Wall clock time and date at job start Tue Mar 31 2020 13:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00145 * 2 1 4 4 C 1.50699 * 120.00159 * 180.02562 * 2 1 3 5 5 H 1.08995 * 109.47019 * 4.99618 * 4 2 1 6 6 C 1.53006 * 109.46905 * 245.00042 * 4 2 1 7 7 C 1.50701 * 109.47006 * 174.99566 * 6 4 2 8 8 O 1.21290 * 120.00038 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99858 * 179.97438 * 7 6 4 10 10 C 1.39997 * 119.99804 * 175.49333 * 9 7 6 11 11 C 1.38919 * 120.00049 * 214.84897 * 10 9 7 12 12 C 1.38003 * 119.99767 * 179.79162 * 11 10 9 13 13 C 1.38912 * 120.00240 * 0.46506 * 12 11 10 14 14 O 1.35772 * 120.00036 * 179.76671 * 13 12 11 15 15 C 1.34817 * 117.00136 * 185.36762 * 14 13 12 16 16 H 1.08003 * 119.99296 * 354.96090 * 15 14 13 17 17 C 1.38623 * 120.00076 * 174.96422 * 15 14 13 18 18 N 1.31569 * 120.00491 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99901 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46941 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46987 * 120.00000 * 19 17 15 22 22 H 1.48499 * 109.47246 * 239.99965 * 19 17 15 23 23 C 1.38909 * 119.99695 * 359.78989 * 13 12 11 24 24 C 1.37998 * 120.00831 * 359.97438 * 23 13 12 25 25 O 1.42897 * 109.47441 * 125.00159 * 4 2 1 26 26 C 1.42898 * 113.99967 * 270.00087 * 25 4 2 27 27 C 1.52999 * 109.47433 * 179.97438 * 26 25 4 28 28 H 1.08005 * 120.00002 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00323 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46925 * 269.99800 * 3 2 1 31 31 H 1.09005 * 109.46809 * 29.99652 * 3 2 1 32 32 H 1.08996 * 109.47743 * 149.99721 * 3 2 1 33 33 H 1.08997 * 109.46920 * 294.99846 * 6 4 2 34 34 H 1.08994 * 109.47237 * 55.00059 * 6 4 2 35 35 H 0.96995 * 120.00056 * 355.49828 * 9 7 6 36 36 H 1.08000 * 120.00109 * 0.02731 * 11 10 9 37 37 H 1.08000 * 120.00354 * 180.23558 * 12 11 10 38 38 H 0.96998 * 120.00932 * 180.02562 * 18 17 15 39 39 H 1.08003 * 119.99289 * 179.97438 * 23 13 12 40 40 H 1.07997 * 120.00194 * 179.97438 * 24 23 13 41 41 H 1.09000 * 109.47427 * 60.00083 * 26 25 4 42 42 H 1.09001 * 109.47113 * 299.99422 * 26 25 4 43 43 H 1.09000 * 109.46978 * 59.99190 * 27 26 25 44 44 H 1.09007 * 109.46843 * 300.00439 * 27 26 25 45 45 H 1.08996 * 109.47682 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1315 -0.0904 6 6 2.8464 -1.4425 1.3068 7 6 3.5008 -2.7989 1.3602 8 8 3.3557 -3.5788 0.4427 9 7 4.2481 -3.1450 2.4270 10 6 4.7780 -4.4374 2.5209 11 6 4.8909 -5.0535 3.7608 12 6 5.4092 -6.3292 3.8528 13 6 5.8270 -6.9935 2.7066 14 8 6.3413 -8.2467 2.7976 15 6 6.8299 -8.7916 1.6654 16 1 6.7275 -8.2680 0.7264 17 6 7.4636 -10.0238 1.7065 18 7 7.5878 -10.6620 2.8504 19 14 8.1399 -10.7791 0.1375 20 1 7.8734 -9.8687 -1.0049 21 1 9.6045 -10.9818 0.2771 22 1 7.4803 -12.0869 -0.1067 23 6 5.7190 -6.3754 1.4673 24 6 5.1962 -5.1016 1.3746 25 8 2.9709 -1.3307 -1.1042 26 6 2.4139 -1.8755 -2.3021 27 6 3.4679 -1.8529 -3.4109 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 2.2452 1.6197 -1.0277 31 1 1.4743 2.0648 0.5138 32 1 3.0158 1.1749 0.5138 33 1 3.6116 -0.6677 1.3551 34 1 2.1657 -1.3340 2.1511 35 1 4.4188 -2.4986 3.1298 36 1 4.5695 -4.5356 4.6524 37 1 5.4935 -6.8097 4.8163 38 1 8.0315 -11.5240 2.8793 39 1 6.0442 -6.8918 0.5762 40 1 5.1126 -4.6210 0.4111 41 1 1.5538 -1.2793 -2.6068 42 1 2.0982 -2.9031 -2.1214 43 1 4.3283 -2.4488 -3.1064 44 1 3.7833 -0.8252 -3.5914 45 1 3.0432 -2.2689 -4.3245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116379090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:49 Heat of formation + Delta-G solvation = -67.403712 kcal Electronic energy + Delta-G solvation = -26186.656912 eV Core-core repulsion = 22363.669775 eV Total energy + Delta-G solvation = -3822.987137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25367 -38.98668 -38.24187 -36.40311 -35.38837 -33.88834 -32.20652 -31.82323 -30.34384 -30.12319 -27.84195 -27.61844 -25.33536 -24.21570 -22.81454 -22.28660 -21.33718 -19.95372 -19.06985 -18.08639 -17.53312 -17.03996 -16.73004 -16.32410 -15.73135 -15.23892 -14.80880 -14.48202 -14.46916 -14.15551 -13.87397 -13.69575 -13.54619 -13.48312 -13.27930 -12.85594 -12.76468 -12.54012 -12.45454 -12.09944 -11.96186 -11.72748 -11.67592 -11.50148 -11.46169 -11.21773 -11.01437 -10.96020 -10.70331 -10.40097 -9.68947 -9.64252 -9.60193 -9.46208 -9.12155 -8.67234 -8.17241 -6.90283 -6.42316 -3.99809 1.80691 2.12381 2.25243 2.91363 3.15479 3.16951 3.22565 3.32721 3.61292 3.99884 4.40572 4.58791 4.62665 4.72285 4.91499 5.02469 5.11478 5.13059 5.17928 5.27750 5.28838 5.29075 5.37184 5.41225 5.51669 5.63619 5.69634 5.70642 5.70816 5.79518 5.89924 6.06045 6.17602 6.22159 6.23462 6.38487 6.42786 6.76634 6.89112 7.04752 7.13725 7.17115 7.34329 7.47302 7.74447 7.82917 8.03219 8.44684 9.03771 9.73554 10.75813 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002633 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.721346 B =10632.204768 C =11844.923981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C -0.112 4.112 4 C 0.143 3.857 5 H 0.074 0.926 6 C -0.135 4.135 7 C 0.508 3.492 8 O -0.518 6.518 9 N -0.664 5.664 10 C 0.035 3.965 11 C -0.094 4.094 12 C -0.179 4.179 13 C 0.146 3.854 14 O -0.178 6.178 15 C -0.389 4.389 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.221 4.221 24 C -0.064 4.064 25 O -0.366 6.366 26 C 0.063 3.937 27 C -0.149 4.149 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.401 0.599 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.269 0.731 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 22.474 -4.756 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.146 4.146 3 C -0.169 4.169 4 C 0.084 3.916 5 H 0.092 0.908 6 C -0.175 4.175 7 C 0.295 3.705 8 O -0.393 6.393 9 N -0.308 5.308 10 C -0.057 4.057 11 C -0.114 4.114 12 C -0.199 4.199 13 C 0.092 3.908 14 O -0.081 6.081 15 C -0.465 4.465 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.241 4.241 24 C -0.084 4.084 25 O -0.285 6.285 26 C -0.013 4.013 27 C -0.206 4.206 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.235 0.765 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.997 21.609 -5.157 24.788 hybrid contribution 0.085 -0.109 -0.401 0.424 sum -10.912 21.500 -5.558 24.743 Atomic orbital electron populations 1.23784 0.95081 1.02150 1.01281 1.22313 0.95510 0.96707 1.00120 1.20745 1.00096 0.93719 1.02302 1.20714 0.90896 0.93612 0.86377 0.90830 1.21786 1.01336 0.96008 0.98397 1.20489 0.78795 0.88911 0.82308 1.90699 1.60529 1.52312 1.35798 1.43224 1.51202 1.12674 1.23746 1.17272 1.07519 0.86479 0.94450 1.20357 1.01240 0.94513 0.95333 1.19988 1.07941 0.94863 0.97079 1.19412 0.92497 0.85864 0.93028 1.83971 1.66207 1.22388 1.35570 1.21382 1.36417 1.02980 0.85769 0.88996 1.25277 0.96658 0.95810 0.98809 1.70050 1.40344 1.14702 1.24793 0.85654 0.78648 0.79133 0.80059 1.19045 1.20158 1.20162 1.21115 1.08312 0.96559 0.98072 1.20871 0.95377 0.94534 0.97585 1.87902 1.38171 1.83276 1.19166 1.22416 0.96069 0.97652 0.85176 1.21712 0.99649 1.02480 0.96791 0.88358 0.88085 0.91367 0.92115 0.91597 0.87986 0.87678 0.76519 0.86796 0.86115 0.92115 0.85274 0.85634 0.94135 0.92803 0.91601 0.92302 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 13.91 29.02 0.40 -0.98 16 2 C -0.15 -1.23 5.04 -101.06 -0.51 -1.74 16 3 C -0.11 -0.81 9.84 36.01 0.35 -0.45 16 4 C 0.14 1.51 1.86 -27.88 -0.05 1.46 16 5 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 6 C -0.14 -1.30 5.22 -27.88 -0.15 -1.45 16 7 C 0.51 7.15 7.55 -10.99 -0.08 7.06 16 8 O -0.52 -9.38 12.86 -8.88 -0.11 -9.49 16 9 N -0.66 -9.05 5.34 -9.82 -0.05 -9.10 16 10 C 0.04 0.63 6.30 -83.62 -0.53 0.10 16 11 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 12 C -0.18 -3.77 9.99 -39.42 -0.39 -4.16 16 13 C 0.15 3.60 6.65 -39.08 -0.26 3.34 16 14 O -0.18 -5.14 9.75 0.02 0.00 -5.14 16 15 C -0.39 -11.07 9.48 30.87 0.29 -10.78 16 16 H 0.09 2.45 5.20 -52.48 -0.27 2.18 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 19 Si 0.94 20.92 29.55 -169.99 -5.02 15.89 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.22 -5.08 9.16 -39.42 -0.36 -5.45 16 24 C -0.06 -1.31 8.69 -39.42 -0.34 -1.66 16 25 O -0.37 -4.59 9.07 -49.66 -0.45 -5.05 16 26 C 0.06 0.72 6.46 37.16 0.24 0.96 16 27 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 28 H 0.10 0.71 7.84 -52.48 -0.41 0.30 16 29 H 0.10 0.62 8.04 -52.49 -0.42 0.19 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.35 8.06 -51.93 -0.42 -0.06 16 32 H 0.07 0.46 7.02 -51.93 -0.36 0.10 16 33 H 0.10 0.83 7.19 -51.93 -0.37 0.45 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 3.88 8.82 -40.82 -0.36 3.52 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.13 3.01 5.63 -52.48 -0.30 2.71 16 40 H 0.13 2.59 6.22 -52.49 -0.33 2.27 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -33.74 380.08 -7.20 -40.95 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.56 Total: 6.97 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -1.49 Total: -15.96 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.71 Total: -33.90 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.56 Total: -19.68 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.74 -7.20 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116379090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.457 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds