Wall clock time and date at job start Tue Mar 31 2020 13:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47051 * 2 1 4 4 C 1.34237 * 116.99812 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00026 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00176 * 179.97438 * 4 3 2 7 7 N 1.46906 * 110.26633 * 35.75092 * 6 4 3 8 8 C 1.46902 * 110.99574 * 55.11186 * 7 6 4 9 9 C 1.53006 * 109.46594 * 177.87596 * 8 7 6 10 10 H 1.08996 * 109.47374 * 60.00452 * 9 8 7 11 11 O 1.42894 * 109.47495 * 300.00120 * 9 8 7 12 12 C 1.50705 * 109.46907 * 180.02562 * 9 8 7 13 13 H 1.08004 * 120.00069 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00159 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99586 * 0.02562 * 14 12 9 16 16 Si 1.86793 * 120.00146 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47169 * 270.00427 * 16 14 12 18 18 H 1.48496 * 109.47078 * 150.00340 * 16 14 12 19 19 H 1.48505 * 109.47243 * 30.00127 * 16 14 12 20 20 C 1.54338 * 110.38805 * 157.88118 * 6 4 3 21 21 C 1.54346 * 102.39525 * 145.31533 * 20 6 4 22 22 C 1.51375 * 105.16469 * 333.65415 * 21 20 6 23 23 C 1.38501 * 130.38404 * 197.16520 * 22 21 20 24 24 C 1.38105 * 120.21075 * 180.02562 * 23 22 21 25 25 C 1.38250 * 119.93724 * 359.97438 * 24 23 22 26 26 C 1.38102 * 119.93408 * 359.97438 * 25 24 23 27 27 C 1.38208 * 109.76122 * 17.19264 * 22 21 20 28 28 H 1.09004 * 109.47075 * 59.99431 * 1 2 3 29 29 H 1.08995 * 109.47347 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46956 * 300.00114 * 1 2 3 31 31 H 1.08998 * 109.46864 * 240.00426 * 2 1 3 32 32 H 1.08995 * 109.47189 * 120.00406 * 2 1 3 33 33 H 1.00903 * 111.00162 * 179.06681 * 7 6 4 34 34 H 1.09000 * 109.47117 * 57.88452 * 8 7 6 35 35 H 1.08991 * 109.47452 * 297.87528 * 8 7 6 36 36 H 0.96704 * 114.00176 * 300.00295 * 11 9 8 37 37 H 0.97001 * 120.00176 * 359.97438 * 15 14 12 38 38 H 1.09002 * 110.82306 * 263.54408 * 20 6 4 39 39 H 1.09004 * 110.82025 * 27.08535 * 20 6 4 40 40 H 1.09000 * 110.30455 * 214.73215 * 21 20 6 41 41 H 1.08998 * 110.30254 * 92.57376 * 21 20 6 42 42 H 1.08003 * 119.89482 * 0.02562 * 23 22 21 43 43 H 1.07998 * 120.02795 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.03498 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.89237 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 7 3.0815 3.8356 0.8042 8 6 2.9025 3.3111 2.1647 9 6 2.0692 4.2972 2.9858 10 1 1.0945 4.4285 2.5160 11 8 2.7428 5.5560 3.0454 12 6 1.8861 3.7594 4.3817 13 1 2.3210 2.8096 4.6559 14 6 1.1643 4.4805 5.3091 15 7 0.6352 5.6373 4.9754 16 14 0.9379 3.8144 7.0395 17 1 -0.2930 2.9855 7.0938 18 1 0.8153 4.9458 7.9934 19 1 2.1117 2.9821 7.4070 20 6 5.3646 2.9222 0.5454 21 6 6.0479 4.0215 -0.2953 22 6 5.2602 4.0796 -1.5866 23 6 5.5871 4.6341 -2.8130 24 6 4.6959 4.5664 -3.8659 25 6 3.4737 3.9429 -3.6964 26 6 3.1465 3.3885 -2.4746 27 6 4.0381 3.4568 -1.4169 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.4657 4.7684 0.8239 34 1 3.8772 3.1798 2.6346 35 1 2.3887 2.3509 2.1193 36 1 3.6188 5.5145 3.4527 37 1 0.7531 5.9834 4.0769 38 1 5.3812 3.1780 1.6049 39 1 5.8340 1.9538 0.3722 40 1 7.0851 3.7538 -0.4967 41 1 5.9972 4.9796 0.2220 42 1 6.5419 5.1209 -2.9463 43 1 4.9537 5.0001 -4.8208 44 1 2.7758 3.8887 -4.5189 45 1 2.1917 2.9012 -2.3431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929989982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:01 Heat of formation + Delta-G solvation = -136.170712 kcal Electronic energy + Delta-G solvation = -27996.072312 eV Core-core repulsion = 24170.103214 eV Total energy + Delta-G solvation = -3825.969098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45158 -40.71543 -38.80774 -37.96526 -37.14212 -34.56966 -34.24390 -32.72945 -32.20598 -30.10595 -29.79945 -27.97854 -25.73453 -24.87040 -23.86470 -23.25388 -22.79229 -21.91159 -20.91119 -19.50707 -18.77381 -18.37866 -17.75980 -17.14000 -17.03195 -16.41847 -16.26469 -16.11867 -15.68228 -15.51443 -15.16286 -14.98787 -14.88996 -14.46461 -14.21870 -14.18736 -13.87819 -13.78887 -13.72877 -13.24272 -12.99048 -12.94888 -12.82821 -12.61687 -12.57169 -12.34659 -12.20868 -12.04647 -11.93805 -11.90618 -11.60582 -11.54549 -11.28379 -10.63918 -10.18573 -9.85521 -9.69528 -9.47564 -8.62312 -6.47402 0.23932 0.40909 0.93446 1.52680 1.58642 1.60500 1.78604 2.53029 2.67987 2.99860 3.11604 3.16646 3.39143 3.59557 3.88568 3.90423 3.97382 3.98368 3.99940 4.09407 4.16076 4.22251 4.23431 4.26486 4.32743 4.56088 4.65740 4.69019 4.73720 4.78741 4.83318 4.89023 4.93707 5.00329 5.05461 5.13045 5.32569 5.39238 5.47590 5.54035 5.58735 5.66932 5.85030 6.02361 6.11088 6.24369 6.55901 6.57932 7.14964 7.48563 8.75946 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004297 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.895966 B = 6514.953658 C = 7583.765738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.346 6.346 4 C 0.482 3.518 5 O -0.532 6.532 6 C 0.164 3.836 7 N -0.657 5.657 8 C 0.059 3.941 9 C 0.225 3.775 10 H 0.023 0.977 11 O -0.586 6.586 12 C -0.660 4.660 13 H 0.046 0.954 14 C -0.012 4.012 15 N -0.917 5.917 16 Si 1.116 2.884 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.271 1.271 20 C -0.147 4.147 21 C -0.073 4.073 22 C -0.091 4.091 23 C -0.112 4.112 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.102 4.102 27 C -0.112 4.112 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.357 0.643 34 H 0.032 0.968 35 H 0.054 0.946 36 H 0.363 0.637 37 H 0.269 0.731 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -6.043 -17.022 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.262 6.262 4 C 0.326 3.674 5 O -0.422 6.422 6 C 0.071 3.929 7 N -0.291 5.291 8 C -0.070 4.070 9 C 0.168 3.832 10 H 0.041 0.959 11 O -0.391 6.391 12 C -0.698 4.698 13 H 0.064 0.936 14 C -0.215 4.215 15 N -0.553 5.553 16 Si 0.938 3.062 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.196 1.196 20 C -0.186 4.186 21 C -0.110 4.110 22 C -0.092 4.092 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.121 4.121 27 C -0.112 4.112 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.179 0.821 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.209 0.791 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.169 0.831 43 H 0.177 0.823 44 H 0.167 0.833 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.334 -6.094 -16.102 18.714 hybrid contribution 1.554 -0.732 -0.580 1.813 sum 8.888 -6.826 -16.682 20.097 Atomic orbital electron populations 1.21803 0.90586 1.04431 1.03329 1.23336 0.97247 0.79529 1.02390 1.86697 1.23614 1.33270 1.82593 1.23663 0.81007 0.92059 0.70674 1.90584 1.61106 1.43233 1.47269 1.20330 0.92194 0.86691 0.93659 1.60505 1.50566 1.05246 1.12757 1.22437 0.98419 0.98746 0.87429 1.19267 0.90419 0.80706 0.92835 0.95930 1.86454 1.34313 1.34876 1.83453 1.22764 1.39689 1.08481 0.98849 0.93550 1.27218 0.91772 0.94149 1.08344 1.70741 1.42559 1.19041 1.22942 0.82963 0.77255 0.75344 0.70667 1.20036 1.20804 1.19593 1.23049 0.92888 1.01820 1.00848 1.21057 0.99940 0.98769 0.91207 1.20779 0.94627 0.97542 0.96220 1.20966 1.01276 0.99755 0.90954 1.21519 0.93118 0.97777 0.99867 1.21359 0.98185 0.98233 0.96634 1.20835 0.98497 0.99751 0.93007 1.19968 0.96647 1.02345 0.92259 0.90999 0.87432 0.92699 0.90458 0.92000 0.82111 0.95039 0.92729 0.79128 0.92037 0.89744 0.89432 0.87597 0.88717 0.83108 0.82321 0.83340 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 10.29 71.98 0.74 -2.51 16 2 C 0.05 1.35 6.19 71.98 0.45 1.80 16 3 O -0.35 -12.22 9.01 -51.48 -0.46 -12.69 16 4 C 0.48 17.36 5.44 71.24 0.39 17.75 16 5 O -0.53 -20.30 15.36 21.97 0.34 -19.96 16 6 C 0.16 5.33 0.74 2.70 0.00 5.34 16 7 N -0.66 -24.20 5.97 -474.28 -2.83 -27.03 16 8 C 0.06 2.48 4.70 86.30 0.41 2.89 16 9 C 0.23 11.48 2.70 29.85 0.08 11.56 16 10 H 0.02 1.33 8.01 -2.39 -0.02 1.31 16 11 O -0.59 -28.64 11.31 -148.98 -1.69 -30.32 16 12 C -0.66 -36.79 8.76 25.60 0.22 -36.57 16 13 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 14 C -0.01 -0.69 5.40 84.66 0.46 -0.23 16 15 N -0.92 -56.46 13.53 21.45 0.29 -56.17 16 16 Si 1.12 49.79 29.90 68.60 2.05 51.84 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 C -0.15 -4.15 5.96 31.51 0.19 -3.96 16 21 C -0.07 -1.59 6.77 30.52 0.21 -1.39 16 22 C -0.09 -2.20 6.14 -19.59 -0.12 -2.32 16 23 C -0.11 -2.11 10.04 22.30 0.22 -1.88 16 24 C -0.11 -1.81 10.05 22.24 0.22 -1.59 16 25 C -0.13 -2.59 10.05 22.24 0.22 -2.37 16 26 C -0.10 -2.78 9.77 22.30 0.22 -2.57 16 27 C -0.11 -3.26 5.20 -19.60 -0.10 -3.36 16 28 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 32 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 33 H 0.36 12.88 8.06 -89.69 -0.72 12.16 16 34 H 0.03 1.29 6.30 -2.39 -0.02 1.27 16 35 H 0.05 2.48 6.41 -2.39 -0.02 2.46 16 36 H 0.36 15.54 9.04 -74.05 -0.67 14.87 16 37 H 0.27 17.11 6.47 -92.71 -0.60 16.51 16 38 H 0.08 2.44 6.20 -2.39 -0.01 2.42 16 39 H 0.09 2.58 6.92 -2.39 -0.02 2.56 16 40 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.11 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -71.32 368.96 1.30 -70.02 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: -0.20 Total: 43.73 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 3.80 Total: -19.41 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -2.54 Total: -83.21 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -1.81 Total: -62.97 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.05 Total: 51.84 kcal Total: -71.32 1.30 -70.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929989982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.148 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds