Wall clock time and date at job start Tue Mar 31 2020 13:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47329 * 2 1 4 4 C 1.34231 * 117.00549 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99644 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99997 * 179.97438 * 4 3 2 7 7 H 1.08993 * 110.62960 * 56.89794 * 6 4 3 8 8 C 1.55135 * 110.85621 * 293.68375 * 6 4 3 9 9 C 1.54913 * 101.65240 * 205.89457 * 8 6 4 10 10 N 1.47846 * 104.79151 * 37.07430 * 9 8 6 11 11 C 1.46906 * 110.99470 * 213.63511 * 10 9 8 12 12 C 1.50705 * 109.47230 * 290.84144 * 11 10 9 13 13 C 1.38296 * 119.92993 * 269.73165 * 12 11 10 14 14 C 1.38109 * 120.06823 * 179.72285 * 13 12 11 15 15 C 1.38882 * 119.92641 * 0.57006 * 14 13 12 16 16 O 1.35751 * 120.06805 * 179.68335 * 15 14 13 17 17 C 1.34832 * 117.00050 * 174.48325 * 16 15 14 18 18 H 1.08001 * 119.99823 * 5.06169 * 17 16 15 19 19 C 1.38649 * 119.99788 * 185.05370 * 17 16 15 20 20 N 1.31555 * 120.00411 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47140 * 89.99966 * 21 19 17 23 23 H 1.48497 * 109.47196 * 210.00348 * 21 19 17 24 24 H 1.48506 * 109.46864 * 330.00451 * 21 19 17 25 25 C 1.38882 * 119.86421 * 359.70055 * 15 14 13 26 26 C 1.38101 * 119.92753 * 0.02562 * 25 15 14 27 27 C 1.47437 * 108.57060 * 335.90004 * 10 9 8 28 28 H 1.08995 * 109.46539 * 60.00740 * 1 2 3 29 29 H 1.09005 * 109.46881 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47388 * 300.00617 * 1 2 3 31 31 H 1.08995 * 109.47865 * 239.99213 * 2 1 3 32 32 H 1.09001 * 109.46962 * 119.99329 * 2 1 3 33 33 H 1.08997 * 110.99266 * 323.98940 * 8 6 4 34 34 H 1.09004 * 110.98967 * 87.77081 * 8 6 4 35 35 H 1.08997 * 110.37452 * 278.23946 * 9 8 6 36 36 H 1.09001 * 110.37149 * 155.90184 * 9 8 6 37 37 H 1.08998 * 109.47475 * 50.84341 * 11 10 9 38 38 H 1.08995 * 109.46859 * 170.84594 * 11 10 9 39 39 H 1.07997 * 119.96885 * 359.97438 * 13 12 11 40 40 H 1.07997 * 120.03699 * 180.27276 * 14 13 12 41 41 H 0.97002 * 120.00401 * 179.97438 * 20 19 17 42 42 H 1.07994 * 120.03846 * 180.02562 * 25 15 14 43 43 H 1.07996 * 119.96462 * 179.97438 * 26 25 15 44 44 H 1.08997 * 109.88680 * 120.39629 * 27 10 9 45 45 H 1.08994 * 109.89045 * 241.42764 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5522 3.5057 0.8540 8 6 3.5943 3.6696 -1.3282 9 6 4.7569 4.6895 -1.4172 10 7 5.9338 3.9673 -0.8889 11 6 6.8363 4.8817 -0.1765 12 6 7.4864 5.8165 -1.1639 13 6 8.6875 5.4694 -1.7549 14 6 9.2829 6.3213 -2.6644 15 6 8.6799 7.5329 -2.9764 16 8 9.2659 8.3753 -3.8651 17 6 8.5738 9.4801 -4.2092 18 1 7.6366 9.7040 -3.7213 19 6 9.0653 10.3287 -5.1893 20 7 10.2067 10.0558 -5.7838 21 14 8.1068 11.8598 -5.6655 22 1 8.5372 12.9979 -4.8142 23 1 8.3661 12.1825 -7.0916 24 1 6.6552 11.6160 -5.4691 25 6 7.4765 7.8810 -2.3769 26 6 6.8834 7.0223 -1.4725 27 6 5.4632 2.8899 0.0008 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 3.6159 2.9784 -2.1707 34 1 2.6320 4.1780 -1.2675 35 1 4.5418 5.5646 -0.8039 36 1 4.9255 4.9833 -2.4532 37 1 6.2673 5.4603 0.5512 38 1 7.6050 4.3055 0.3385 39 1 9.1585 4.5294 -1.5080 40 1 10.2187 6.0477 -3.1290 41 1 10.5504 10.6494 -6.4698 42 1 7.0050 8.8223 -2.6177 43 1 5.9479 7.2926 -1.0057 44 1 5.8046 1.9247 -0.3731 45 1 5.8410 3.0511 1.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932646419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:47 Heat of formation + Delta-G solvation = -104.762339 kcal Electronic energy + Delta-G solvation = -25813.941693 eV Core-core repulsion = 21989.334564 eV Total energy + Delta-G solvation = -3824.607129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81186 -40.82802 -39.76757 -38.17472 -37.58443 -34.46072 -33.78378 -32.53991 -31.77439 -30.52836 -30.12971 -27.56136 -26.15143 -24.78140 -23.64771 -23.21986 -22.44675 -21.65355 -21.11613 -19.80606 -18.96808 -18.78225 -17.75724 -17.59848 -16.97896 -16.41514 -16.34001 -16.04283 -15.49601 -15.32874 -15.28409 -15.12383 -14.80342 -14.46336 -14.35797 -14.00620 -13.94060 -13.60191 -13.51129 -13.40908 -12.97476 -12.92200 -12.83196 -12.57761 -12.50778 -12.36472 -12.30551 -12.12364 -12.08932 -11.87361 -11.82033 -11.54111 -11.42901 -11.12718 -10.77660 -9.73187 -9.25896 -8.85845 -8.45173 -6.13306 0.64541 0.71168 1.09249 1.35758 1.45204 1.53540 1.60758 2.19086 2.77498 3.05500 3.25664 3.44455 3.52958 3.56225 3.80970 3.99554 4.05864 4.06695 4.08186 4.10991 4.24843 4.33526 4.34728 4.36121 4.41670 4.62335 4.68397 4.76106 4.81374 4.83190 4.92127 4.92972 4.97939 5.08378 5.11635 5.13192 5.15404 5.17793 5.34963 5.43496 5.60785 5.74663 5.82576 6.04751 6.07251 6.11602 6.28273 6.66596 6.99521 7.81668 8.78232 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.002162 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.606699 B =12949.075407 C =13679.850348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.476 3.524 5 O -0.536 6.536 6 C -0.099 4.099 7 H 0.141 0.859 8 C -0.107 4.107 9 C 0.044 3.956 10 N -0.539 5.539 11 C 0.110 3.890 12 C -0.152 4.152 13 C -0.051 4.051 14 C -0.208 4.208 15 C 0.113 3.887 16 O -0.235 6.235 17 C -0.411 4.411 18 H 0.103 0.897 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.252 1.252 25 C -0.242 4.242 26 C -0.058 4.058 27 C 0.055 3.945 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.272 0.728 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.075 0.925 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.655 -15.500 15.131 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.320 3.680 5 O -0.426 6.426 6 C -0.119 4.119 7 H 0.158 0.842 8 C -0.145 4.145 9 C -0.084 4.084 10 N -0.264 5.264 11 C -0.017 4.017 12 C -0.153 4.153 13 C -0.069 4.069 14 C -0.227 4.227 15 C 0.063 3.937 16 O -0.142 6.142 17 C -0.488 4.488 18 H 0.120 0.880 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.838 3.162 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.261 4.261 26 C -0.076 4.076 27 C -0.072 4.072 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.159 0.841 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.835 -15.970 14.468 29.288 hybrid contribution -0.052 0.839 -0.108 0.847 sum -19.887 -15.131 14.360 28.821 Atomic orbital electron populations 1.21821 0.90430 1.04330 1.03770 1.23289 0.97088 0.79265 1.02486 1.86515 1.23820 1.33622 1.83482 1.23720 0.80681 0.92539 0.71020 1.90661 1.61073 1.44125 1.46700 1.22340 0.96666 0.89848 1.03053 0.84170 1.22682 0.99923 0.97450 0.94434 1.23085 0.88193 0.96021 1.01068 1.63605 1.16209 1.11731 1.34812 1.21064 0.95742 0.92546 0.92371 1.19558 0.96556 0.96083 1.03087 1.20837 0.94827 0.97737 0.93524 1.20448 1.02919 0.94063 1.05290 1.19941 0.92821 0.90744 0.90230 1.83945 1.43909 1.31995 1.54368 1.21820 1.06239 0.99113 1.21583 0.88010 1.26613 0.97680 1.02852 0.95144 1.70193 1.20766 1.39332 1.25784 0.84579 0.78256 0.75410 0.77912 1.18790 1.19745 1.17515 1.21228 0.98029 1.02828 1.04021 1.20936 0.98717 0.92872 0.95075 1.22783 0.90851 0.96391 0.97184 0.91361 0.88358 0.91068 0.91672 0.91183 0.91417 0.87221 0.91441 0.91403 0.92189 0.89243 0.84146 0.87360 0.91928 0.86368 0.84218 0.90628 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 71.98 0.74 -0.36 16 2 C 0.05 0.69 6.19 71.98 0.45 1.14 16 3 O -0.36 -6.01 10.22 -51.43 -0.53 -6.53 16 4 C 0.48 9.19 7.27 71.23 0.52 9.71 16 5 O -0.54 -13.68 15.17 21.96 0.33 -13.35 16 6 C -0.10 -1.51 3.44 -10.36 -0.04 -1.54 16 7 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 8 C -0.11 -1.66 6.52 31.98 0.21 -1.45 16 9 C 0.04 0.86 5.61 86.77 0.49 1.34 16 10 N -0.54 -11.92 5.15 -890.08 -4.59 -16.50 16 11 C 0.11 2.40 4.72 85.56 0.40 2.81 16 12 C -0.15 -4.61 5.10 -19.83 -0.10 -4.71 16 13 C -0.05 -1.75 9.69 22.25 0.22 -1.53 16 14 C -0.21 -9.10 9.99 22.39 0.22 -8.88 16 15 C 0.11 5.69 6.65 22.58 0.15 5.84 16 16 O -0.24 -14.39 9.76 -22.77 -0.22 -14.61 16 17 C -0.41 -24.12 9.49 67.92 0.64 -23.48 16 18 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 19 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 20 N -0.92 -57.28 13.67 21.61 0.30 -56.99 16 21 Si 1.02 42.99 29.55 68.60 2.03 45.02 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 25 C -0.24 -10.40 9.17 22.39 0.21 -10.19 16 26 C -0.06 -1.89 8.91 22.25 0.20 -1.69 16 27 C 0.06 1.04 6.29 86.65 0.54 1.58 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.92 8.13 -2.39 -0.02 0.91 16 32 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 33 H 0.07 1.23 8.05 -2.39 -0.02 1.21 16 34 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.13 6.99 -2.39 -0.02 1.11 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.08 7.79 -2.39 -0.02 1.06 16 38 H 0.09 1.77 7.97 -2.39 -0.02 1.75 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 43 H 0.14 3.55 7.48 -2.91 -0.02 3.53 16 44 H 0.08 1.77 6.81 -2.39 -0.02 1.75 16 45 H 0.08 1.22 7.54 -2.39 -0.02 1.20 16 Total: -1.00 -75.36 372.68 3.62 -71.74 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.99 Total: 23.66 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 5.31 Total: -32.43 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -4.29 Total: -73.49 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.41 Total: -34.50 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.36 3.62 -71.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932646419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.023 kcal (2) G-P(sol) polarization free energy of solvation -75.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds