Wall clock time and date at job start Tue Mar 31 2020 13:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47294 * 2 1 4 4 C 1.34755 * 117.00043 * 180.02562 * 3 2 1 5 5 O 1.21505 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.47410 * 119.99968 * 180.02562 * 4 3 2 7 7 C 1.39577 * 120.01086 * 359.97438 * 6 4 3 8 8 C 1.38387 * 120.09293 * 180.02562 * 7 6 4 9 9 N 1.39967 * 120.08467 * 179.79452 * 8 7 6 10 10 C 1.46498 * 119.99860 * 0.02562 * 9 8 7 11 11 C 1.53005 * 109.46916 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47019 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46729 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00038 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99743 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00454 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00070 * 0.02562 * 15 13 12 18 18 H 1.48510 * 109.47109 * 89.99823 * 17 15 13 19 19 H 1.48503 * 109.47450 * 209.99757 * 17 15 13 20 20 H 1.48499 * 109.47231 * 330.00064 * 17 15 13 21 21 C 1.39215 * 119.82728 * 359.81523 * 8 7 6 22 22 C 1.37632 * 120.27888 * 359.97438 * 21 8 7 23 23 C 1.38867 * 120.95389 * 0.35539 * 22 21 8 24 24 O 1.36216 * 111.37237 * 179.11608 * 23 22 21 25 25 C 1.43773 * 109.12231 * 18.73658 * 24 23 22 26 26 C 1.51693 * 132.04282 * 180.38543 * 22 21 8 27 27 H 1.09004 * 109.47056 * 299.99897 * 1 2 3 28 28 H 1.08996 * 109.47305 * 60.00205 * 1 2 3 29 29 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47375 * 239.99738 * 2 1 3 31 31 H 1.09008 * 109.47481 * 120.00437 * 2 1 3 32 32 H 1.07997 * 119.95173 * 0.03042 * 7 6 4 33 33 H 0.96996 * 119.99642 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47065 * 299.99560 * 10 9 8 35 35 H 1.08998 * 109.47503 * 60.00267 * 10 9 8 36 36 H 1.08994 * 109.46978 * 300.00190 * 11 10 9 37 37 H 1.09005 * 109.46877 * 60.00239 * 11 10 9 38 38 H 1.08998 * 109.47235 * 300.00218 * 12 11 10 39 39 H 1.08994 * 109.46820 * 60.00097 * 12 11 10 40 40 H 0.96999 * 120.00673 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.86199 * 179.97438 * 21 8 7 42 42 H 1.09002 * 110.75282 * 214.09017 * 25 24 23 43 43 H 1.09002 * 110.74899 * 90.91578 * 25 24 23 44 44 H 1.08997 * 110.94743 * 46.42510 * 26 22 21 45 45 H 1.09003 * 110.96924 * 282.74114 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0901 0.5819 -0.0005 6 6 3.9134 2.9076 0.0000 7 6 3.0634 4.0147 0.0005 8 6 3.5905 5.2942 0.0005 9 7 2.7379 6.4043 -0.0033 10 6 1.2856 6.2124 -0.0067 11 6 0.5911 7.5757 -0.0099 12 6 -0.9258 7.3753 -0.0141 13 6 -1.6098 8.7182 -0.0165 14 1 -1.0215 9.6239 -0.0157 15 6 -2.9866 8.7905 -0.0210 16 7 -3.5837 9.9622 -0.0226 17 14 -4.0041 7.2239 -0.0232 18 1 -4.2782 6.8096 1.3763 19 1 -5.2884 7.4687 -0.7275 20 1 -3.2547 6.1479 -0.7202 21 6 4.9709 5.4744 0.0038 22 6 5.8129 4.3857 0.0077 23 6 5.3078 3.0922 0.0010 24 8 6.3088 2.1685 -0.0132 25 6 7.5303 2.7910 0.4197 26 6 7.3254 4.2713 0.0194 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.9928 3.8725 0.0010 33 1 3.1088 7.3006 -0.0037 34 1 0.9949 5.6541 -0.8967 35 1 0.9904 5.6568 0.8833 36 1 0.8818 8.1336 0.8802 37 1 0.8862 8.1318 -0.8998 38 1 -1.2161 6.8176 -0.9044 39 1 -1.2212 6.8191 0.8755 40 1 -4.5523 10.0131 -0.0261 41 1 5.3829 6.4727 0.0034 42 1 8.3871 2.3648 -0.1022 43 1 7.6509 2.6959 1.4989 44 1 7.7610 4.9396 0.7621 45 1 7.7392 4.4682 -0.9696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:06 Heat of formation + Delta-G solvation = -120.642656 kcal Electronic energy + Delta-G solvation = -26093.932245 eV Core-core repulsion = 22268.636494 eV Total energy + Delta-G solvation = -3825.295751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25568 -41.13973 -39.38040 -37.65388 -36.90033 -35.17764 -33.88455 -33.43333 -32.51544 -30.72039 -29.87066 -27.94862 -26.05530 -24.67409 -24.20222 -23.45164 -22.15293 -21.97507 -21.65232 -19.04975 -18.80285 -18.45301 -18.00261 -17.66566 -17.52808 -16.94983 -16.58971 -16.30318 -16.26537 -15.53799 -15.18889 -14.98622 -14.75282 -14.41372 -14.34390 -14.15052 -13.84898 -13.71990 -13.59172 -13.51111 -13.38789 -12.93745 -12.77189 -12.74769 -12.55398 -12.50516 -12.29800 -12.08109 -11.78493 -11.64749 -11.55733 -11.51993 -11.48144 -11.29180 -10.74466 -10.49076 -9.92079 -8.27701 -8.14921 -6.31917 -0.38276 0.39590 1.39046 1.40749 1.47954 1.52466 1.60229 2.26753 2.38362 2.51386 2.70510 3.08399 3.41423 3.57322 3.77038 3.97040 3.98376 4.04822 4.13899 4.18716 4.22750 4.27505 4.30507 4.38278 4.48591 4.59636 4.67149 4.81292 4.83355 4.90361 4.90957 4.95802 4.96269 4.97129 5.07541 5.10554 5.17921 5.25389 5.38007 5.39704 5.51265 5.60779 5.67434 6.06642 6.27379 6.34676 6.66800 6.76930 6.88091 7.33081 8.89017 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.003066 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.849083 B = 9129.442730 C =11368.999791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.508 3.492 5 O -0.528 6.528 6 C -0.124 4.124 7 C -0.125 4.125 8 C 0.183 3.817 9 N -0.737 5.737 10 C 0.131 3.869 11 C -0.101 4.101 12 C -0.011 4.011 13 C -0.532 4.532 14 H 0.033 0.967 15 C 0.002 3.998 16 N -0.954 5.954 17 Si 0.949 3.051 18 H -0.267 1.267 19 H -0.287 1.287 20 H -0.242 1.242 21 C -0.101 4.101 22 C -0.137 4.137 23 C 0.091 3.909 24 O -0.315 6.315 25 C 0.037 3.963 26 C -0.100 4.100 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.410 0.590 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.022 0.978 40 H 0.265 0.735 41 H 0.160 0.840 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.224 -17.440 0.712 27.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.275 6.275 4 C 0.354 3.646 5 O -0.419 6.419 6 C -0.126 4.126 7 C -0.149 4.149 8 C 0.079 3.921 9 N -0.369 5.369 10 C 0.007 3.993 11 C -0.139 4.139 12 C -0.049 4.049 13 C -0.570 4.570 14 H 0.051 0.949 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.165 1.165 21 C -0.123 4.123 22 C -0.139 4.139 23 C 0.043 3.957 24 O -0.229 6.229 25 C -0.037 4.037 26 C -0.136 4.136 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.246 0.754 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.178 0.822 42 H 0.147 0.853 43 H 0.103 0.897 44 H 0.139 0.861 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 21.050 -17.964 0.655 27.681 hybrid contribution -0.784 0.095 0.033 0.791 sum 20.266 -17.869 0.687 27.027 Atomic orbital electron populations 1.21841 0.90470 1.04484 1.03670 1.23301 0.96936 0.78901 1.02651 1.86586 1.23037 1.33966 1.83959 1.21276 0.80872 0.89987 0.72429 1.90826 1.60889 1.43066 1.47160 1.18162 0.89915 0.90260 1.14265 1.20652 0.99954 0.89624 1.04671 1.17606 0.90184 0.87416 0.96902 1.44649 1.04199 1.05911 1.82092 1.21342 0.79275 0.97636 1.01084 1.21436 0.95221 0.95628 1.01606 1.19459 0.93369 0.95091 0.96944 1.21509 0.91982 0.93331 1.50173 0.94878 1.26038 0.99551 0.99681 0.94195 1.70069 1.10079 1.26460 1.52839 0.85668 0.77778 0.80075 0.79220 1.19187 1.21336 1.16505 1.20222 0.89859 0.99728 1.02465 1.20799 0.97421 0.91281 1.04349 1.19466 0.88155 0.89120 0.98957 1.87004 1.17983 1.35751 1.82159 1.24208 0.85743 0.92104 1.01618 1.21922 0.89115 0.97137 1.05446 0.91446 0.91487 0.87799 0.91188 0.91128 0.84011 0.75409 0.92251 0.92151 0.92344 0.92393 0.95838 0.95952 0.92571 0.82227 0.85303 0.89693 0.86093 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.29 71.98 0.74 -1.54 16 2 C 0.06 1.16 6.20 71.98 0.45 1.60 16 3 O -0.36 -9.72 9.45 -56.66 -0.54 -10.25 16 4 C 0.51 15.60 7.89 70.24 0.55 16.15 16 5 O -0.53 -18.50 15.64 25.25 0.39 -18.10 16 6 C -0.12 -3.51 5.89 -19.95 -0.12 -3.63 16 7 C -0.13 -3.26 8.86 22.63 0.20 -3.06 16 8 C 0.18 4.20 6.66 38.11 0.25 4.45 16 9 N -0.74 -16.88 5.74 -339.34 -1.95 -18.83 16 10 C 0.13 3.59 4.92 86.38 0.42 4.01 16 11 C -0.10 -3.48 5.27 30.60 0.16 -3.31 16 12 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 13 C -0.53 -29.80 9.66 25.60 0.25 -29.55 16 14 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 15 C 0.00 0.11 5.47 84.65 0.46 0.57 16 16 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 17 Si 0.95 43.25 27.47 68.60 1.88 45.13 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.24 -10.06 6.54 99.48 0.65 -9.40 16 21 C -0.10 -1.87 9.88 22.36 0.22 -1.65 16 22 C -0.14 -2.67 6.26 -19.54 -0.12 -2.79 16 23 C 0.09 2.38 6.73 23.01 0.15 2.54 16 24 O -0.32 -8.23 10.13 -80.86 -0.82 -9.04 16 25 C 0.04 0.53 8.00 72.56 0.58 1.11 16 26 C -0.10 -1.14 7.12 30.75 0.22 -0.92 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.14 3.69 6.25 -2.91 -0.02 3.67 16 33 H 0.41 8.00 8.49 -92.71 -0.79 7.21 16 34 H 0.06 1.63 7.95 -2.38 -0.02 1.61 16 35 H 0.06 1.64 7.95 -2.39 -0.02 1.62 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 39 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.73 375.58 3.98 -70.75 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.16 Total: 15.77 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.55 Total: -16.37 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.65 Total: -77.88 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.96 Total: -37.40 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.13 kcal Total: -74.73 3.98 -70.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.894 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds