Wall clock time and date at job start Tue Mar 31 2020 13:04:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.45193 * 109.47660 * 2 1
4 4 C 1.34709 * 117.00271 * 179.97438 * 3 2 1
5 5 O 1.21466 * 120.00022 * 0.02562 * 4 3 2
6 6 C 1.47729 * 119.99994 * 179.97438 * 4 3 2
7 7 C 1.39630 * 120.14836 * 180.02562 * 6 4 3
8 8 C 1.37948 * 119.84526 * 179.97438 * 7 6 4
9 9 C 1.38369 * 120.14881 * 359.97438 * 8 7 6
10 10 C 1.50702 * 119.84383 * 179.72155 * 9 8 7
11 11 O 1.42892 * 109.47077 * 90.00139 * 10 9 8
12 12 C 1.42900 * 114.00108 * 180.02562 * 11 10 9
13 13 H 1.09005 * 110.88868 * 26.11841 * 12 11 10
14 14 C 1.55152 * 111.00719 * 150.00093 * 12 11 10
15 15 C 1.54322 * 102.94556 * 153.57582 * 14 12 11
16 16 N 1.47023 * 107.26819 * 337.80632 * 15 14 12
17 17 C 1.36941 * 125.64486 * 178.98737 * 16 15 14
18 18 H 1.08000 * 119.99422 * 174.78381 * 17 16 15
19 19 C 1.38807 * 120.00087 * 354.78920 * 17 16 15
20 20 N 1.31614 * 120.00395 * 7.05204 * 19 17 16
21 21 Si 1.86806 * 119.99835 * 187.05681 * 19 17 16
22 22 H 1.48498 * 109.47366 * 94.98344 * 21 19 17
23 23 H 1.48502 * 109.47108 * 214.98431 * 21 19 17
24 24 H 1.48504 * 109.46906 * 334.98238 * 21 19 17
25 25 C 1.47419 * 108.70282 * 358.93800 * 16 15 14
26 26 C 1.38361 * 120.30381 * 0.02562 * 9 8 7
27 27 C 1.37938 * 120.15398 * 359.97438 * 26 9 8
28 28 H 1.08999 * 109.47624 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.47016 * 300.00577 * 1 2 3
30 30 H 1.09000 * 109.46827 * 60.00263 * 1 2 3
31 31 H 1.08998 * 109.47016 * 239.99423 * 2 1 3
32 32 H 1.09005 * 109.47065 * 120.00129 * 2 1 3
33 33 H 1.08001 * 120.07441 * 359.95314 * 7 6 4
34 34 H 1.07997 * 119.92338 * 179.97438 * 8 7 6
35 35 H 1.08998 * 109.46949 * 210.00352 * 10 9 8
36 36 H 1.09005 * 109.46908 * 329.99851 * 10 9 8
37 37 H 1.09004 * 110.72077 * 271.93592 * 14 12 11
38 38 H 1.08998 * 110.72468 * 35.20999 * 14 12 11
39 39 H 1.09000 * 109.88625 * 97.22565 * 15 14 12
40 40 H 1.09005 * 109.88171 * 218.39049 * 15 14 12
41 41 H 0.97005 * 120.00373 * 180.02562 * 20 19 17
42 42 H 1.08997 * 110.37239 * 265.28775 * 25 16 15
43 43 H 1.09000 * 110.36587 * 142.96881 * 25 16 15
44 44 H 1.08001 * 119.92141 * 180.02562 * 26 9 8
45 45 H 1.08004 * 120.07831 * 180.02562 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0141 1.3688 0.0000
4 6 3.3496 1.5453 0.0005
5 8 4.0895 0.5820 0.0005
6 6 3.9143 2.9104 0.0000
7 6 5.2981 3.0968 0.0000
8 6 5.8187 4.3743 -0.0010
9 6 4.9729 5.4694 -0.0026
10 6 5.5490 6.8620 0.0026
11 8 5.7369 7.3047 -1.3429
12 6 6.2826 8.6210 -1.4509
13 1 6.8689 8.8724 -0.5670
14 6 7.1313 8.7672 -2.7414
15 6 7.0442 10.2781 -3.0432
16 7 5.8398 10.7885 -2.3719
17 6 5.4142 12.0901 -2.3772
18 1 4.4695 12.3511 -1.9235
19 6 6.1969 13.0738 -2.9658
20 7 7.2775 12.7400 -3.6389
21 14 5.7165 14.8717 -2.8024
22 1 6.4435 15.4762 -1.6573
23 1 6.0707 15.5941 -4.0506
24 1 4.2534 14.9738 -2.5695
25 6 5.1657 9.6668 -1.6932
26 6 3.6007 5.2918 -0.0026
27 6 3.0667 4.0200 -0.0016
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 5.9593 2.2429 0.0012
34 1 6.8888 4.5200 -0.0006
35 1 4.8633 7.5369 0.5148
36 1 6.5080 6.8564 0.5207
37 1 8.1640 8.4693 -2.5596
38 1 6.6987 8.1858 -3.5555
39 1 7.9277 10.7852 -2.6555
40 1 6.9648 10.4373 -4.1186
41 1 7.8247 13.4275 -4.0499
42 1 4.3873 9.2495 -2.3318
43 1 4.7426 9.9967 -0.7443
44 1 2.9463 6.1509 -0.0043
45 1 1.9954 3.8827 -0.0020
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001222163285.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:04:18
Heat of formation + Delta-G solvation = -81.019528 kcal
Electronic energy + Delta-G solvation = -25437.148027 eV
Core-core repulsion = 21613.570464 eV
Total energy + Delta-G solvation = -3823.577564 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.86879 -39.39859 -38.19188 -36.88817 -35.92910 -32.84976 -32.18395 -31.62368
-31.24980 -29.21560 -27.49672 -26.60305 -24.39997 -23.96463 -22.90100 -22.58274
-20.94623 -20.34466 -20.07277 -18.36720 -17.35271 -17.01206 -16.89028 -16.61716
-15.77335 -15.65144 -14.82280 -14.65180 -14.55924 -14.46003 -13.95550 -13.87682
-13.67213 -13.46804 -13.19897 -12.88356 -12.81647 -12.30941 -12.25059 -12.14231
-12.01829 -11.72504 -11.46500 -11.28099 -10.98746 -10.94675 -10.92006 -10.80777
-10.75465 -10.23159 -10.09978 -9.83183 -9.73858 -9.25889 -9.20124 -9.11649
-8.59008 -6.85089 -5.73889 -3.06861 0.36368 1.12151 2.22258 2.27949
3.38948 3.40615 3.44675 3.46799 4.02173 4.30175 4.50021 4.51188
4.53108 4.55966 4.68928 4.78552 4.84318 4.97754 5.09067 5.23152
5.32521 5.34801 5.35736 5.43952 5.49562 5.52139 5.55368 5.57415
5.73868 5.75921 5.83204 5.93264 5.99553 6.13750 6.24168 6.31866
6.45697 6.52370 6.56326 6.66011 6.68785 7.42569 7.53864 7.54471
7.60704 7.80988 8.23809 9.19628 9.80087 10.46041 11.38165
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.029181 B = 0.001947 C = 0.001874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 959.305288 B =14377.429079 C =14939.775197
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.063 3.937
3 O -0.354 6.354
4 C 0.512 3.488
5 O -0.509 6.509
6 C -0.130 4.130
7 C -0.057 4.057
8 C -0.111 4.111
9 C -0.043 4.043
10 C 0.095 3.905
11 O -0.371 6.371
12 C 0.071 3.929
13 H 0.069 0.931
14 C -0.139 4.139
15 C 0.177 3.823
16 N -0.604 5.604
17 C -0.230 4.230
18 H 0.079 0.921
19 C -0.007 4.007
20 N -0.920 5.920
21 Si 0.912 3.088
22 H -0.289 1.289
23 H -0.291 1.291
24 H -0.281 1.281
25 C 0.120 3.880
26 C -0.112 4.112
27 C -0.064 4.064
28 H 0.080 0.920
29 H 0.067 0.933
30 H 0.068 0.932
31 H 0.071 0.929
32 H 0.070 0.930
33 H 0.138 0.862
34 H 0.135 0.865
35 H 0.062 0.938
36 H 0.060 0.940
37 H 0.063 0.937
38 H 0.067 0.933
39 H 0.050 0.950
40 H 0.044 0.956
41 H 0.253 0.747
42 H 0.027 0.973
43 H 0.038 0.962
44 H 0.136 0.864
45 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.538 -23.275 9.804 26.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.011 4.011
3 O -0.271 6.271
4 C 0.358 3.642
5 O -0.399 6.399
6 C -0.131 4.131
7 C -0.075 4.075
8 C -0.129 4.129
9 C -0.043 4.043
10 C 0.018 3.982
11 O -0.290 6.290
12 C 0.013 3.987
13 H 0.087 0.913
14 C -0.177 4.177
15 C 0.053 3.947
16 N -0.332 5.332
17 C -0.358 4.358
18 H 0.096 0.904
19 C -0.204 4.204
20 N -0.567 5.567
21 Si 0.742 3.258
22 H -0.216 1.216
23 H -0.217 1.217
24 H -0.206 1.206
25 C -0.007 4.007
26 C -0.130 4.130
27 C -0.082 4.082
28 H 0.099 0.901
29 H 0.086 0.914
30 H 0.087 0.913
31 H 0.089 0.911
32 H 0.089 0.911
33 H 0.156 0.844
34 H 0.153 0.847
35 H 0.080 0.920
36 H 0.078 0.922
37 H 0.081 0.919
38 H 0.085 0.915
39 H 0.068 0.932
40 H 0.063 0.937
41 H 0.063 0.937
42 H 0.045 0.955
43 H 0.056 0.944
44 H 0.154 0.846
45 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -8.328 -23.503 9.553 26.702
hybrid contribution -0.117 0.933 0.212 0.964
sum -8.445 -22.570 9.765 26.001
Atomic orbital electron populations
1.21817 0.92402 1.03091 1.03716 1.23058 0.95471 0.79858 1.02728
1.86546 1.23797 1.32561 1.84177 1.21218 0.80568 0.89920 0.72510
1.90826 1.60430 1.42516 1.46086 1.19104 0.94163 0.89832 1.10036
1.21233 0.93206 0.97951 0.95117 1.21070 1.00489 0.91219 1.00144
1.20054 0.93669 0.94898 0.95692 1.21395 0.99629 0.91134 0.86053
1.87959 1.84594 1.32572 1.23886 1.23478 0.95346 0.81172 0.98693
0.91325 1.23009 0.98224 1.00388 0.96125 1.21185 0.90363 0.85902
0.97296 1.44362 1.26290 1.03499 1.59054 1.19063 1.02755 0.81594
1.32355 0.90362 1.24836 0.97337 0.98132 1.00082 1.69970 1.17127
1.31493 1.38139 0.86102 0.77708 0.84843 0.77144 1.21608 1.21733
1.20607 1.21891 0.94055 0.88788 0.95923 1.21142 0.94710 0.97366
0.99751 1.21441 1.00231 0.91404 0.95093 0.90120 0.91371 0.91301
0.91081 0.91132 0.84433 0.84671 0.91985 0.92218 0.91854 0.91464
0.93189 0.93744 0.93691 0.95483 0.94402 0.84635 0.84335
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.74 10.29 37.16 0.38 -0.35 16
2 C 0.06 0.46 6.19 37.16 0.23 0.69 16
3 O -0.35 -3.47 9.47 -40.52 -0.38 -3.85 16
4 C 0.51 5.87 7.90 34.61 0.27 6.15 16
5 O -0.51 -6.89 16.14 -19.24 -0.31 -7.20 16
6 C -0.13 -1.42 5.87 -104.98 -0.62 -2.03 16
7 C -0.06 -0.60 9.60 -39.17 -0.38 -0.97 16
8 C -0.11 -1.16 9.68 -39.64 -0.38 -1.54 16
9 C -0.04 -0.48 5.52 -104.53 -0.58 -1.06 16
10 C 0.09 1.15 5.89 36.01 0.21 1.37 16
11 O -0.37 -5.95 10.14 -35.23 -0.36 -6.31 16
12 C 0.07 1.28 3.54 -24.58 -0.09 1.19 16
13 H 0.07 1.17 7.83 -51.93 -0.41 0.76 16
14 C -0.14 -2.68 6.69 -24.90 -0.17 -2.85 16
15 C 0.18 4.33 5.38 -3.06 -0.02 4.32 16
16 N -0.60 -15.61 3.39 -170.08 -0.58 -16.18 16
17 C -0.23 -6.42 10.27 -15.06 -0.15 -6.58 16
18 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16
19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16
20 N -0.92 -27.01 10.36 55.49 0.57 -26.43 16
21 Si 0.91 22.01 29.56 -169.99 -5.02 16.98 16
22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
25 C 0.12 2.53 6.97 -2.53 -0.02 2.51 16
26 C -0.11 -1.16 9.68 -39.65 -0.38 -1.54 16
27 C -0.06 -0.62 9.62 -39.17 -0.38 -1.00 16
28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16
29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16
34 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16
35 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16
36 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16
37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
39 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16
40 H 0.04 1.20 7.61 -51.93 -0.40 0.80 16
41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
44 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16
45 H 0.14 1.11 7.61 -52.48 -0.40 0.71 16
LS Contribution 378.61 15.07 5.71 5.71
Total: -1.00 -32.56 378.61 -9.54 -42.10
By element:
Atomic # 1 Polarization: 4.21 SS G_CDS: -7.02 Total: -2.81 kcal
Atomic # 6 Polarization: 0.15 SS G_CDS: -2.15 Total: -2.01 kcal
Atomic # 7 Polarization: -42.61 SS G_CDS: 0.00 Total: -42.61 kcal
Atomic # 8 Polarization: -16.31 SS G_CDS: -1.05 Total: -17.36 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -32.56 -9.54 -42.10 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001222163285.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.915 kcal
(2) G-P(sol) polarization free energy of solvation -32.562 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds