Wall clock time and date at job start Tue Mar 31 2020 13:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47329 * 2 1 4 4 C 1.34231 * 117.00549 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99644 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99997 * 179.97438 * 4 3 2 7 7 H 1.08993 * 110.62960 * 56.89794 * 6 4 3 8 8 C 1.55135 * 110.85621 * 293.68375 * 6 4 3 9 9 C 1.54913 * 101.65240 * 205.89457 * 8 6 4 10 10 N 1.47846 * 104.79151 * 37.07430 * 9 8 6 11 11 C 1.46906 * 110.99470 * 213.63511 * 10 9 8 12 12 C 1.50705 * 109.47230 * 290.84144 * 11 10 9 13 13 C 1.38296 * 119.92993 * 269.73165 * 12 11 10 14 14 C 1.38109 * 120.06823 * 179.72285 * 13 12 11 15 15 C 1.38882 * 119.92641 * 0.57006 * 14 13 12 16 16 O 1.35751 * 120.06805 * 179.68335 * 15 14 13 17 17 C 1.34832 * 117.00050 * 174.48325 * 16 15 14 18 18 H 1.08001 * 119.99823 * 5.06169 * 17 16 15 19 19 C 1.38649 * 119.99788 * 185.05370 * 17 16 15 20 20 N 1.31555 * 120.00411 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47140 * 89.99966 * 21 19 17 23 23 H 1.48497 * 109.47196 * 210.00348 * 21 19 17 24 24 H 1.48506 * 109.46864 * 330.00451 * 21 19 17 25 25 C 1.38882 * 119.86421 * 359.70055 * 15 14 13 26 26 C 1.38101 * 119.92753 * 0.02562 * 25 15 14 27 27 C 1.47437 * 108.57060 * 335.90004 * 10 9 8 28 28 H 1.08995 * 109.46539 * 60.00740 * 1 2 3 29 29 H 1.09005 * 109.46881 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47388 * 300.00617 * 1 2 3 31 31 H 1.08995 * 109.47865 * 239.99213 * 2 1 3 32 32 H 1.09001 * 109.46962 * 119.99329 * 2 1 3 33 33 H 1.08997 * 110.99266 * 323.98940 * 8 6 4 34 34 H 1.09004 * 110.98967 * 87.77081 * 8 6 4 35 35 H 1.08997 * 110.37452 * 278.23946 * 9 8 6 36 36 H 1.09001 * 110.37149 * 155.90184 * 9 8 6 37 37 H 1.08998 * 109.47475 * 50.84341 * 11 10 9 38 38 H 1.08995 * 109.46859 * 170.84594 * 11 10 9 39 39 H 1.07997 * 119.96885 * 359.97438 * 13 12 11 40 40 H 1.07997 * 120.03699 * 180.27276 * 14 13 12 41 41 H 0.97002 * 120.00401 * 179.97438 * 20 19 17 42 42 H 1.07994 * 120.03846 * 180.02562 * 25 15 14 43 43 H 1.07996 * 119.96462 * 179.97438 * 26 25 15 44 44 H 1.08997 * 109.88680 * 120.39629 * 27 10 9 45 45 H 1.08994 * 109.89045 * 241.42764 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5522 3.5057 0.8540 8 6 3.5943 3.6696 -1.3282 9 6 4.7569 4.6895 -1.4172 10 7 5.9338 3.9673 -0.8889 11 6 6.8363 4.8817 -0.1765 12 6 7.4864 5.8165 -1.1639 13 6 8.6875 5.4694 -1.7549 14 6 9.2829 6.3213 -2.6644 15 6 8.6799 7.5329 -2.9764 16 8 9.2659 8.3753 -3.8651 17 6 8.5738 9.4801 -4.2092 18 1 7.6366 9.7040 -3.7213 19 6 9.0653 10.3287 -5.1893 20 7 10.2067 10.0558 -5.7838 21 14 8.1068 11.8598 -5.6655 22 1 8.5372 12.9979 -4.8142 23 1 8.3661 12.1825 -7.0916 24 1 6.6552 11.6160 -5.4691 25 6 7.4765 7.8810 -2.3769 26 6 6.8834 7.0223 -1.4725 27 6 5.4632 2.8899 0.0008 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 3.6159 2.9784 -2.1707 34 1 2.6320 4.1780 -1.2675 35 1 4.5418 5.5646 -0.8039 36 1 4.9255 4.9833 -2.4532 37 1 6.2673 5.4603 0.5512 38 1 7.6050 4.3055 0.3385 39 1 9.1585 4.5294 -1.5080 40 1 10.2187 6.0477 -3.1290 41 1 10.5504 10.6494 -6.4698 42 1 7.0050 8.8223 -2.6177 43 1 5.9479 7.2926 -1.0057 44 1 5.8046 1.9247 -0.3731 45 1 5.8410 3.0511 1.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932646419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:47 Heat of formation + Delta-G solvation = -85.029540 kcal Electronic energy + Delta-G solvation = -25813.086014 eV Core-core repulsion = 21989.334564 eV Total energy + Delta-G solvation = -3823.751451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99903 -39.34900 -38.56635 -36.94803 -36.37414 -33.05743 -32.24754 -31.86577 -30.18568 -29.28096 -29.17473 -25.78659 -24.83689 -23.96053 -22.62017 -21.97133 -21.28973 -20.42449 -20.20688 -18.17991 -17.95338 -17.05537 -16.89594 -16.79734 -15.99846 -15.10410 -14.74445 -14.54438 -14.49349 -14.17682 -13.98729 -13.67005 -13.56927 -13.46081 -13.25481 -12.86238 -12.76463 -12.61830 -12.32466 -12.20862 -12.09549 -11.85928 -11.69592 -11.60844 -11.35147 -11.21425 -11.05047 -10.90538 -10.74926 -10.61175 -10.59778 -10.48654 -10.41145 -9.31057 -8.82505 -8.29697 -8.13651 -7.15365 -6.43702 -4.02566 1.89818 2.24842 2.26198 2.34805 3.12773 3.13813 3.18646 3.94080 3.97635 4.17673 4.27840 4.48892 4.52254 4.57255 4.71062 4.78521 4.85036 5.07775 5.11070 5.14516 5.25927 5.27387 5.32322 5.34417 5.36731 5.49136 5.54050 5.59558 5.72371 5.79275 5.85611 5.88650 5.93082 6.04201 6.12086 6.24353 6.44671 6.73387 6.91069 6.92814 7.06719 7.11122 7.29383 7.42305 7.44775 7.46743 7.85898 8.01324 9.01926 9.72831 10.74364 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.002162 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.606699 B =12949.075407 C =13679.850348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.475 3.525 5 O -0.503 6.503 6 C -0.107 4.107 7 H 0.112 0.888 8 C -0.115 4.115 9 C 0.047 3.953 10 N -0.520 5.520 11 C 0.107 3.893 12 C -0.179 4.179 13 C -0.053 4.053 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.235 4.235 26 C -0.064 4.064 27 C 0.052 3.948 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.343 -14.890 12.573 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.317 3.683 5 O -0.391 6.391 6 C -0.127 4.127 7 H 0.130 0.870 8 C -0.153 4.153 9 C -0.081 4.081 10 N -0.244 5.244 11 C -0.019 4.019 12 C -0.180 4.180 13 C -0.071 4.071 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.254 4.254 26 C -0.083 4.083 27 C -0.076 4.076 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.480 -15.318 11.863 25.436 hybrid contribution -0.975 0.989 0.465 1.465 sum -17.455 -14.329 12.328 25.729 Atomic orbital electron populations 1.21808 0.92529 1.03025 1.03605 1.23046 0.95441 0.80189 1.02670 1.86515 1.24532 1.32428 1.83957 1.23447 0.80494 0.92350 0.71981 1.90667 1.60332 1.42984 1.45068 1.22336 0.97860 0.90421 1.02073 0.87012 1.22736 0.99585 0.98136 0.94843 1.23080 0.87860 0.94989 1.02140 1.63780 1.15293 1.11330 1.33970 1.21040 0.94954 0.92690 0.93257 1.19028 0.97886 0.96296 1.04793 1.20463 0.94380 0.97449 0.94850 1.20223 1.02763 0.94118 1.04227 1.19402 0.90989 0.89893 0.89528 1.83982 1.41978 1.30595 1.51652 1.21310 1.05655 0.98731 1.21046 0.89117 1.25284 0.96580 0.99215 0.95486 1.70038 1.18294 1.37247 1.24186 0.85722 0.79295 0.80251 0.78206 1.19920 1.20269 1.19226 1.21108 0.98767 1.02246 1.03272 1.20572 0.97781 0.93462 0.96511 1.22895 0.89610 0.98164 0.96902 0.91358 0.90194 0.91478 0.91127 0.91245 0.90146 0.89565 0.92988 0.89190 0.94693 0.90699 0.87071 0.86594 0.92046 0.85698 0.88020 0.88569 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.40 10.22 -39.26 -0.40 -3.80 16 4 C 0.47 5.09 7.27 36.00 0.26 5.36 16 5 O -0.50 -6.72 15.17 -18.75 -0.28 -7.00 16 6 C -0.11 -1.00 3.44 -89.95 -0.31 -1.31 16 7 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 8 C -0.11 -1.08 6.52 -24.59 -0.16 -1.24 16 9 C 0.05 0.54 5.61 -2.29 -0.01 0.53 16 10 N -0.52 -6.66 5.15 -232.69 -1.20 -7.86 16 11 C 0.11 1.42 4.72 -4.97 -0.02 1.40 16 12 C -0.18 -2.99 5.10 -104.58 -0.53 -3.53 16 13 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 14 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 15 C 0.16 3.77 6.65 -39.10 -0.26 3.51 16 16 O -0.18 -5.12 9.76 0.04 0.00 -5.12 16 17 C -0.39 -10.92 9.49 30.88 0.29 -10.63 16 18 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 21 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 26 C -0.06 -1.15 8.91 -39.61 -0.35 -1.50 16 27 C 0.05 0.57 6.29 -2.84 -0.02 0.56 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.57 6.99 -51.93 -0.36 0.20 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.42 7.79 -51.93 -0.40 0.02 16 38 H 0.07 0.93 7.97 -51.93 -0.41 0.51 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 43 H 0.10 1.53 7.48 -52.49 -0.39 1.14 16 44 H 0.10 1.21 6.81 -51.93 -0.35 0.86 16 45 H 0.06 0.61 7.54 -51.93 -0.39 0.21 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -32.05 372.68 -8.94 -40.98 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.67 Total: 3.16 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.74 Total: -16.84 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: -0.44 Total: -32.46 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.69 Total: -15.92 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.05 -8.94 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932646419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.045 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds