Wall clock time and date at job start Tue Mar 31 2020 13:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47294 * 2 1 4 4 C 1.34755 * 117.00043 * 180.02562 * 3 2 1 5 5 O 1.21505 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.47410 * 119.99968 * 180.02562 * 4 3 2 7 7 C 1.39577 * 120.01086 * 359.97438 * 6 4 3 8 8 C 1.38387 * 120.09293 * 180.02562 * 7 6 4 9 9 N 1.39967 * 120.08467 * 179.79452 * 8 7 6 10 10 C 1.46498 * 119.99860 * 0.02562 * 9 8 7 11 11 C 1.53005 * 109.46916 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47019 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46729 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00038 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99743 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00454 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00070 * 0.02562 * 15 13 12 18 18 H 1.48510 * 109.47109 * 89.99823 * 17 15 13 19 19 H 1.48503 * 109.47450 * 209.99757 * 17 15 13 20 20 H 1.48499 * 109.47231 * 330.00064 * 17 15 13 21 21 C 1.39215 * 119.82728 * 359.81523 * 8 7 6 22 22 C 1.37632 * 120.27888 * 359.97438 * 21 8 7 23 23 C 1.38867 * 120.95389 * 0.35539 * 22 21 8 24 24 O 1.36216 * 111.37237 * 179.11608 * 23 22 21 25 25 C 1.43773 * 109.12231 * 18.73658 * 24 23 22 26 26 C 1.51693 * 132.04282 * 180.38543 * 22 21 8 27 27 H 1.09004 * 109.47056 * 299.99897 * 1 2 3 28 28 H 1.08996 * 109.47305 * 60.00205 * 1 2 3 29 29 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47375 * 239.99738 * 2 1 3 31 31 H 1.09008 * 109.47481 * 120.00437 * 2 1 3 32 32 H 1.07997 * 119.95173 * 0.03042 * 7 6 4 33 33 H 0.96996 * 119.99642 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47065 * 299.99560 * 10 9 8 35 35 H 1.08998 * 109.47503 * 60.00267 * 10 9 8 36 36 H 1.08994 * 109.46978 * 300.00190 * 11 10 9 37 37 H 1.09005 * 109.46877 * 60.00239 * 11 10 9 38 38 H 1.08998 * 109.47235 * 300.00218 * 12 11 10 39 39 H 1.08994 * 109.46820 * 60.00097 * 12 11 10 40 40 H 0.96999 * 120.00673 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.86199 * 179.97438 * 21 8 7 42 42 H 1.09002 * 110.75282 * 214.09017 * 25 24 23 43 43 H 1.09002 * 110.74899 * 90.91578 * 25 24 23 44 44 H 1.08997 * 110.94743 * 46.42510 * 26 22 21 45 45 H 1.09003 * 110.96924 * 282.74114 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0901 0.5819 -0.0005 6 6 3.9134 2.9076 0.0000 7 6 3.0634 4.0147 0.0005 8 6 3.5905 5.2942 0.0005 9 7 2.7379 6.4043 -0.0033 10 6 1.2856 6.2124 -0.0067 11 6 0.5911 7.5757 -0.0099 12 6 -0.9258 7.3753 -0.0141 13 6 -1.6098 8.7182 -0.0165 14 1 -1.0215 9.6239 -0.0157 15 6 -2.9866 8.7905 -0.0210 16 7 -3.5837 9.9622 -0.0226 17 14 -4.0041 7.2239 -0.0232 18 1 -4.2782 6.8096 1.3763 19 1 -5.2884 7.4687 -0.7275 20 1 -3.2547 6.1479 -0.7202 21 6 4.9709 5.4744 0.0038 22 6 5.8129 4.3857 0.0077 23 6 5.3078 3.0922 0.0010 24 8 6.3088 2.1685 -0.0132 25 6 7.5303 2.7910 0.4197 26 6 7.3254 4.2713 0.0194 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.9928 3.8725 0.0010 33 1 3.1088 7.3006 -0.0037 34 1 0.9949 5.6541 -0.8967 35 1 0.9904 5.6568 0.8833 36 1 0.8818 8.1336 0.8802 37 1 0.8862 8.1318 -0.8998 38 1 -1.2161 6.8176 -0.9044 39 1 -1.2212 6.8191 0.8755 40 1 -4.5523 10.0131 -0.0261 41 1 5.3829 6.4727 0.0034 42 1 8.3871 2.3648 -0.1022 43 1 7.6509 2.6959 1.4989 44 1 7.7610 4.9396 0.7621 45 1 7.7392 4.4682 -0.9696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:07 Heat of formation + Delta-G solvation = -100.841984 kcal Electronic energy + Delta-G solvation = -26093.073624 eV Core-core repulsion = 22268.636494 eV Total energy + Delta-G solvation = -3824.437130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36446 -40.12249 -38.41997 -36.59088 -35.64858 -33.48064 -33.04645 -31.86429 -31.59637 -29.76306 -28.77480 -26.48368 -25.09000 -23.66980 -22.95244 -22.65733 -21.00180 -20.92890 -20.26822 -17.92823 -17.56799 -17.11488 -16.86252 -16.68218 -16.48437 -16.14258 -15.55194 -14.99558 -14.75652 -14.27354 -14.09601 -14.08543 -13.48579 -13.35461 -13.24734 -13.00088 -12.91795 -12.79905 -12.53361 -12.28779 -12.04477 -12.01436 -11.89160 -11.72814 -11.46994 -11.29869 -11.05419 -10.86083 -10.63458 -10.45014 -10.10140 -9.91243 -9.74110 -9.48879 -9.26360 -9.07544 -8.58780 -7.18868 -6.09160 -4.08137 0.58541 1.31271 2.52698 2.54787 3.09077 3.27937 3.35780 3.38641 3.49157 3.63723 4.14537 4.34990 4.41035 4.55989 4.71759 4.76916 4.78917 4.82834 5.03936 5.09227 5.14400 5.24582 5.24733 5.37514 5.40029 5.45855 5.51549 5.57664 5.61580 5.63245 5.76967 5.83145 5.93484 6.02771 6.11171 6.25961 6.35442 6.39677 6.44030 6.73488 6.93382 7.18285 7.32285 7.32991 7.72793 7.73896 7.79766 8.47407 8.94834 9.52813 11.04175 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.003066 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.849083 B = 9129.442730 C =11368.999791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.353 6.353 4 C 0.509 3.491 5 O -0.498 6.498 6 C -0.098 4.098 7 C -0.116 4.116 8 C 0.190 3.810 9 N -0.741 5.741 10 C 0.117 3.883 11 C -0.112 4.112 12 C -0.010 4.010 13 C -0.523 4.523 14 H 0.071 0.929 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C -0.112 4.112 22 C -0.139 4.139 23 C 0.106 3.894 24 O -0.284 6.284 25 C 0.047 3.953 26 C -0.108 4.108 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.401 0.599 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.264 0.736 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.769 -16.284 0.629 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.270 6.270 4 C 0.354 3.646 5 O -0.386 6.386 6 C -0.101 4.101 7 C -0.140 4.140 8 C 0.086 3.914 9 N -0.370 5.370 10 C -0.006 4.006 11 C -0.150 4.150 12 C -0.048 4.048 13 C -0.561 4.561 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.135 4.135 22 C -0.141 4.141 23 C 0.058 3.942 24 O -0.198 6.198 25 C -0.028 4.028 26 C -0.145 4.145 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.564 -16.809 0.569 25.799 hybrid contribution -0.443 -0.317 0.051 0.547 sum 19.121 -17.125 0.620 25.676 Atomic orbital electron populations 1.21822 0.92433 1.02929 1.03940 1.23016 0.95428 0.80028 1.02475 1.86582 1.23767 1.32319 1.84374 1.20994 0.80610 0.89756 0.73209 1.90862 1.60243 1.42152 1.45373 1.18010 0.89053 0.90507 1.12504 1.20706 1.00200 0.89278 1.03802 1.17529 0.89419 0.88023 0.96426 1.44889 1.05162 1.05364 1.81619 1.21668 0.78148 1.00023 1.00805 1.21659 0.97894 0.93664 1.01778 1.19499 0.90669 0.98102 0.96563 1.21098 0.91745 0.92110 1.51128 0.91050 1.25035 0.97982 0.96007 0.94467 1.69908 1.09624 1.23707 1.50941 0.86775 0.79713 0.84231 0.78563 1.20239 1.21376 1.18879 1.19930 0.90706 0.98356 1.04506 1.20371 0.95359 0.92450 1.05876 1.19130 0.88181 0.87856 0.99019 1.87041 1.16495 1.34296 1.81920 1.23841 0.86887 0.91486 1.00595 1.21810 0.91679 0.97333 1.03658 0.91256 0.91243 0.90269 0.91285 0.91296 0.83554 0.76411 0.92378 0.92401 0.92143 0.92120 0.96342 0.96787 0.92670 0.85187 0.87683 0.90607 0.88834 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.68 6.20 37.16 0.23 0.91 16 3 O -0.35 -4.72 9.45 -40.64 -0.38 -5.11 16 4 C 0.51 7.63 7.89 34.46 0.27 7.90 16 5 O -0.50 -8.45 15.64 -24.95 -0.39 -8.84 16 6 C -0.10 -1.39 5.89 -104.75 -0.62 -2.01 16 7 C -0.12 -1.55 8.86 -39.03 -0.35 -1.89 16 8 C 0.19 2.36 6.66 -83.72 -0.56 1.81 16 9 N -0.74 -9.25 5.74 -58.61 -0.34 -9.58 16 10 C 0.12 1.71 4.92 -4.04 -0.02 1.69 16 11 C -0.11 -1.99 5.27 -26.73 -0.14 -2.13 16 12 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 13 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 17 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 21 C -0.11 -1.21 9.88 -39.44 -0.39 -1.59 16 22 C -0.14 -1.53 6.26 -104.12 -0.65 -2.18 16 23 C 0.11 1.43 6.73 -38.44 -0.26 1.17 16 24 O -0.28 -3.81 10.13 -36.29 -0.37 -4.18 16 25 C 0.05 0.39 8.00 38.05 0.30 0.69 16 26 C -0.11 -0.81 7.12 -26.50 -0.19 -1.00 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.15 1.93 6.25 -52.49 -0.33 1.60 16 33 H 0.40 4.40 8.49 -40.82 -0.35 4.06 16 34 H 0.06 0.85 7.95 -51.93 -0.41 0.44 16 35 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 39 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -33.44 375.58 -9.16 -42.60 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.93 Total: 0.45 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -2.52 Total: -10.87 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.44 Total: -36.27 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.14 Total: -18.12 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.44 -9.16 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.241 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds