Wall clock time and date at job start Tue Mar 31 2020 13:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45207 * 109.47130 * 2 1 4 4 C 1.34227 * 116.99981 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99736 * 179.97438 * 4 3 2 7 7 H 1.09003 * 110.35534 * 302.13902 * 6 4 3 8 8 C 1.54594 * 110.30949 * 64.28385 * 6 4 3 9 9 C 1.54942 * 102.92403 * 140.87277 * 8 6 4 10 10 N 1.48537 * 103.22302 * 322.58415 * 9 8 6 11 11 C 1.46900 * 110.99475 * 159.72159 * 10 9 8 12 12 C 1.50698 * 109.47360 * 52.60389 * 11 10 9 13 13 C 1.38297 * 119.92955 * 89.99891 * 12 11 10 14 14 C 1.38095 * 120.07045 * 179.97438 * 13 12 11 15 15 C 1.38880 * 119.93329 * 0.02562 * 14 13 12 16 16 O 1.35747 * 120.07665 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99336 * 5.53207 * 16 15 14 18 18 H 1.07999 * 120.00433 * 354.94914 * 17 16 15 19 19 C 1.38659 * 119.99510 * 174.94088 * 17 16 15 20 20 N 1.31553 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47160 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.46871 * 300.00279 * 21 19 17 24 24 H 1.48500 * 109.47284 * 60.00125 * 21 19 17 25 25 C 1.38884 * 119.85707 * 0.27286 * 15 14 13 26 26 C 1.38101 * 119.92960 * 359.40508 * 25 15 14 27 27 C 1.47904 * 105.82042 * 39.20966 * 10 9 8 28 28 H 1.09005 * 109.46854 * 300.00018 * 1 2 3 29 29 H 1.08994 * 109.47307 * 59.99932 * 1 2 3 30 30 H 1.09003 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47354 * 239.99932 * 2 1 3 32 32 H 1.09002 * 109.47452 * 119.99465 * 2 1 3 33 33 H 1.09003 * 110.72640 * 259.23185 * 8 6 4 34 34 H 1.09004 * 110.72516 * 22.33620 * 8 6 4 35 35 H 1.08998 * 110.66511 * 204.15152 * 9 8 6 36 36 H 1.08991 * 110.66705 * 81.01848 * 9 8 6 37 37 H 1.09003 * 109.47212 * 292.60329 * 11 10 9 38 38 H 1.09002 * 109.46870 * 172.60478 * 11 10 9 39 39 H 1.08003 * 119.96594 * 0.02562 * 13 12 11 40 40 H 1.08001 * 120.03823 * 180.02562 * 14 13 12 41 41 H 0.97006 * 119.99673 * 359.97438 * 20 19 17 42 42 H 1.07995 * 120.03547 * 179.72775 * 25 15 14 43 43 H 1.08005 * 119.96532 * 180.31423 * 26 25 15 44 44 H 1.09001 * 109.91755 * 94.01926 * 27 10 9 45 45 H 1.08997 * 109.91693 * 215.31330 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5629 3.4954 -0.8665 8 6 3.5449 3.6741 1.3050 9 6 4.8370 4.4590 1.6443 10 7 5.9183 3.5200 1.2500 11 6 7.1854 4.2337 1.0425 12 6 7.4954 5.0704 2.2568 13 6 8.2348 4.5330 3.2947 14 6 8.5211 5.2974 4.4086 15 6 8.0652 6.6069 4.4863 16 8 8.3454 7.3610 5.5797 17 6 9.1657 6.8197 6.5027 18 1 9.5022 5.7992 6.3940 19 6 9.5774 7.5732 7.5914 20 7 9.1673 8.8161 7.7241 21 14 10.7144 6.8235 8.8699 22 1 11.0032 7.8275 9.9251 23 1 10.0598 5.6386 9.4805 24 1 11.9837 6.4080 8.2206 25 6 7.3177 7.1417 3.4451 26 6 7.0404 6.3743 2.3309 27 6 5.4595 2.8794 -0.0017 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.7119 4.3568 1.1369 34 1 3.3046 2.9617 2.0942 35 1 4.8862 4.6762 2.7113 36 1 4.8935 5.3777 1.0606 37 1 7.0998 4.8794 0.1685 38 1 7.9870 3.5122 0.8840 39 1 8.5894 3.5147 3.2336 40 1 9.0989 4.8773 5.2186 41 1 8.5771 9.2056 7.0599 42 1 6.9580 8.1583 3.5045 43 1 6.4634 6.7913 1.5187 44 1 5.8513 3.4223 -0.8619 45 1 5.7920 1.8418 -0.0312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932646418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:44 Heat of formation + Delta-G solvation = -110.356934 kcal Electronic energy + Delta-G solvation = -25982.577085 eV Core-core repulsion = 22157.727357 eV Total energy + Delta-G solvation = -3824.849729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84075 -40.98083 -39.81428 -38.29067 -37.57565 -34.57708 -33.83282 -32.55002 -31.88619 -30.57683 -30.06447 -27.24402 -26.17071 -24.76360 -23.70672 -23.20725 -22.73318 -21.57123 -21.06435 -20.26085 -18.97759 -18.70581 -17.73002 -17.65780 -17.03654 -16.89144 -16.29521 -15.69099 -15.65890 -15.58687 -15.30603 -15.11540 -15.00252 -14.78765 -14.46439 -14.04837 -13.90605 -13.55844 -13.34772 -13.01373 -12.94938 -12.83263 -12.77592 -12.59295 -12.43573 -12.39133 -12.29974 -12.12858 -11.94356 -11.89321 -11.83652 -11.55252 -11.40275 -11.26627 -10.75795 -9.83415 -9.39128 -8.97959 -8.92598 -6.24478 0.53612 0.59995 1.11246 1.48108 1.60048 1.61845 1.78165 2.35144 2.73577 3.04503 3.24711 3.32613 3.37523 3.53989 3.78149 3.97825 3.99214 4.00025 4.06582 4.13254 4.16347 4.29162 4.33034 4.38483 4.41019 4.53473 4.63100 4.70918 4.77931 4.81461 4.90216 4.91205 4.98772 5.00232 5.02299 5.07416 5.14511 5.22200 5.25014 5.43927 5.49829 5.71337 5.75342 5.94771 6.02502 6.08997 6.29539 6.67486 6.85967 7.62199 8.50296 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023455 B = 0.002192 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.481154 B =12769.733045 C =13038.402840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.472 3.528 5 O -0.536 6.536 6 C -0.087 4.087 7 H 0.146 0.854 8 C -0.104 4.104 9 C 0.037 3.963 10 N -0.530 5.530 11 C 0.107 3.893 12 C -0.153 4.153 13 C -0.054 4.054 14 C -0.243 4.243 15 C 0.116 3.884 16 O -0.252 6.252 17 C -0.487 4.487 18 H 0.089 0.911 19 C -0.045 4.045 20 N -0.916 5.916 21 Si 1.144 2.856 22 H -0.272 1.272 23 H -0.261 1.261 24 H -0.261 1.261 25 C -0.201 4.201 26 C -0.054 4.054 27 C 0.041 3.959 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.260 0.740 42 H 0.117 0.883 43 H 0.151 0.849 44 H 0.078 0.922 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.067 -14.667 -19.988 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.317 3.683 5 O -0.426 6.426 6 C -0.107 4.107 7 H 0.164 0.836 8 C -0.142 4.142 9 C -0.091 4.091 10 N -0.255 5.255 11 C -0.020 4.020 12 C -0.154 4.154 13 C -0.072 4.072 14 C -0.262 4.262 15 C 0.066 3.934 16 O -0.160 6.160 17 C -0.563 4.563 18 H 0.106 0.894 19 C -0.241 4.241 20 N -0.551 5.551 21 Si 0.960 3.040 22 H -0.197 1.197 23 H -0.186 1.186 24 H -0.185 1.185 25 C -0.221 4.221 26 C -0.072 4.072 27 C -0.086 4.086 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.131 0.869 41 H 0.069 0.931 42 H 0.135 0.865 43 H 0.169 0.831 44 H 0.096 0.904 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.053 -14.830 -18.113 27.304 hybrid contribution -0.703 0.220 -1.591 1.753 sum -14.756 -14.611 -19.704 28.627 Atomic orbital electron populations 1.21821 0.90393 1.04330 1.03776 1.23281 0.97115 0.79320 1.02402 1.86511 1.23849 1.33549 1.83556 1.23873 0.80643 0.92901 0.70919 1.90647 1.61009 1.44165 1.46739 1.21995 0.95867 0.89562 1.03232 0.83617 1.22459 0.98402 0.98943 0.94354 1.23256 0.89689 0.94853 1.01259 1.64890 1.02815 1.28640 1.29138 1.21023 0.92327 0.95284 0.93393 1.19576 1.03315 0.94807 0.97693 1.20908 0.95833 0.98781 0.91703 1.21244 1.08521 0.94801 1.01619 1.19845 0.94850 0.91267 0.87420 1.83639 1.61034 1.43440 1.27862 1.22553 1.28522 1.00803 1.04378 0.89364 1.28361 1.00642 0.94919 1.00185 1.70715 1.32926 1.14363 1.37109 0.82595 0.73786 0.75084 0.72568 1.19702 1.18598 1.18540 1.20451 1.05931 1.01336 0.94344 1.20905 0.97312 0.92991 0.96007 1.22958 0.91782 1.01853 0.92025 0.91473 0.90923 0.88364 0.91098 0.91931 0.87129 0.91925 0.91641 0.91393 0.91848 0.89697 0.85015 0.86936 0.93146 0.86530 0.83117 0.90398 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 71.98 0.74 -0.49 16 2 C 0.05 0.75 6.19 71.98 0.45 1.19 16 3 O -0.36 -6.35 10.22 -51.39 -0.53 -6.88 16 4 C 0.47 9.56 7.12 71.24 0.51 10.06 16 5 O -0.54 -14.31 14.99 21.96 0.33 -13.98 16 6 C -0.09 -1.34 3.49 -10.66 -0.04 -1.38 16 7 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 8 C -0.10 -1.69 6.60 31.80 0.21 -1.48 16 9 C 0.04 0.75 4.97 86.65 0.43 1.18 16 10 N -0.53 -12.00 5.39 -887.55 -4.78 -16.78 16 11 C 0.11 2.40 5.18 85.56 0.44 2.85 16 12 C -0.15 -4.62 4.60 -19.84 -0.09 -4.71 16 13 C -0.05 -1.92 9.69 22.25 0.22 -1.70 16 14 C -0.24 -10.89 9.17 22.39 0.21 -10.68 16 15 C 0.12 5.77 6.65 22.58 0.15 5.92 16 16 O -0.25 -15.11 9.16 -22.72 -0.21 -15.32 16 17 C -0.49 -28.93 9.49 67.92 0.64 -28.28 16 18 H 0.09 4.93 5.20 -2.91 -0.02 4.92 16 19 C -0.04 -2.62 5.49 84.84 0.47 -2.15 16 20 N -0.92 -57.81 13.70 21.61 0.30 -57.52 16 21 Si 1.14 48.91 29.92 68.60 2.05 50.97 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 25 C -0.20 -8.22 9.99 22.39 0.22 -8.00 16 26 C -0.05 -1.67 8.33 22.25 0.19 -1.48 16 27 C 0.04 0.75 6.30 86.45 0.54 1.30 16 28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 32 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.24 7.86 -2.39 -0.02 1.22 16 35 H 0.07 1.71 7.73 -2.39 -0.02 1.69 16 36 H 0.07 1.15 7.09 -2.39 -0.02 1.14 16 37 H 0.06 1.15 7.75 -2.39 -0.02 1.13 16 38 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 39 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.11 5.28 5.64 -2.91 -0.02 5.26 16 41 H 0.26 17.06 7.97 -92.70 -0.74 16.33 16 42 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 43 H 0.15 3.44 7.38 -2.91 -0.02 3.42 16 44 H 0.08 1.07 7.57 -2.39 -0.02 1.05 16 45 H 0.08 1.89 6.42 -2.39 -0.02 1.88 16 Total: -1.00 -76.02 370.03 3.47 -72.55 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 1.02 Total: 24.80 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 5.28 Total: -37.84 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -4.49 Total: -74.30 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.40 Total: -36.18 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.05 Total: 50.97 kcal Total: -76.02 3.47 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932646418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.804 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds