Wall clock time and date at job start Tue Mar 31 2020 13:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00145 * 2 1 4 4 C 1.50699 * 120.00159 * 180.02562 * 2 1 3 5 5 H 1.08995 * 109.47019 * 4.99618 * 4 2 1 6 6 C 1.53006 * 109.46905 * 245.00042 * 4 2 1 7 7 C 1.50701 * 109.47006 * 174.99566 * 6 4 2 8 8 O 1.21290 * 120.00038 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99858 * 179.97438 * 7 6 4 10 10 C 1.39997 * 119.99804 * 175.49333 * 9 7 6 11 11 C 1.38919 * 120.00049 * 214.84897 * 10 9 7 12 12 C 1.38003 * 119.99767 * 179.79162 * 11 10 9 13 13 C 1.38912 * 120.00240 * 0.46506 * 12 11 10 14 14 O 1.35772 * 120.00036 * 179.76671 * 13 12 11 15 15 C 1.34817 * 117.00136 * 185.36762 * 14 13 12 16 16 H 1.08003 * 119.99296 * 354.96090 * 15 14 13 17 17 C 1.38623 * 120.00076 * 174.96422 * 15 14 13 18 18 N 1.31569 * 120.00491 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99901 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46941 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46987 * 120.00000 * 19 17 15 22 22 H 1.48499 * 109.47246 * 239.99965 * 19 17 15 23 23 C 1.38909 * 119.99695 * 359.78989 * 13 12 11 24 24 C 1.37998 * 120.00831 * 359.97438 * 23 13 12 25 25 O 1.42897 * 109.47441 * 125.00159 * 4 2 1 26 26 C 1.42898 * 113.99967 * 270.00087 * 25 4 2 27 27 C 1.52999 * 109.47433 * 179.97438 * 26 25 4 28 28 H 1.08005 * 120.00002 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00323 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46925 * 269.99800 * 3 2 1 31 31 H 1.09005 * 109.46809 * 29.99652 * 3 2 1 32 32 H 1.08996 * 109.47743 * 149.99721 * 3 2 1 33 33 H 1.08997 * 109.46920 * 294.99846 * 6 4 2 34 34 H 1.08994 * 109.47237 * 55.00059 * 6 4 2 35 35 H 0.96995 * 120.00056 * 355.49828 * 9 7 6 36 36 H 1.08000 * 120.00109 * 0.02731 * 11 10 9 37 37 H 1.08000 * 120.00354 * 180.23558 * 12 11 10 38 38 H 0.96998 * 120.00932 * 180.02562 * 18 17 15 39 39 H 1.08003 * 119.99289 * 179.97438 * 23 13 12 40 40 H 1.07997 * 120.00194 * 179.97438 * 24 23 13 41 41 H 1.09000 * 109.47427 * 60.00083 * 26 25 4 42 42 H 1.09001 * 109.47113 * 299.99422 * 26 25 4 43 43 H 1.09000 * 109.46978 * 59.99190 * 27 26 25 44 44 H 1.09007 * 109.46843 * 300.00439 * 27 26 25 45 45 H 1.08996 * 109.47682 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1315 -0.0904 6 6 2.8464 -1.4425 1.3068 7 6 3.5008 -2.7989 1.3602 8 8 3.3557 -3.5788 0.4427 9 7 4.2481 -3.1450 2.4270 10 6 4.7780 -4.4374 2.5209 11 6 4.8909 -5.0535 3.7608 12 6 5.4092 -6.3292 3.8528 13 6 5.8270 -6.9935 2.7066 14 8 6.3413 -8.2467 2.7976 15 6 6.8299 -8.7916 1.6654 16 1 6.7275 -8.2680 0.7264 17 6 7.4636 -10.0238 1.7065 18 7 7.5878 -10.6620 2.8504 19 14 8.1399 -10.7791 0.1375 20 1 7.8734 -9.8687 -1.0049 21 1 9.6045 -10.9818 0.2771 22 1 7.4803 -12.0869 -0.1067 23 6 5.7190 -6.3754 1.4673 24 6 5.1962 -5.1016 1.3746 25 8 2.9709 -1.3307 -1.1042 26 6 2.4139 -1.8755 -2.3021 27 6 3.4679 -1.8529 -3.4109 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 2.2452 1.6197 -1.0277 31 1 1.4743 2.0648 0.5138 32 1 3.0158 1.1749 0.5138 33 1 3.6116 -0.6677 1.3551 34 1 2.1657 -1.3340 2.1511 35 1 4.4188 -2.4986 3.1298 36 1 4.5695 -4.5356 4.6524 37 1 5.4935 -6.8097 4.8163 38 1 8.0315 -11.5240 2.8793 39 1 6.0442 -6.8918 0.5762 40 1 5.1126 -4.6210 0.4111 41 1 1.5538 -1.2793 -2.6068 42 1 2.0982 -2.9031 -2.1214 43 1 4.3283 -2.4488 -3.1064 44 1 3.7833 -0.8252 -3.5914 45 1 3.0432 -2.2689 -4.3245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116379090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:49 Heat of formation + Delta-G solvation = -88.776583 kcal Electronic energy + Delta-G solvation = -26187.583709 eV Core-core repulsion = 22363.669775 eV Total energy + Delta-G solvation = -3823.913935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53745 -40.48458 -39.41506 -38.03243 -36.09995 -35.34117 -34.18175 -32.69311 -31.86182 -31.25017 -29.32290 -28.20223 -27.30527 -25.24834 -23.91219 -23.67282 -22.88138 -21.22966 -19.94574 -19.77238 -19.16266 -18.09900 -17.92788 -17.73247 -16.64064 -16.45103 -16.28007 -15.99517 -15.65281 -15.50003 -15.30652 -15.08578 -14.73742 -14.64196 -14.40591 -14.14250 -13.89544 -13.69589 -13.53313 -13.26823 -13.19824 -13.15007 -12.80326 -12.69281 -12.60529 -12.43744 -12.42432 -12.12625 -11.97870 -11.78541 -11.40999 -11.10836 -10.76873 -10.49586 -10.46584 -10.08063 -9.83698 -8.60374 -8.48003 -6.14719 0.51342 0.56644 1.20387 1.33808 1.40661 1.51801 1.72620 2.16067 2.19454 2.79067 2.81666 3.14382 3.51088 3.61159 3.90224 3.93223 4.06767 4.12487 4.15604 4.22591 4.34021 4.42952 4.48174 4.48638 4.55824 4.67462 4.75900 4.77761 4.80859 4.87347 4.95524 5.01758 5.06775 5.07750 5.14041 5.20666 5.22976 5.35851 5.46275 5.61262 5.65569 5.70174 5.82827 6.01624 6.18196 6.33867 6.60192 6.96788 7.31535 7.76353 8.74985 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002633 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.721346 B =10632.204768 C =11844.923981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.154 4.154 3 C -0.110 4.110 4 C 0.137 3.863 5 H 0.055 0.945 6 C -0.124 4.124 7 C 0.505 3.495 8 O -0.561 6.561 9 N -0.652 5.652 10 C 0.064 3.936 11 C -0.078 4.078 12 C -0.180 4.180 13 C 0.105 3.895 14 O -0.228 6.228 15 C -0.413 4.413 16 H 0.095 0.905 17 C -0.020 4.020 18 N -0.918 5.918 19 Si 1.016 2.984 20 H -0.257 1.257 21 H -0.265 1.265 22 H -0.267 1.267 23 C -0.230 4.230 24 C -0.077 4.077 25 O -0.385 6.385 26 C 0.063 3.937 27 C -0.146 4.146 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.426 0.574 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.273 0.727 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.044 0.956 44 H 0.068 0.932 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.540 26.070 -4.534 29.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.078 3.922 5 H 0.074 0.926 6 C -0.163 4.163 7 C 0.294 3.706 8 O -0.439 6.439 9 N -0.299 5.299 10 C -0.030 4.030 11 C -0.097 4.097 12 C -0.200 4.200 13 C 0.055 3.945 14 O -0.134 6.134 15 C -0.489 4.489 16 H 0.113 0.887 17 C -0.218 4.218 18 N -0.556 5.556 19 Si 0.836 3.164 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.191 1.191 23 C -0.250 4.250 24 C -0.097 4.097 25 O -0.304 6.304 26 C -0.014 4.014 27 C -0.203 4.203 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.265 0.735 36 H 0.186 0.814 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.383 25.300 -4.909 28.593 hybrid contribution 0.286 -0.882 -0.428 1.021 sum -12.098 24.418 -5.337 27.769 Atomic orbital electron populations 1.23953 0.94862 1.02916 0.99672 1.22201 0.95679 0.96047 1.01559 1.20750 1.00321 0.93337 1.02235 1.20840 0.90690 0.94383 0.86261 0.92642 1.21858 1.02178 0.93142 0.99152 1.21386 0.77971 0.90105 0.81157 1.90706 1.61820 1.53994 1.37395 1.43193 1.50650 1.11340 1.24744 1.17423 1.04112 0.87873 0.93602 1.20800 0.98959 0.92940 0.97042 1.20341 1.07246 0.96089 0.96334 1.19937 0.94119 0.85607 0.94857 1.83932 1.68861 1.24656 1.35991 1.21784 1.37148 1.03763 0.86199 0.88725 1.26517 0.96668 0.95908 1.02714 1.70175 1.42433 1.15579 1.27417 0.84569 0.78187 0.78243 0.75449 1.18056 1.18989 1.19143 1.21087 1.09041 0.97626 0.97233 1.20917 0.96057 0.93909 0.98808 1.87868 1.39355 1.83323 1.19887 1.22438 0.96908 0.96700 0.85326 1.21714 0.98676 1.02784 0.97138 0.88592 0.86345 0.91956 0.90481 0.91402 0.85656 0.84248 0.73494 0.81427 0.85329 0.91759 0.86876 0.85921 0.92552 0.94943 0.93698 0.91331 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 13.91 67.79 0.94 -1.17 16 2 C -0.15 -2.16 5.04 -16.48 -0.08 -2.24 16 3 C -0.11 -1.22 9.84 71.24 0.70 -0.52 16 4 C 0.14 2.62 1.86 29.85 0.06 2.67 16 5 H 0.06 1.24 7.25 -2.39 -0.02 1.23 16 6 C -0.12 -1.93 5.22 29.85 0.16 -1.78 16 7 C 0.50 12.88 7.55 87.66 0.66 13.54 16 8 O -0.56 -19.96 12.86 10.73 0.14 -19.82 16 9 N -0.65 -15.32 5.34 -303.37 -1.62 -16.94 16 10 C 0.06 2.13 6.30 38.16 0.24 2.37 16 11 C -0.08 -2.49 9.96 22.38 0.22 -2.27 16 12 C -0.18 -7.53 9.99 22.38 0.22 -7.30 16 13 C 0.11 5.41 6.65 22.59 0.15 5.56 16 14 O -0.23 -13.99 9.75 -22.84 -0.22 -14.21 16 15 C -0.41 -24.89 9.48 67.91 0.64 -24.24 16 16 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 17 C -0.02 -1.19 5.49 84.82 0.47 -0.72 16 18 N -0.92 -56.98 13.67 21.61 0.30 -56.68 16 19 Si 1.02 44.36 29.55 68.60 2.03 46.38 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 C -0.23 -11.07 9.16 22.37 0.20 -10.86 16 24 C -0.08 -3.17 8.69 22.38 0.19 -2.98 16 25 O -0.38 -9.23 9.07 -135.19 -1.23 -10.46 16 26 C 0.06 1.39 6.46 71.98 0.46 1.86 16 27 C -0.15 -2.89 10.28 71.98 0.74 -2.15 16 28 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 29 H 0.12 1.01 8.04 -2.91 -0.02 0.99 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.60 8.06 -2.38 -0.02 0.58 16 32 H 0.07 0.71 7.02 -2.39 -0.02 0.70 16 33 H 0.13 1.46 7.19 -2.39 -0.02 1.44 16 34 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.43 5.96 8.82 -92.71 -0.82 5.14 16 36 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.11 5.67 5.63 -2.91 -0.02 5.65 16 40 H 0.12 5.16 6.22 -2.91 -0.02 5.14 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.03 0.84 8.09 -2.39 -0.02 0.82 16 43 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -79.92 380.08 5.56 -74.36 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.18 Total: 27.61 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 5.99 Total: -30.23 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.32 Total: -73.63 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.31 Total: -44.49 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -79.92 5.56 -74.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116379090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.418 kcal (2) G-P(sol) polarization free energy of solvation -79.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds