.7687 3.3114 3.8847
21 1 -0.9016 2.7666 4.8076
22 6 -1.6083 4.3720 3.5783
23 7 -1.4467 5.0352 2.4542
24 14 -2.9688 4.8583 4.7624
25 1 -2.4528 5.8677 5.7216
26 1 -4.1054 5.4353 4.0004
27 1 -3.4298 3.6588 5.5064
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5139 0.8898
30 1 -0.3632 0.5137 -0.8901
31 1 1.8934 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.8690 1.5342 -2.0865
34 1 2.0899 3.0787 -1.2297
35 1 3.4387 2.5069 -3.5302
36 1 4.7151 3.5003 -2.7522
37 1 6.3341 1.7196 -2.8775
38 1 5.4413 1.4857 -4.4132
39 1 5.0972 0.2598 -0.7789
40 1 3.4739 -0.1973 -1.3657
41 1 3.3612 -0.1660 2.0829
42 1 2.9632 -1.3038 4.2231
43 1 1.2789 -0.4389 5.7934
44 1 -0.0217 1.5693 5.2370
45 1 -2.0342 5.7767 2.2398
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000919927728.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:25
Heat of formation + Delta-G solvation = -97.581388 kcal
Electronic energy + Delta-G solvation = -27877.695845 eV
Core-core repulsion = 24053.400105 eV
Total energy + Delta-G solvation = -3824.295740 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.65220 -40.58563 -39.70398 -38.06371 -37.04847 -34.35459 -34.15086 -32.06534
-31.39043 -30.64867 -30.06332 -27.53175 -26.95882 -25.13396 -23.61358 -23.49031
-23.09635 -21.68727 -20.43265 -19.91569 -18.74735 -17.99765 -17.48005 -17.43050
-17.06001 -16.54342 -16.39294 -15.95587 -15.75231 -15.57817 -15.40236 -15.24524
-14.81606 -14.55558 -14.44370 -14.19991 -13.85819 -13.58442 -13.52425 -13.32445
-13.13559 -12.87942 -12.74006 -12.55882 -12.50965 -12.38260 -12.27225 -12.15234
-12.07067 -11.87242 -11.57881 -11.45911 -10.85389 -10.70978 -10.63924 -9.87153
-9.58010 -9.05244 -8.49181 -6.19211 0.26185 0.70474 1.31172 1.41813
1.49625 1.73866 2.08684 2.13937 2.80482 2.99879 3.13970 3.40811
3.55238 3.62671 3.75958 3.88993 4.02052 4.10268 4.19668 4.24379
4.27553 4.29951 4.32735 4.48796 4.54065 4.60172 4.70836 4.71470
4.73939 4.83473 4.88034 4.90197 4.94282 4.96184 5.04890 5.07303
5.12608 5.14627 5.31402 5.50711 5.57361 5.67173 5.70022 5.90264
5.94480 6.15758 6.39555 6.92907 7.26672 7.74851 8.72855
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.015337 B = 0.004045 C = 0.003508
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1825.250888 B = 6921.158602 C = 7980.911528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.098 3.902
3 N -0.607 5.607
4 C 0.127 3.873
5 C -0.134 4.134
6 H 0.061 0.939
7 C -0.145 4.145
8 C 0.047 3.953
9 O -0.394 6.394
10 C 0.054 3.946
11 C 0.573 3.427
12 O -0.583 6.583
13 C -0.224 4.224
14 C -0.040 4.040
15 C -0.189 4.189
16 C -0.048 4.048
17 C -0.249 4.249
18 C 0.146 3.854
19 O -0.215 6.215
20 C -0.419 4.419
21 H 0.107 0.893
22 C -0.022 4.022
23 N -0.915 5.915
24 Si 1.020 2.980
25 H -0.265 1.265
26 H -0.272 1.272
27 H -0.247 1.247
28 H 0.095 0.905
29 H 0.017 0.983
30 H 0.050 0.950
31 H 0.116 0.884
32 H 0.096 0.904
33 H 0.106 0.894
34 H 0.047 0.953
35 H 0.088 0.912
36 H 0.085 0.915
37 H 0.065 0.935
38 H 0.113 0.887
39 H 0.059 0.941
40 H 0.099 0.901
41 H 0.152 0.848
42 H 0.164 0.836
43 H 0.153 0.847
44 H 0.123 0.877
45 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.852 -14.648 -6.619 18.350
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.023 4.023
3 N -0.339 5.339
4 C 0.005 3.995
5 C -0.154 4.154
6 H 0.080 0.920
7 C -0.183 4.183
8 C -0.029 4.029
9 O -0.313 6.313
10 C -0.022 4.022
11 C 0.363 3.637
12 O -0.462 6.462
13 C -0.228 4.228
14 C -0.058 4.058
15 C -0.207 4.207
16 C -0.066 4.066
17 C -0.269 4.269
18 C 0.093 3.907
19 O -0.119 6.119
20 C -0.495 4.495
21 H 0.124 0.876
22 C -0.220 4.220
23 N -0.552 5.552
24 Si 0.839 3.161
25 H -0.190 1.190
26 H -0.197 1.197
27 H -0.170 1.170
28 H 0.113 0.887
29 H 0.037 0.963
30 H 0.070 0.930
31 H 0.134 0.866
32 H 0.114 0.886
33 H 0.124 0.876
34 H 0.066 0.934
35 H 0.107 0.893
36 H 0.103 0.897
37 H 0.083 0.917
38 H 0.131 0.869
39 H 0.077 0.923
40 H 0.117 0.883
41 H 0.170 0.830
42 H 0.181 0.819
43 H 0.171 0.829
44 H 0.140 0.860
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 8.924 -13.906 -7.058 17.968
hybrid contribution -0.919 1.432 0.731 1.852
sum 8.006 -12.474 -6.327 16.116
Atomic orbital electron populations
1.22143 0.96653 1.03013 1.00610 1.22072 0.94107 0.80907 1.05225
1.47951 1.65249 1.15381 1.05320 1.21481 0.94431 0.98170 0.85460
1.22849 0.96206 0.97415 0.98967 0.92016 1.23151 1.00288 1.00159
0.94698 1.23685 0.96179 0.81839 1.01177 1.88833 1.79306 1.31352
1.31844 1.23332 0.98807 0.95045 0.85056 1.18494 0.75037 0.85274
0.84906 1.90727 1.49524 1.17862 1.88114 1.19088 1.05579 1.02221
0.95930 1.21105 0.96388 0.90617 0.97727 1.21142 1.01879 1.03255
0.94415 1.21380 0.92767 0.92822 0.99653 1.21287 1.06797 1.01155
0.97620 1.19872 0.91134 0.86306 0.93393 1.83996 1.42697 1.36798
1.48438 1.21927 1.08549 1.17038 1.01987 0.87621 1.26678 1.00910
0.95213 0.99174 1.70248 1.39181 1.20698 1.25079 0.84582 0.75558
0.79403 0.76603 1.18985 1.19650 1.16981 0.88655 0.96336 0.93049
0.86636 0.88601 0.87604 0.93399 0.89303 0.89669 0.91706 0.86863
0.92275 0.88304 0.83014 0.81867 0.82911 0.85973 0.91993
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.73 10.20 71.98 0.73 -4.00 16
2 C 0.10 2.45 5.17 86.38 0.45 2.89 16
3 N -0.61 -20.47 2.26 -825.57 -1.87 -22.33 16
4 C 0.13 3.80 4.72 86.38 0.41 4.21 16
5 C -0.13 -3.39 3.29 -9.80 -0.03 -3.43 16
6 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
7 C -0.14 -2.85 6.71 31.89 0.21 -2.64 16
8 C 0.05 0.82 7.72 72.67 0.56 1.38 16
9 O -0.39 -8.68 11.52 -148.98 -1.72 -10.39 16
10 C 0.05 1.16 7.13 72.35 0.52 1.68 16
11 C 0.57 26.00 6.65 86.69 0.58 26.58 16
12 O -0.58 -32.96 16.52 -3.24 -0.05 -33.01 16
13 C -0.22 -9.63 4.79 -19.99 -0.10 -9.72 16
14 C -0.04 -1.23 7.62 22.52 0.17 -1.06 16
15 C -0.19 -5.00 10.02 22.25 0.22 -4.77 16
16 C -0.05 -1.48 10.03 22.30 0.22 -1.25 16
17 C -0.25 -10.51 9.16 22.36 0.20 -10.30 16
18 C 0.15 7.39 6.65 22.90 0.15 7.55 16
19 O -0.21 -13.44 9.03 -19.39 -0.18 -13.62 16
20 C -0.42 -25.00 9.49 67.93 0.64 -24.36 16
21 H 0.11 5.67 5.20 -2.91 -0.02 5.66 16
22 C -0.02 -1.26 5.49 84.85 0.47 -0.80 16
23 N -0.92 -58.87 13.67 21.62 0.30 -58.57 16
24 Si 1.02 43.81 29.55 68.60 2.03 45.83 16
25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16
26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16
27 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16
28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16
29 H 0.02 0.69 8.00 -2.39 -0.02 0.67 16
30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
31 H 0.12 2.00 5.97 -2.39 -0.01 1.98 16
32 H 0.10 2.23 4.67 -2.39 -0.01 2.22 16
33 H 0.11 2.51 7.99 -2.38 -0.02 2.49 16
34 H 0.05 1.79 7.56 -2.39 -0.02 1.77 16
35 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16
36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
38 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16
39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
40 H 0.10 1.89 4.63 -2.39 -0.01 1.88 16
41 H 0.15 3.54 7.47 -2.91 -0.02 3.51 16
42 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16
43 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16
44 H 0.12 5.24 5.64 -2.91 -0.02 5.23 16
45 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16
Total: -1.00 -85.66 365.13 4.93 -80.73
By element:
Atomic # 1 Polarization: 28.41 SS G_CDS: 1.00 Total: 29.41 kcal
Atomic # 6 Polarization: -23.47 SS G_CDS: 5.41 Total: -18.05 kcal
Atomic # 7 Polarization: -79.33 SS G_CDS: -1.57 Total: -80.90 kcal
Atomic # 8 Polarization: -55.08 SS G_CDS: -1.94 Total: -57.02 kcal
Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal
Total: -85.66 4.93 -80.73 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000919927728.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.850 kcal
(2) G-P(sol) polarization free energy of solvation -85.660 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.510 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.581 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds